mRNA_E-siliculosus-1a_F_contig1309.1877.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1309.1877.1
Unique NamemRNA_E-siliculosus-1a_F_contig1309.1877.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1877.1 vs. uniprot
Match: D8LGK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK5_ECTSI)

HSP 1 Score: 585 bits (1509), Expect = 3.500e-205
Identity = 310/330 (93.94%), Postives = 314/330 (95.15%), Query Frame = 3 
Query:   54 MRSLAAEMTSMRTRRYHSAISARKAPALTRALTITAVATGGVGGAMLTLSANPTPLYAAAMHTTPANLPERRDSQRHGDSSPSAKMWDYLRSRLKKTLRGLLWSMEMLLLWSPVVVSGGAVGVLYLLPLVPEETSSRFSKLWWAFLLKALARSGPTFISKTAQWVKDRQDRLPTQVCSNVRKLNACTRASCLTGGGSWRGLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTDPEAFCNDVNEAIQRARLGEAQAGELLARIFRLCLKYEVRLEPRVALKVIAVAVLEGLRRTLAPDCNML-ASLPSVLTAVPMKTAGAG 1040
            MRSLAAEM SMRTRRYHSAISA+KAPALTRALTITAVATGG GGAMLTLSAN TP YAAA   TPANLPERRDSQRHGDSSPSAKMWDYLRSRLKKTLRGLLWS+EMLLLWSPVVVSG AVGVL  LPLVPEETSS FSKLWWAFLLKALARSGPTFI +TAQWVKDRQDRLPTQVCSNVRKLNACTRASCLTGGGSWRGLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTDPEAFC DVNEAIQRARLGEAQAGELLARIFRLCLKYEVRLEPRVALKVI VAVLEGL RTLAPDCNML A+LPSVLTAVPMKTAGAG
Sbjct:    1 MRSLAAEMASMRTRRYHSAISAKKAPALTRALTITAVATGGAGGAMLTLSANLTPPYAAA--ATPANLPERRDSQRHGDSSPSAKMWDYLRSRLKKTLRGLLWSLEMLLLWSPVVVSGAAVGVLCQLPLVPEETSSHFSKLWWAFLLKALARSGPTFIYRTAQWVKDRQDRLPTQVCSNVRKLNACTRASCLTGGGSWRGLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTDPEAFCKDVNEAIQRARLGEAQAGELLARIFRLCLKYEVRLEPRVALKVITVAVLEGLHRTLAPDCNMLTAALPSVLTAVPMKTAGAG 328
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1877.1 vs. uniprot
Match: A0A6H5J6L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6L4_9PHAE)

HSP 1 Score: 429 bits (1102), Expect = 7.700e-144
Identity = 249/332 (75.00%), Postives = 263/332 (79.22%), Query Frame = 3 
Query:   54 MRSLAAEMTSMRTRRYHSAISARKAPALTRALTITAVATGGVGGAMLTLSANPTPLYAAAMHTTPANLPERRDSQRHGDSSPSAKMWDYLRSRLKKTLRGLLWS-MEMLLLWSPVVVSGGAVGVLYLLPLVPEETSSRFSKLWWAFLLKALARSGPTFISKTAQW-VKDRQDRLPTQVCSNVRKLNACTRASCLTGGGSWRGLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTDPEAFCNDVNEAIQRARLGEAQAGELLARIFRLCLKYEVRLEPRVALKVIAVAVLEGLRRTLAPDCNM-LASLPSVLTAVPMKTAGAG 1040
            MRSL AEM SM TRRYHSAISARK PALTRALTITAVATGG GG MLTLSAN TP  AAA  TTPANLPERRDSQRHGDSS SA MWDYLRSRL KTLRGLLWS +EMLLLWSPVVVSG  VG+L  LPLVPEETSSRFS LWW FLLKALARSGPTF+S+ + + +K R +          R      R +               G   RETVRVLFSAVMVGDGELAGSV+IERA + RCTDPEAFC  VNEAIQRARLGEAQA E+LARIFRLCLKYEVRLEPRVAL+VIAVA LEGLRRTLAPDCN+  ASLPSVLTAVPMKTAGAG
Sbjct:    1 MRSLPAEMASMTTRRYHSAISARKTPALTRALTITAVATGGAGGTMLTLSANLTPPCAAA--TTPANLPERRDSQRHGDSSSSAMMWDYLRSRLTKTLRGLLWSSLEMLLLWSPVVVSGAVVGMLCQLPLVPEETSSRFSMLWWTFLLKALARSGPTFVSRVSFFFMKPRVEN-----AEMFRPSRMYLRRT---------------GFRHRETVRVLFSAVMVGDGELAGSVVIERASEHRCTDPEAFCKGVNEAIQRARLGEAQAEEMLARIFRLCLKYEVRLEPRVALEVIAVAALEGLRRTLAPDCNLPTASLPSVLTAVPMKTAGAG 310
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1877.1 vs. uniprot
Match: A0A6H5LB14_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB14_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.370e-31
Identity = 77/134 (57.46%), Postives = 97/134 (72.39%), Query Frame = 3 
Query:  651 GLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTDPEAFCNDVNEAIQRAR-----LGEAQAGELLARIFRLCLKYEVRLEPRVALKVIAVAVLEGLRRTLAPDCNML-ASLPSVLTAVPMKTAG 1034
            G+ C L +EDR     LF AV+VG+G+ AGS+++ERAR+QRC DP+ FC  VNE +Q AR     LGE QAG+LL RIFRLCLK+EV+LE + A  +IA+AVLEG+ R+L PD N+L ASLP VL A  M  AG
Sbjct:  427 GIVCELDEEDRRNFCDLFHAVVVGEGKRAGSLMVERARNQRCQDPDGFCEGVNEVVQGARSSGMRLGEMQAGDLLERIFRLCLKHEVKLESKFAKTLIAIAVLEGVGRSLDPDLNLLKASLPVVLKATAMNRAG 560
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1877.1 vs. uniprot
Match: K0R937_THAOC (Protein kinase domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R937_THAOC)

HSP 1 Score: 78.6 bits (192), Expect = 1.620e-11
Identity = 50/132 (37.88%), Postives = 81/132 (61.36%), Query Frame = 3 
Query:  651 GLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTD-PEA---FCNDVNEAIQ----RAR----LGEAQAGELLARIFRLCLKYEVRLEPRVALKVIAVAVLEGLRRTLAPDCNML-ASLPSVL 1007
            G++  L   DR+ ++ LF A+++ DG  AGS+++ERAR +RC+  PE    F + V E +     R R    LG  + G LLAR+  LC  Y V ++P ++  V+++ VLEGL R+L PD N++ A++P ++
Sbjct:  470 GISTSLRPNDRKNLKDLFRAIVMNDGYKAGSLMVERARYERCSSLPEGKHFFASGVAEIVDEFHDRKREGLTLGAVRIGALLARVLDLCRTYGVEIDPEMSSVVVSMLVLEGLGRSLDPDLNLMKAAIPFLI 601
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1877.1 vs. uniprot
Match: UPI00201EC452 (uncharacterized aarF domain-containing protein kinase 2-like isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EC452)

HSP 1 Score: 75.9 bits (185), Expect = 1.230e-10
Identity = 42/124 (33.87%), Postives = 69/124 (55.65%), Query Frame = 3 
Query:  651 GLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTDPEAFCNDVNEAIQRAR-----LGEAQAGELLARIFRLCLKYEVRLEPRVALKVIAVAVLEGLRRTLAPDCNMLASLPSVL 1007
            G+   L  +DR   R +F+AV+ G+GE+   + + +     C+DP+AF  D+   + +AR     L +    ELL+ +FR+   + V+LE   A  ++A+AVLEGL R+L P  ++L     VL
Sbjct:  528 GITASLSKDDRLKFREVFTAVVKGEGEVVADLFLHKTAHVECSDPQAFRQDMAAVVMQARQATLSLAQIHVAELLSEVFRVLRTHRVKLESNFANVILAIAVLEGLGRSLDPHLDILEKARPVL 651
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1877.1 vs. uniprot
Match: UPI000D72CFBB (uncharacterized aarF domain-containing protein kinase 2-like isoform X1 n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D72CFBB)

HSP 1 Score: 75.1 bits (183), Expect = 1.990e-10
Identity = 39/124 (31.45%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  651 GLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTDPEAFCNDVNEAIQRAR-----LGEAQAGELLARIFRLCLKYEVRLEPRVALKVIAVAVLEGLRRTLAPDCNMLASLPSVL 1007
            G+   LG+ D E    +F+AV+ G+GE    + +E+++   C DP+ F  D+   +  AR     L + +  +LL+ +F L  K+ V++E   A  +IA+A++EG+ R+L P+ ++L+    VL
Sbjct:  471 GITASLGETDHEKFMQVFTAVVKGEGERVADLFLEKSQHVECVDPDTFRKDMAHIVNSARETALQLSKFKVSQLLSDLFSLLSKHRVKMESNFATIIIAIAIVEGIGRSLDPELDILSKAKRVL 594
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1877.1 vs. uniprot
Match: A0A2T7PM76_POMCA (STI1 domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PM76_POMCA)

HSP 1 Score: 75.1 bits (183), Expect = 2.230e-10
Identity = 39/124 (31.45%), Postives = 71/124 (57.26%), Query Frame = 3 
Query:  651 GLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTDPEAFCNDVNEAIQRAR-----LGEAQAGELLARIFRLCLKYEVRLEPRVALKVIAVAVLEGLRRTLAPDCNMLASLPSVL 1007
            G+   LG+ D E    +F+AV+ G+GE    + +E+++   C DP+ F  D+   +  AR     L + +  +LL+ +F L  K+ V++E   A  +IA+A++EG+ R+L P+ ++L+    VL
Sbjct:  555 GITASLGETDHEKFMQVFTAVVKGEGERVADLFLEKSQHVECVDPDTFRKDMAHIVNSARETALQLSKFKVSQLLSDLFSLLSKHRVKMESNFATIIIAIAIVEGIGRSLDPELDILSKAKRVL 678
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1877.1 vs. uniprot
Match: UPI001EE517A9 (uncharacterized aarF domain-containing protein kinase 2-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE517A9)

HSP 1 Score: 74.7 bits (182), Expect = 2.850e-10
Identity = 41/124 (33.06%), Postives = 69/124 (55.65%), Query Frame = 3 
Query:  651 GLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTDPEAFCNDVNEAIQRAR-----LGEAQAGELLARIFRLCLKYEVRLEPRVALKVIAVAVLEGLRRTLAPDCNMLASLPSVL 1007
            G+   L  +DR   R +F+AV+ G+GE+   + + +     C+DPEAF  D+   + +AR     L +    ELL+ +FR+   + ++LE   A  ++A+AVLEGL R+L P  ++L     +L
Sbjct:  533 GITTSLSKDDRLKFREVFTAVVKGEGEVVADLFLNKTAHVECSDPEAFRQDMAAVVMQARQATLSLSQIHVAELLSEVFRILRIHRMKLESNFANVILAIAVLEGLGRSLDPHLDILEKARPIL 656
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1877.1 vs. uniprot
Match: A0A1S0UC96_LOALO (Atypical/ABC1/ABC1-C protein kinase n=2 Tax=Loa loa TaxID=7209 RepID=A0A1S0UC96_LOALO)

HSP 1 Score: 69.3 bits (168), Expect = 1.270e-8
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 3 
Query:  651 GLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTDPEAFCNDVNEAIQRAR----LGEAQAGELLARIFRLCLKYEVRLEPRVALKVIAVAVLEGLRRTLAPDCNM 983
            G+A     ++ + +R+LF AV+   G   G +++  +  QRC DPEAF ++V++ +Q AR    L      E+L  +F +  ++EV L+P     V+AV VLEGL R+L PD ++
Sbjct:  467 GIALEQKPQNLQKLRLLFRAVVDKRGRDVGELLLLHSPKQRCKDPEAFYDEVDQIVQIARSKSNLRRLNISEMLNELFSIVSRHEVALDPSFTTVVLAVIVLEGLGRSLDPDLDL 581
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1877.1 vs. uniprot
Match: A0A7S1FR00_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FR00_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.900e-8
Identity = 46/136 (33.82%), Postives = 72/136 (52.94%), Query Frame = 3 
Query:  651 GLACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTD----PEAFCNDVNEAIQRAR---------LGEAQAGELLARIFRLCLKYEVRLEPRVALKVIAVAVLEGLRRTLAPDCNML-ASLPSVLTAV 1016
            GL   L   DR  +  LF AV++ +G LAG +++ERAR ++C+      E+F   V   +Q            LG  Q G LL R+  LC  + V + P +A  V++  VLEGL R+L  + N++  ++P +L +V
Sbjct:  164 GLVTSLSPLDRRDLVDLFQAVVLNNGALAGRLMVERARYEKCSTVPGCTESFSAGVQALVQDFHNSRREDGLTLGAVQIGSLLRRMLDLCRAHGVEINPSMANIVVSTLVLEGLGRSLDSELNLIECAIPFILGSV 299
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1309.1877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LGK5_ECTSI3.500e-20593.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J6L4_9PHAE7.700e-14475.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LB14_9PHAE1.370e-3157.46Protein kinase domain-containing protein n=2 Tax=E... [more]
K0R937_THAOC1.620e-1137.88Protein kinase domain-containing protein n=1 Tax=T... [more]
UPI00201EC4521.230e-1033.87uncharacterized aarF domain-containing protein kin... [more]
UPI000D72CFBB1.990e-1031.45uncharacterized aarF domain-containing protein kin... [more]
A0A2T7PM76_POMCA2.230e-1031.45STI1 domain-containing protein n=1 Tax=Pomacea can... [more]
UPI001EE517A92.850e-1033.06uncharacterized aarF domain-containing protein kin... [more]
A0A1S0UC96_LOALO1.270e-835.65Atypical/ABC1/ABC1-C protein kinase n=2 Tax=Loa lo... [more]
A0A7S1FR00_9STRA6.900e-833.82Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1309contigE-siliculosus-1a_F_contig1309:20788..24500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size990
Model size1897
Exons4
Ec32 orthologEc-10_001690.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorymitochondrion
BRITEko00000,ko01001
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.U
EggNOG OGsCOG0661@1,KOG1236@2759
EggNOG free text desc.kinase activity
KEGG koko:K08869
Seed eggNOG ortholog2880.D8LGK5
Seed ortholog evalue3.5e-164
Seed ortholog score584.3
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1309.1877.1prot_E-siliculosus-1a_F_contig1309.1877.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1309 20841..23646 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927830.8406765-UTR-E-siliculosus-1a_F_contig1309:20787..208401622927830.8406765-UTR-E-siliculosus-1a_F_contig1309:20787..20840Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1309 20788..20840 +
1696318698.4003332-UTR-E-siliculosus-1a_F_contig1309:20787..208401696318698.4003332-UTR-E-siliculosus-1a_F_contig1309:20787..20840Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1309 20788..20840 +
1622927830.9230978-UTR-E-siliculosus-1a_F_contig1309:23646..245001622927830.9230978-UTR-E-siliculosus-1a_F_contig1309:23646..24500Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1309 23647..24500 +
1696318698.4489-UTR-E-siliculosus-1a_F_contig1309:23646..245001696318698.4489-UTR-E-siliculosus-1a_F_contig1309:23646..24500Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1309 23647..24500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927830.861011-CDS-E-siliculosus-1a_F_contig1309:20840..213201622927830.861011-CDS-E-siliculosus-1a_F_contig1309:20840..21320Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 20841..21320 +
1696318698.4128633-CDS-E-siliculosus-1a_F_contig1309:20840..213201696318698.4128633-CDS-E-siliculosus-1a_F_contig1309:20840..21320Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 20841..21320 +
1622927830.8798864-CDS-E-siliculosus-1a_F_contig1309:22026..222511622927830.8798864-CDS-E-siliculosus-1a_F_contig1309:22026..22251Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 22027..22251 +
1696318698.4214249-CDS-E-siliculosus-1a_F_contig1309:22026..222511696318698.4214249-CDS-E-siliculosus-1a_F_contig1309:22026..22251Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 22027..22251 +
1622927830.8945189-CDS-E-siliculosus-1a_F_contig1309:22910..230451622927830.8945189-CDS-E-siliculosus-1a_F_contig1309:22910..23045Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 22911..23045 +
1696318698.4293697-CDS-E-siliculosus-1a_F_contig1309:22910..230451696318698.4293697-CDS-E-siliculosus-1a_F_contig1309:22910..23045Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 22911..23045 +
1622927830.9082587-CDS-E-siliculosus-1a_F_contig1309:23496..236461622927830.9082587-CDS-E-siliculosus-1a_F_contig1309:23496..23646Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 23497..23646 +
1696318698.440689-CDS-E-siliculosus-1a_F_contig1309:23496..236461696318698.440689-CDS-E-siliculosus-1a_F_contig1309:23496..23646Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1309 23497..23646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1309.1877.1

>prot_E-siliculosus-1a_F_contig1309.1877.1 ID=prot_E-siliculosus-1a_F_contig1309.1877.1|Name=mRNA_E-siliculosus-1a_F_contig1309.1877.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=330bp
MRSLAAEMTSMRTRRYHSAISARKAPALTRALTITAVATGGVGGAMLTLS
ANPTPLYAAAMHTTPANLPERRDSQRHGDSSPSAKMWDYLRSRLKKTLRG
LLWSMEMLLLWSPVVVSGGAVGVLYLLPLVPEETSSRFSKLWWAFLLKAL
ARSGPTFISKTAQWVKDRQDRLPTQVCSNVRKLNACTRASCLTGGGSWRG
LACGLGDEDRETVRVLFSAVMVGDGELAGSVIIERARDQRCTDPEAFCND
VNEAIQRARLGEAQAGELLARIFRLCLKYEVRLEPRVALKVIAVAVLEGL
RRTLAPDCNMLASLPSVLTAVPMKTAGAG*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1309:20788..24500+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1309.1877.1 ID=mRNA_E-siliculosus-1a_F_contig1309.1877.1|Name=mRNA_E-siliculosus-1a_F_contig1309.1877.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3713bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1309:20788..24500+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCGCGTACACATGATGATACGATGATACATATGTAGTGCAGCAGGAGGG
AAGATGCGGTCGCTCGCTGCAGAGATGACGAGCATGAGAACGAGGAGATA
CCACAGCGCAATTTCCGCCAGAAAGGCGCCAGCCTTGACCAGAGCCTTGA
CCATCACAGCGGTCGCAACAGGCGGTGTGGGAGGAGCAATGTTGACTCTG
AGTGCCAACCCTACTCCTCTGTACGCTGCGGCTATGCATACGACACCTGC
CAACTTGCCGGAGCGTCGCGACAGCCAGAGGCATGGGGATAGCAGCCCGT
CCGCCAAGATGTGGGATTACTTGCGGTCGAGGCTCAAAAAAACGCTGAGG
GGGCTCCTCTGGTCCATGGAGATGTTGCTTCTCTGGTCTCCTGTCGTTGT
TTCTGGAGGTGCGGTGGGCGTGTTATACCTACTGCCGCTTGTTCCCGAGG
AGACTTCATCGCGCTTCTCAAAGCTGTGGTGGGCCTTCCTGTTGAAAGCC
CTTGCCAGGAGCGGGCCCACGTTCATTTCTAAGGTGAGCTTTTTCTTGTA
TGAAACCAAGGGTAGAAAATGCTGAAATGGTTCGCGCGAGCAGGATACAA
CATACCTCCGGAGGTTGCGTGCGACTCTACCAATCCTGGGCCGATTTAAG
AGTTCGATTACTCTGCAGCAGTGACGGTGCCGACAATGGCAACTTTGAAA
AGCTTTCCTAGAGCCTTTTCCACAAACCTATTGTTTGATTCGTGGCAACC
TCTTCGTCGTGGAGTATTCGAGCTTTGAAAATCGGTGCAGGGCGTGTGGT
ATCTTACGCAACCCACTGGCGTAATCACCTCTCGTTGTGTAGCTAGCAAC
CAGCCGACGGTTCGCCGCGTGCCGCTACGTTGCCGCCACTCTCGCCTACA
GCCACCACCCCCCGCCGCGGCCGCGGCCGTACCCCTCTCCCCACCCTATG
ACCTCATCGTTTTACGTCGACCACGATGTCACTTGCATTTGTGCAAAGAG
CGTTAGCGCAATTACAACCAGCATTTCCAGAAGTTGAATATTTTTGAGAA
ACGCGCAGCCGAGGTTTGCCTTGGTCCCATTTTTTTTTGCCTATGGTGTG
GCTTCTTCGGCCAAGGCCTAGCGTGCCCACAGTTCGGTGGCATTGTTCAC
CCCCAGCCGCCCCCGACGTTAACCCTCCCCCATCCCTGTGCCCCCCGCCT
CTCCTGGCGTTTCATGAACGACCATGGCCGGGAAAAAAGACTGCCCAATG
GGTCAAAGACCGACAGGACAGGCTTCCGACACAGGTCTGCAGCAATGTAC
GGAAGCTAAACGCGTGCACCAGGGCCTCCTGCTTGACGGGCGGGGGGTCT
TGGCGTGGTCTCGCATGCGGTCTTGGCGACGAAGACCGGGAGACAGTACG
GGTTCTCTTCTCCGCCGTCATGGTGGGCGACGGGGAGCTGGCTGGTTCGG
TGATCATCGAGCGGGTGAGAATAAAGAGTGCTTAGCACCAGCTGGTGACA
TCACTGTTAACAAAAAAATCAGTGTATAGTCTTAAAATAAGCCCAGTTCC
AGTAGGCGCGGGATTTCTATCTCTTTTTGCGCAATGGGCGTGTGGTCGAG
GTAGAGAACCCCCGGGTGCCCGTTTTGGCGATTGCGTTGGGCAGTTTCGA
GCCTCAAGATTTTCATGTCTATCTGGTGGTACCCTGACCAGAGAAGGGCC
ACAGAGATCCCCCCCCCCCCTCTTCGGGACGGAGGGTCCGCATCACGGGA
CCCCCTGACTCTAGGGTGTGCTCGGGGGCTACCACTTTTAGGTGAGTCGC
TTTCGTTCATCTCCATCGAAGAAGGTTCAGGAGAAGTTTCAACTTTGTAT
TTCCAGGTGCATGCACCGGCGGGCGGATGACGGTACATGTATTAATAGTT
AGAGGGTGCGCGTGTAAAAGACGGCGTGGAGAAAAAAAACCAAAGAGGGA
AAAACATGTAAGGGTCACGGCTATCCTTACTCCGCTGCACGTGCTTGCTC
GCCGTGCCGCCGCCATGGAGTACTGCAAATAACTCGCTTGTCTCAGGGGA
AACTGTTTGCTCACGCTACACACGTGTTCCCCGCGCGTTTCGCGTTTCGC
TTGTCCCTCTTTATTCTTCGCAGGCAAGAGACCAGCGCTGCACCGACCCT
GAGGCCTTTTGCAACGACGTGAACGAAGCGATTCAGAGGGCTAGGCTTGG
GGAGGCCCAGGCGGGGGAGTTGTTGGCACGGATCTTCAGGTTGTGCTTGA
AGTACGAGGTGGGTGGGTGTTACCGTCTCCGAGACCTCTCGCCTTTTTTC
CTTCCTCTCCCGGGTGTTCGAACACTCAGTGCAGCGTAAAAAAAAAACTT
CGAAGGGCGAAACGTGTCGACCTGTGTCGTCTTTCGGTCTGAACCTGAAC
AGCAGTCTTCGCACACCCGCATCGCGATTCGCGAGTCGCGATCTTGAGAA
AATATAACGTTTGTTTCTTTTCCCGTGCTTTCCAACACTCAGTGCAGCGT
AAAATAGTACCTTCGAAAGGCAAAAGTGTTAAACCGGTGAATCACGAGAC
GTGGTATTGTATTTTCCTTGTCTTCCTCTCTAAACCTGACTGCTGTAGCT
GTTATTGTTTTCGCTGAGATGCGCCATTTGGTCTTCGCACACCCGCTGGC
GATCTCCACAAAAACAAAACGTTGTGAAACGCGCCGGAATATGCATATCA
ACAACACAGGTGAGACTGGAGCCCAGGGTGGCACTCAAGGTGATCGCCGT
GGCCGTTCTGGAAGGGCTCCGGCGAACCCTTGCCCCCGACTGCAACATGC
TGGCTTCACTACCGTCGGTTTTGACAGCCGTCCCAATGAAGACGGCAGGC
GCGGGGTAAAAGCGAATTCTTCGCGCTGCCGGCGGCGTCGAGTGCCGCTG
CGTGCAATGGTCAGAGCATCTACAAGAGACGTTTCTGCTGTCACTGCTGT
GCACATGCGTCCCTGGCACGACAGCAGTCAAGAGATCTATCCTGCTCTTT
TTCCTCGAGAACAAGACTGTATACAGATTTGTACATATTTCTTCTTGGTT
CGTTGGGGTCCGCTGGGCTCTTCTGTAGTCACAACACGTCAGCTGTGTGA
GCTGTCGAGCTGGTCCTGCTGCCGACTGCATTTTCATCTTGCATCCCACC
CCTTGATGACATGTGTGCTCTCATGAGCCCACTCCTGAGGGGATCCCTTG
TATGTTATCATGTTTTTACCCGCTGCCACAAGCACAATACTTCTTAAACA
GTTTCCACAGCATTCACGGAGTAGAGAAGAAATCCTTCAACGCAGAGCGT
ACAGAGGGTCTGTCAAGCCGCCACGCGAAAAAGTGTCCCTATATGCATAC
TGTAACGGCTGGTCTTGGTTGTTTCAAGTCTATCTAACCTTGTTTCGAGC
TTGTCGTTTAGAAAATGATCGGGATAACCCATCCTTGCTTAGGCACAGGG
GACGCCGCTTTTTGCGAGCAAAGCCGTGGCTGGAGGGCACGGTCGATGTC
GCTTACTCGCTGAAAGCGTTCCAAACGGTCATCATCCGAAGACGCGATTT
TTCAACATCGCTCGCTGGGCCATCCTCGAATCCACCGTGGATGACGCCAC
CCGTCATCCAAGGATCTCGGAACTAGCCCTATTTTTTTGCCATTTTTCAA
ATCCCGCCGCAGGTGCGTTGACCAATCAGCGAATTGCGTGCCACAAAACA
ACTAGTGTAACGC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1309:20788..24500+

>mRNA_E-siliculosus-1a_F_contig1309.1877.1 ID=mRNA_E-siliculosus-1a_F_contig1309.1877.1|Name=mRNA_E-siliculosus-1a_F_contig1309.1877.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1980bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1309:20788..24500+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGGTCGCTCGCTGCAGAGATGACGAGCATGAGAACGAGGAGATACCA
CAGCGCAATTTCCGCCAGAAAGGCGCCAGCCTTGACCAGAGCCTTGACCA
TCACAGCGGTCGCAACAGGCGGTGTGGGAGGAGCAATGTTGACTCTGAGT
GCCAACCCTACTCCTCTGTACGCTGCGGCTATGCATACGACACCTGCCAA
CTTGCCGGAGCGTCGCGACAGCCAGAGGCATGGGGATAGCAGCCCGTCCG
CCAAGATGTGGGATTACTTGCGGTCGAGGCTCAAAAAAACGCTGAGGGGG
CTCCTCTGGTCCATGGAGATGTTGCTTCTCTGGTCTCCTGTCGTTGTTTC
TGGAGGTGCGGTGGGCGTGTTATACCTACTGCCGCTTGTTCCCGAGGAGA
CTTCATCGCGCTTCTCAAAGCTGTGGTGGGCCTTCCTGTTGAAAGCCCTT
GCCAGGAGCGGGCCCACGTTCATTTCTAAGATGCGGTCGCTCGCTGCAGA
GATGACGAGCATGAGAACGAGGAGATACCACAGCGCAATTTCCGCCAGAA
AGGCGCCAGCCTTGACCAGAGCCTTGACCATCACAGCGGTCGCAACAGGC
GGTGTGGGAGGAGCAATGTTGACTCTGAGTGCCAACCCTACTCCTCTGTA
CGCTGCGGCTATGCATACGACACCTGCCAACTTGCCGGAGCGTCGCGACA
GCCAGAGGCATGGGGATAGCAGCCCGTCCGCCAAGATGTGGGATTACTTG
CGGTCGAGGCTCAAAAAAACGCTGAGGGGGCTCCTCTGGTCCATGGAGAT
GTTGCTTCTCTGGTCTCCTGTCGTTGTTTCTGGAGGTGCGGTGGGCGTGT
TATACCTACTGCCGCTTGTTCCCGAGGAGACTTCATCGCGCTTCTCAAAG
CTGTGGTGGGCCTTCCTGTTGAAAGCCCTTGCCAGGAGCGGGCCCACGTT
CATTTCTAAGACTGCCCAATGGGTCAAAGACCGACAGGACAGGCTTCCGA
CACAGGTCTGCAGCAATGTACGGAAGCTAAACGCGTGCACCAGGGCCTCC
TGCTTGACGGGCGGGGGGTCTTGGCGTGGTCTCGCATGCGGTCTTGGCGA
CGAAGACCGGGAGACAGTACGGGTTCTCTTCTCCGCCGTCATGGTGGGCG
ACGGGGAGCTGGCTGGTTCGGTGATCATCGAGCGGACTGCCCAATGGGTC
AAAGACCGACAGGACAGGCTTCCGACACAGGTCTGCAGCAATGTACGGAA
GCTAAACGCGTGCACCAGGGCCTCCTGCTTGACGGGCGGGGGGTCTTGGC
GTGGTCTCGCATGCGGTCTTGGCGACGAAGACCGGGAGACAGTACGGGTT
CTCTTCTCCGCCGTCATGGTGGGCGACGGGGAGCTGGCTGGTTCGGTGAT
CATCGAGCGGGCAAGAGACCAGCGCTGCACCGACCCTGAGGCCTTTTGCA
ACGACGTGAACGAAGCGATTCAGAGGGCTAGGCTTGGGGAGGCCCAGGCG
GGGGAGTTGTTGGCACGGATCTTCAGGTTGTGCTTGAAGTACGAGGCAAG
AGACCAGCGCTGCACCGACCCTGAGGCCTTTTGCAACGACGTGAACGAAG
CGATTCAGAGGGCTAGGCTTGGGGAGGCCCAGGCGGGGGAGTTGTTGGCA
CGGATCTTCAGGTTGTGCTTGAAGTACGAGGTGAGACTGGAGCCCAGGGT
GGCACTCAAGGTGATCGCCGTGGCCGTTCTGGAAGGGCTCCGGCGAACCC
TTGCCCCCGACTGCAACATGCTGGCTTCACTACCGTCGGTTTTGACAGCC
GTCCCAATGAAGACGGCAGGCGCGGGGTAAGTGAGACTGGAGCCCAGGGT
GGCACTCAAGGTGATCGCCGTGGCCGTTCTGGAAGGGCTCCGGCGAACCC
TTGCCCCCGACTGCAACATGCTGGCTTCACTACCGTCGGTTTTGACAGCC
GTCCCAATGAAGACGGCAGGCGCGGGGTAA
back to top