mRNA_E-siliculosus-1a_F_contig131.1887.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig131.1887.1
Unique NamemRNA_E-siliculosus-1a_F_contig131.1887.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig131.1887.1 vs. uniprot
Match: D7G4J2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J2_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.380e-14
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:  415 KRNRATMGKGRWTKQENSDFLDGLERYGKQWRAIAKLVKTRTTVQTKVHHAKYVKQLQ 588
            K  R  M KGRWT QE++DFL GLE+YGK W+AIA +VKTRTTVQT+ HH KY KQ++
Sbjct:   41 KNRRTAMVKGRWTSQEHADFLVGLEKYGKDWKAIADVVKTRTTVQTRTHHQKYEKQVK 98
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BLAST of mRNA_E-siliculosus-1a_F_contig131.1887.1 vs. uniprot
Match: A0A6H5JAU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 3.790e-14
Identity = 37/52 (71.15%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:  433 MGKGRWTKQENSDFLDGLERYGKQWRAIAKLVKTRTTVQTKVHHAKYVKQLQ 588
            MGKGRWT QE++DFL GLE+YGK W+AIA +VKTRTTVQT+ HH KY KQ++
Sbjct:    1 MGKGRWTSQEHADFLAGLEKYGKDWKAIADVVKTRTTVQTRTHHQKYDKQVK 52
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BLAST of mRNA_E-siliculosus-1a_F_contig131.1887.1 vs. uniprot
Match: A0A485KWE4_9STRA (Aste57867_12755 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KWE4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.260e-7
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  400 ASSTNKRNRATMGKGRWTKQENSDFLDGLERYGKQWRAIAKLVKTRTTVQTKVHHAKYVKQLQQRE 597
            A++T  R +     GRW+  E+  FL G+E YGK WR IA+LV+TRTTVQT+ H  K+  +L++ +
Sbjct:   58 AAATGGRGKTPPNGGRWSDHEHRLFLQGIEMYGKDWRRIARLVQTRTTVQTRSHAQKHFDRLEKEK 123
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BLAST of mRNA_E-siliculosus-1a_F_contig131.1887.1 vs. uniprot
Match: A0A8K1C3I8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3I8_PYTOL)

HSP 1 Score: 59.3 bits (142), Expect = 7.940e-7
Identity = 29/58 (50.00%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:  406 STNKRNRATMGKG-RWTKQENSDFLDGLERYGKQWRAIAKLVKTRTTVQTKVHHAKYV 576
            ST+  N A   KG RWT +E++ FL+G++ YGK WR +AK+V TR+ VQT+ H  KY+
Sbjct:  265 STSDSNGAPHSKGGRWTSEEHAAFLEGIKMYGKDWRRVAKVVSTRSAVQTRTHAQKYL 322
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BLAST of mRNA_E-siliculosus-1a_F_contig131.1887.1 vs. uniprot
Match: W4GSI8_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GSI8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 8.770e-7
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  403 SSTNKRNRATMGKGRWTKQENSDFLDGLERYGKQWRAIAKLVKTRTTVQTKVHHAKYVKQLQ 588
            SS+  R +A    GRW+  E+  FL G+E YGK WR IA+LV+TRTTVQT+ H  K+  +++
Sbjct:   28 SSSTIRVKAPPNGGRWSDHEHKLFLQGIELYGKDWRRIARLVQTRTTVQTRSHAQKHFDRME 89
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BLAST of mRNA_E-siliculosus-1a_F_contig131.1887.1 vs. uniprot
Match: A0A7S3PLT1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PLT1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.140e-6
Identity = 25/48 (52.08%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:  442 GRWTKQENSDFLDGLERYGKQWRAIAKLVKTRTTVQTKVHHAKYVKQL 585
            GRWT++E++ FL GLE YGK+W+ IA L+KTR+ VQ + H  KY +++
Sbjct:   27 GRWTREEHNMFLHGLETYGKEWKKIADLIKTRSVVQIRTHAQKYFQKV 74
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BLAST of mRNA_E-siliculosus-1a_F_contig131.1887.1 vs. uniprot
Match: A0A6G0XCS8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCS8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.420e-6
Identity = 27/52 (51.92%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:  442 GRWTKQENSDFLDGLERYGKQWRAIAKLVKTRTTVQTKVHHAKYVKQLQQRE 597
            GRW+  E+  FL G+E YGK WR IA+LV+TRTTVQT+ H  K+  +L++ +
Sbjct:   11 GRWSDHEHRLFLQGIEMYGKDWRRIARLVQTRTTVQTRSHAQKHFDRLEKEK 62
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BLAST of mRNA_E-siliculosus-1a_F_contig131.1887.1 vs. uniprot
Match: A0A7S3HM63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM63_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.430e-6
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:  442 GRWTKQENSDFLDGLERYGKQWRAIAKLVKTRTTVQTKVHHAKYVKQL 585
            GRWT+ E+  FL  L++YGK+W+ +A +VKTRT VQT+ H  KY ++L
Sbjct:   19 GRWTRPEHELFLQALKKYGKEWKKVAGMVKTRTVVQTRTHAQKYFQKL 66
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BLAST of mRNA_E-siliculosus-1a_F_contig131.1887.1 vs. uniprot
Match: A0A0A7CLV9_9STRA (Secreted protein n=2 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A0A7CLV9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.460e-6
Identity = 27/58 (46.55%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  442 GRWTKQENSDFLDGLERYGKQWRAIAKLVKTRTTVQTKVHHAKYVKQLQQREVRHSFE 615
            GRW+ QE+  FL G+E YGK WR IA+LV++RTTVQT+ H  K+  ++++       E
Sbjct: 1073 GRWSDQEHRLFLQGIEMYGKDWRRIARLVQSRTTVQTRSHAQKHFDRIEKERKEQGVE 1130
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BLAST of mRNA_E-siliculosus-1a_F_contig131.1887.1 vs. uniprot
Match: A0A1V9ZMB8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMB8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.190e-6
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:  418 RNRATMGKGRWTKQENSDFLDGLERYGKQWRAIAKLVKTRTTVQTKVHHAKYVKQLQ 588
            R +A    GRW+  E+  FL GLE YG+ WR IA+LV+TRTTVQT+ H  K+  +++
Sbjct:   25 RVKAPPNGGRWSDHEHRLFLQGLELYGRDWRRIARLVQTRTTVQTRSHAQKHFDRIE 81
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig131.1887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4J2_ECTSI2.380e-1465.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAU8_9PHAE3.790e-1471.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485KWE4_9STRA2.260e-745.45Aste57867_12755 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1C3I8_PYTOL7.940e-750.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4GSI8_9STRA8.770e-748.39Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A7S3PLT1_9STRA1.140e-652.08Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A6G0XCS8_9STRA1.420e-651.92Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3HM63_9STRA3.430e-652.08Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A0A7CLV9_9STRA4.460e-646.55Secreted protein n=2 Tax=Thraustotheca clavata Tax... [more]
A0A1V9ZMB8_9STRA5.190e-649.12Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig131contigE-siliculosus-1a_F_contig131:56319..58017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size624
Model size633
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.K
EggNOG OGs2E7WS@1,2SEEY@2759
EggNOG free text desc.SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Seed eggNOG ortholog2880.D7G4J2
Seed ortholog evalue3.5e-13
Seed ortholog score82.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig131.1887.1prot_E-siliculosus-1a_F_contig131.1887.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig131 56319..58008 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927832.5801752-CDS-E-siliculosus-1a_F_contig131:56318..567251622927832.5801752-CDS-E-siliculosus-1a_F_contig131:56318..56725Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig131 56319..56725 +
1696318699.340564-CDS-E-siliculosus-1a_F_contig131:56318..567251696318699.340564-CDS-E-siliculosus-1a_F_contig131:56318..56725Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig131 56319..56725 +
1622927832.5919137-CDS-E-siliculosus-1a_F_contig131:57791..580081622927832.5919137-CDS-E-siliculosus-1a_F_contig131:57791..58008Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig131 57792..58008 +
1696318699.3520472-CDS-E-siliculosus-1a_F_contig131:57791..580081696318699.3520472-CDS-E-siliculosus-1a_F_contig131:57791..58008Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig131 57792..58008 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927832.6088116-UTR-E-siliculosus-1a_F_contig131:58008..580171622927832.6088116-UTR-E-siliculosus-1a_F_contig131:58008..58017Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig131 58009..58017 +
1696318699.362358-UTR-E-siliculosus-1a_F_contig131:58008..580171696318699.362358-UTR-E-siliculosus-1a_F_contig131:58008..58017Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig131 58009..58017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig131.1887.1

>prot_E-siliculosus-1a_F_contig131.1887.1 ID=prot_E-siliculosus-1a_F_contig131.1887.1|Name=mRNA_E-siliculosus-1a_F_contig131.1887.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=208bp
GTCPRGDYFLHAHTARRRVLLTALPDKKVALPPLDSDDKSQLSRSGPSHH
NNNADTILGASLSKQSCRTHHTSIPRRRRAQRQLLSATGRMASLSTSGTP
EEERGPPKAAVSGASSSSNNNGSSNGSNNGSTDASSTNKRNRATMGKGRW
TKQENSDFLDGLERYGKQWRAIAKLVKTRTTVQTKVHHAKYVKQLQQREV
RHSFEFS*
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mRNA from alignment at E-siliculosus-1a_F_contig131:56319..58017+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig131.1887.1 ID=mRNA_E-siliculosus-1a_F_contig131.1887.1|Name=mRNA_E-siliculosus-1a_F_contig131.1887.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1699bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig131:56319..58017+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCACATGCCCACGAGGCGATTATTTTCTGCACGCACACACAGCACGCCG
CAGGGTTTTGCTCACAGCACTCCCGGACAAGAAGGTTGCCCTTCCCCCCC
TCGACTCAGACGACAAGTCCCAACTCTCTCGATCCGGCCCCAGTCATCAC
AACAACAACGCAGATACGATCCTTGGTGCTTCTTTATCAAAACAATCTTG
CCGCACCCATCATACATCCATTCCTCGCAGAAGAAGAGCACAGCGCCAGC
TGCTGTCAGCAACAGGCAGGATGGCTTCCCTGTCCACCAGCGGAACACCG
GAAGAAGAGAGGGGCCCGCCAAAAGCGGCCGTCAGTGGCGCGAGTTCCAG
CAGCAACAACAATGGTAGCAGTAACGGCAGCAACAATGGCAGCACGGATG
CCTCCAGGTATTTTTTTTTTTTTCTAAAAATATGACCAACAAATCCCATT
TTCCTAATAAAATCCATCTCATCTGCGTAGGAGTCTAAGATAGATTAGCA
ATGAATTATTTTCTCGTGATTCCTGATGTGATGATGACGAAGGACGAGTC
TTGATTATGTACATGTTACGAGCACCAACCGCGCTTGCCTGCCATTCGCA
CACCCGGATCTTATCCTTAGTCGTGCTTTTGCCATCGAGTGGTGGGCCCA
GGGAACCAAGCGGCGGACGTGCGCTCTCCCTCGAAAGAAAGGCAGGAATC
CGATTACTAACAGCCTATTGTACATACATGATCAACTGTTTCTAATATGC
ACATTGCTTGTTTGGGCGTGTAGTCTAGACTTTTTCGAAGAACAACCACC
CCACGGCGCGAACGGAATATATCGTCGTCTAGACTGCCCCGCGCGCAAGG
TCTCATGACAATGTTGTTTCGGATCTGGATCTTTTTCGCACCGAAAACAG
CGCCATAACGTCACGCCCTCGTCAGCTTTCCTTACATGCATGAATGAGCG
GTCGCGCACCACGCATGGGCGTCGCATGTACACGCCACCTCCGGGACCAT
ATGTTGGAGAAGATCAAAGAAACGAAAAATAAAAGCAACCAATCCGCCAT
CGAGAGAGAGATGCGAGGGGGGCGCTTGGCGGTGATGTCTGTCTTTTTGC
CGATCCTGTTCCGCAGCGCGTTCACGGGGTTGGTTTGCTTTCAAATCCCC
ACCTTCTGGGCGACAACGGGGCATGTATGTACACAAACGGGTCCAATTTT
ATACCATGTTTCGTGGCTCGGCCCGCAACGTGAATAGCGGGGGGGAAATC
AAGACAGCCGTATAGCCAACAACTTACACGATGTCACCACCAAGGGGGTT
GAAAGAGTCCGATCCTCCGTTACGCTGGGCTCCACCACGTAAATGAAAAC
ATCCAATGCATTGTGGTATCTACAGTACCAAATATCATTGTATGCACCGG
TCCTGCCTGCCTCCCGCCGCTCTAACATCGACGGGCACCACATCCGATCC
GTGATTGTTTTCATCGCATGAAGCACCAACAAGCGCAATCGCGCGACCAT
GGGGAAGGGCCGCTGGACAAAGCAGGAGAACTCGGATTTCCTGGATGGAC
TGGAGCGGTATGGGAAGCAGTGGAGGGCCATCGCTAAACTAGTCAAGACA
CGGACAACCGTTCAGACCAAGGTCCACCACGCAAAATACGTGAAGCAACT
CCAGCAACGCGAGGTGCGACATTCATTCGAATTTTCTTGATTTCTTGTT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig131:56319..58017+

>mRNA_E-siliculosus-1a_F_contig131.1887.1 ID=mRNA_E-siliculosus-1a_F_contig131.1887.1|Name=mRNA_E-siliculosus-1a_F_contig131.1887.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1248bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig131:56319..58017+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCACATGCCCACGAGGCGATTATTTTCTGCACGCACACACAGCACGCCG
CAGGGTTTTGCTCACAGCACTCCCGGACAAGAAGGTTGCCCTTCCCCCCC
TCGACTCAGACGACAAGTCCCAACTCTCTCGATCCGGCCCCAGTCATCAC
AACAACAACGCAGATACGATCCTTGGTGCTTCTTTATCAAAACAATCTTG
CCGCACCCATCATACATCCATTCCTCGCAGAAGAAGAGCACAGCGCCAGC
TGCTGTCAGCAACAGGCAGGATGGCTTCCCTGTCCACCAGCGGAACACCG
GAAGAAGAGAGGGGCCCGCCAAAAGCGGCCGTCAGTGGCGCGAGTTCCAG
CAGCAACAACAATGGTAGCAGTAACGGCAGCAACAATGGCAGCACGGATG
CCTCCAGGGCACATGCCCACGAGGCGATTATTTTCTGCACGCACACACAG
CACGCCGCAGGGTTTTGCTCACAGCACTCCCGGACAAGAAGGTTGCCCTT
CCCCCCCTCGACTCAGACGACAAGTCCCAACTCTCTCGATCCGGCCCCAG
TCATCACAACAACAACGCAGATACGATCCTTGGTGCTTCTTTATCAAAAC
AATCTTGCCGCACCCATCATACATCCATTCCTCGCAGAAGAAGAGCACAG
CGCCAGCTGCTGTCAGCAACAGGCAGGATGGCTTCCCTGTCCACCAGCGG
AACACCGGAAGAAGAGAGGGGCCCGCCAAAAGCGGCCGTCAGTGGCGCGA
GTTCCAGCAGCAACAACAATGGTAGCAGTAACGGCAGCAACAATGGCAGC
ACGGATGCCTCCAGCACCAACAAGCGCAATCGCGCGACCATGGGGAAGGG
CCGCTGGACAAAGCAGGAGAACTCGGATTTCCTGGATGGACTGGAGCGGT
ATGGGAAGCAGTGGAGGGCCATCGCTAAACTAGTCAAGACACGGACAACC
GTTCAGACCAAGGTCCACCACGCAAAATACGTGAAGCAACTCCAGCAACG
CGAGGTGCGACATTCATTCGAATTTTCTTGACACCAACAAGCGCAATCGC
GCGACCATGGGGAAGGGCCGCTGGACAAAGCAGGAGAACTCGGATTTCCT
GGATGGACTGGAGCGGTATGGGAAGCAGTGGAGGGCCATCGCTAAACTAG
TCAAGACACGGACAACCGTTCAGACCAAGGTCCACCACGCAAAATACGTG
AAGCAACTCCAGCAACGCGAGGTGCGACATTCATTCGAATTTTCTTGA
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