mRNA_E-siliculosus-1a_F_contig1308.1869.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1308.1869.1
Unique NamemRNA_E-siliculosus-1a_F_contig1308.1869.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1308.1869.1 vs. uniprot
Match: A0A6H5L1C6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C6_9PHAE)

HSP 1 Score: 315 bits (807), Expect = 1.280e-106
Identity = 165/170 (97.06%), Postives = 166/170 (97.65%), Query Frame = 1 
Query:    1 RVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDCDVRKKPRNKKNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRTLNSAT 510
            RVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGED +VRKKPRNK NRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKR  NSAT
Sbjct:  118 RVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDGEVRKKPRNKTNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRPPNSAT 287
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BLAST of mRNA_E-siliculosus-1a_F_contig1308.1869.1 vs. uniprot
Match: D7FID1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID1_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 8.470e-100
Identity = 150/152 (98.68%), Postives = 150/152 (98.68%), Query Frame = 1 
Query:   55 MYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDCDVRKKPRNKKNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRTLNSAT 510
            MYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGED DVRKKPRNKKNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRT NSAT
Sbjct:    1 MYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDGDVRKKPRNKKNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRTPNSAT 152
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BLAST of mRNA_E-siliculosus-1a_F_contig1308.1869.1 vs. uniprot
Match: A0A835ZAD4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD4_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.270e-31
Identity = 71/169 (42.01%), Postives = 95/169 (56.21%), Query Frame = 1 
Query:    1 RVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDCDVRKKPRNKKNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRTLNSA 507
            RVSITTC +S++  P L++ G +SVP++GQ+AV   AL     ST LL+ C  PYV +++EI   G                           R F+ E ++I G  R TEF + +V+P P+  RPFVSFKA  +YYFIQG  + DK LL+ LLGR L D EK +  SA
Sbjct:   64 RVSITTCAMSMIGTPLLLVLGNDSVPLSGQIAVTGVALTAAVGSTALLHWCTRPYVHKLSEITGRGAID----------------------KARLFKAELLSILGRPRVTEFRLGDVQPQPDALRPFVSFKARDNYYFIQGEVLQDKALLKELLGRPLDDSEKSSGTSA 210
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BLAST of mRNA_E-siliculosus-1a_F_contig1308.1869.1 vs. uniprot
Match: W7TRL5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRL5_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.770e-20
Identity = 58/164 (35.37%), Postives = 84/164 (51.22%), Query Frame = 1 
Query:    1 RVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVF--RMAEIYEGGVAQGEDCDVRKKPRNKKNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHE 486
            RVS+TTC+I + + P  +  G ESVP+A  VA+    L+ T   T+LL+    PY+F  R+A      V    D ++                    F  + ++    R TT F++ +V+P+PN++RPFVSF A    YF+ G    DK LL +LLGR LK  E
Sbjct:  125 RVSLTTCIIGLFSTPFFLTLGSESVPMAANVALTGIVLLATCGPTILLHAFTKPYIFALRVAPF----VTADNDLEISDSGDKSDRAVRRNTTPDMHFSADTIDFLSRRITTSFNLSDVKPLPNSTRPFVSFSARDRLYFVHGETFPDKHLLHSLLGRPLKKSE 284
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BLAST of mRNA_E-siliculosus-1a_F_contig1308.1869.1 vs. uniprot
Match: UPI0009E48F37 (uncharacterized protein LOC110023651 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E48F37)

HSP 1 Score: 53.1 bits (126), Expect = 2.900e-5
Identity = 53/167 (31.74%), Postives = 73/167 (43.71%), Query Frame = 1 
Query:    7 SITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDCDVRKKPRNKKNRYGMPKLSGRRFRVERMNIFG--VRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRTLN 501
            S++TC +S    P +       + V  + AV S  +V + S+T  L+  VSPYV ++          G D                       F VE M      V RT +FS   V P P T+RPFVSF+A G++YF+ G    +K LL  L  RE + HE    N
Sbjct:  116 SLSTCCLSASLGPVITFMTSPDMNVIVKGAVASTVIVLSASTTAALHWFVSPYVHKLRW------RPGSDS----------------------FEVEMMTWLATYVPRTIKFS--SVRP-PETNRPFVSFRADGNFYFVDGEHCHNKALLARLTPRE-RAHESAFKN 250
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1308.1869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L1C6_9PHAE1.280e-10697.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FID1_ECTSI8.470e-10098.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAD4_9STRA5.270e-3142.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TRL5_9STRA1.770e-2035.37Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
UPI0009E48F372.900e-531.74uncharacterized protein LOC110023651 n=1 Tax=Phala... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1308contigE-siliculosus-1a_F_contig1308:182..1512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size513
Model size513
Exons3
Ec32 orthologEc-11_001450.1
Ec32 ortholog descriptionconserved unknown protein
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1308.1869.1prot_E-siliculosus-1a_F_contig1308.1869.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1308 182..1512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927829.1179469-CDS-E-siliculosus-1a_F_contig1308:181..3641622927829.1179469-CDS-E-siliculosus-1a_F_contig1308:181..364Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1308 182..364 +
1696318697.8181229-CDS-E-siliculosus-1a_F_contig1308:181..3641696318697.8181229-CDS-E-siliculosus-1a_F_contig1308:181..364Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1308 182..364 +
1622927829.1292129-CDS-E-siliculosus-1a_F_contig1308:790..9551622927829.1292129-CDS-E-siliculosus-1a_F_contig1308:790..955Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1308 791..955 +
1696318697.8255844-CDS-E-siliculosus-1a_F_contig1308:790..9551696318697.8255844-CDS-E-siliculosus-1a_F_contig1308:790..955Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1308 791..955 +
1622927829.1393015-CDS-E-siliculosus-1a_F_contig1308:1347..15121622927829.1393015-CDS-E-siliculosus-1a_F_contig1308:1347..1512Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1308 1348..1512 +
1696318697.832693-CDS-E-siliculosus-1a_F_contig1308:1347..15121696318697.832693-CDS-E-siliculosus-1a_F_contig1308:1347..1512Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1308 1348..1512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1308.1869.1

>prot_E-siliculosus-1a_F_contig1308.1869.1 ID=prot_E-siliculosus-1a_F_contig1308.1869.1|Name=mRNA_E-siliculosus-1a_F_contig1308.1869.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=171bp
RVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNL
CVSPYVFRMAEIYEGGVAQGEDCDVRKKPRNKKNRYGMPKLSGRRFRVER
MNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLL
QTLLGRELKDHEKRTLNSAT*
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mRNA from alignment at E-siliculosus-1a_F_contig1308:182..1512+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1308.1869.1 ID=mRNA_E-siliculosus-1a_F_contig1308.1869.1|Name=mRNA_E-siliculosus-1a_F_contig1308.1869.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1331bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1308:182..1512+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGTGTCGATAACGACGTGCCTCATCAGCATTTTGGCGGTGCCGGCCCT
GGTGATGTACGGCAAGGAGAGCGTGCCGGTGGCAGGACAAGTTGCTGTGA
TGAGCGCGGCCTTGGTGGGAACCGGGAGCTCCACGCTCCTCCTGAACCTC
TGTGTCAGTCCCTACGTGTTTCGAATGGCTGAGGTAAAACGAGCTGTGCG
TCGGCAAAGCGACCATGATTTTGGTCAAACGACAGGTTGCATGGTACCAG
AATATTGGCCTGCCTGTGTACATGGACGTTAGGAATGCCATCACAACCCA
ACATTGGCGCTTTTTCGGCCTCAAGCGTTCGTACCAGTATTCTCGTCCCT
TTCAGTATGCACATGCAGCAATGATTAATTTTTGCACCTTCTATAAATGC
TTGGAATGCCCTCGATAAAAGCTCTCACATTGTAACGCACGTCCGACGCT
CCTGCGTTGGACATTTATTTCTTCTCGAACCTAGAGAGTGCCTTTTTTTG
GCCACGGTCCTTCTCCGGAGAATGAGGGATGTGCCTCGGCCAACCCTCGG
GCAGATCCGATTGTGTTCGTCAATATTTGTTGTTTCGACCTCCCCTTGCT
TGTGCTCAGATATACGAGGGGGGAGTCGCCCAGGGAGAAGACTGTGACGT
TCGCAAGAAACCAAGAAACAAGAAGAACCGGTACGGCATGCCCAAGCTGT
CGGGTCGGCGATTTCGTGTGGAGCGGATGAACATCTTCGGGGTGCGAAGA
ACCACCGAGTTTTCGATAGATGAGGTGCGGATCGATGGATGGCTGAACAT
CTGGGTCGATGATTTAGTTTCGCTGCACACAGTTGAGGATTTTTCTGTCG
AATGAATATCCAGAGACGTGCAATGAACAACGTTCACTAGCGCCGTCGAG
CCCATGTCTCTGTTGGCAGGTATACAGACAAAGGCACCCGCCTGCTGTTG
CATGTCGCACTTCGGTTGCGTCGGTCACGGACAAGCAAGTTGTTTGCTAA
TTGGTGATTTTGTGCATACACCGTCTCGCCGGAAGGGTATATTACGTACC
ATGCGTGTGGAGGCTGTTGGGAAAAAACACGGCTAGGGCTTTTATGTGCT
TCCAATGTCTCTCTGACGTGTTTGCTATGTTACATACGTAATTTTTGTCT
TTCCCTGTTGTCTCAGGTGGAGCCCATGCCCAACACATCGAGACCATTTG
TGTCCTTCAAGGCCGCCGGCAGCTACTACTTTATCCAGGGGCACGACATG
GCCGACAAGGTGCTCCTTCAGACCCTGCTGGGACGAGAGCTCAAGGACCA
CGAGAAGCGGACGCTAAATAGTGCGACGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1308:182..1512+

>mRNA_E-siliculosus-1a_F_contig1308.1869.1 ID=mRNA_E-siliculosus-1a_F_contig1308.1869.1|Name=mRNA_E-siliculosus-1a_F_contig1308.1869.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1026bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1308:182..1512+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGGGTGTCGATAACGACGTGCCTCATCAGCATTTTGGCGGTGCCGGCCCT
GGTGATGTACGGCAAGGAGAGCGTGCCGGTGGCAGGACAAGTTGCTGTGA
TGAGCGCGGCCTTGGTGGGAACCGGGAGCTCCACGCTCCTCCTGAACCTC
TGTGTCAGTCCCTACGTGTTTCGAATGGCTGAGAGGGTGTCGATAACGAC
GTGCCTCATCAGCATTTTGGCGGTGCCGGCCCTGGTGATGTACGGCAAGG
AGAGCGTGCCGGTGGCAGGACAAGTTGCTGTGATGAGCGCGGCCTTGGTG
GGAACCGGGAGCTCCACGCTCCTCCTGAACCTCTGTGTCAGTCCCTACGT
GTTTCGAATGGCTGAGATATACGAGGGGGGAGTCGCCCAGGGAGAAGACT
GTGACGTTCGCAAGAAACCAAGAAACAAGAAGAACCGGTACGGCATGCCC
AAGCTGTCGGGTCGGCGATTTCGTGTGGAGCGGATGAACATCTTCGGGGT
GCGAAGAACCACCGAGTTTTCGATAGATGAGATATACGAGGGGGGAGTCG
CCCAGGGAGAAGACTGTGACGTTCGCAAGAAACCAAGAAACAAGAAGAAC
CGGTACGGCATGCCCAAGCTGTCGGGTCGGCGATTTCGTGTGGAGCGGAT
GAACATCTTCGGGGTGCGAAGAACCACCGAGTTTTCGATAGATGAGGTGG
AGCCCATGCCCAACACATCGAGACCATTTGTGTCCTTCAAGGCCGCCGGC
AGCTACTACTTTATCCAGGGGCACGACATGGCCGACAAGGTGCTCCTTCA
GACCCTGCTGGGACGAGAGCTCAAGGACCACGAGAAGCGGACGCTAAATA
GTGCGACGTAGGTGGAGCCCATGCCCAACACATCGAGACCATTTGTGTCC
TTCAAGGCCGCCGGCAGCTACTACTTTATCCAGGGGCACGACATGGCCGA
CAAGGTGCTCCTTCAGACCCTGCTGGGACGAGAGCTCAAGGACCACGAGA
AGCGGACGCTAAATAGTGCGACGTAG
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