mRNA_E-siliculosus-1a_F_contig1307.1868.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1307.1868.1
Unique NamemRNA_E-siliculosus-1a_F_contig1307.1868.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1307.1868.1 vs. uniprot
Match: D8LQA2_ECTSI (Cationic amino acid transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQA2_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 1.160e-83
Identity = 133/139 (95.68%), Postives = 138/139 (99.28%), Query Frame = 2 
Query:    2 AFRGPFSPWVPALGTAISWILLTQLSWASLRWTLWAVGAVSLWYFTYGLKHSVGQKSRTWPQLAAATAAAASNTSTGEESLLESPPNTPEFGSGKRMGSNHDRGSGGKRERSQLRATFPGEPPLDAVSPARGGSTGRLA 418
            AFRGPFSPWVPA+GTAISWILLTQLSWASLRWTLWAVGAVSLWYFTYGLKHSVGQKSRTWPQLAAATAAAASNTSTGEESLLESPP+TPEFGSGKRMG NHDRG+GGKRERSQLRATFPGEPPLD+VSPARGGSTGRL+
Sbjct:  526 AFRGPFSPWVPAVGTAISWILLTQLSWASLRWTLWAVGAVSLWYFTYGLKHSVGQKSRTWPQLAAATAAAASNTSTGEESLLESPPSTPEFGSGKRMGGNHDRGAGGKRERSQLRATFPGEPPLDSVSPARGGSTGRLS 664
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BLAST of mRNA_E-siliculosus-1a_F_contig1307.1868.1 vs. uniprot
Match: A0A7S4J7E7_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J7E7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.390e-7
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 2 
Query:    5 FRGPFSPWVPALGTAISWILLTQLSWASLRWTLWAVGAVSLWYFTYGLKHSVG 163
            F  P  P++P LGT I+W L+ QL W  L   +  VG   ++YF+YGLKHSVG
Sbjct:  518 FEAPLVPYLPLLGTFINWYLIAQLEWLGLTLLVAYVGISVVFYFSYGLKHSVG 570
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BLAST of mRNA_E-siliculosus-1a_F_contig1307.1868.1 vs. uniprot
Match: A0A7S4RTY9_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RTY9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.960e-6
Identity = 23/51 (45.10%), Postives = 37/51 (72.55%), Query Frame = 2 
Query:    5 FRGPFSPWVPALGTAISWILLTQLSWASLRWTLWAVGAVSLWYFTYGLKHS 157
            F+ PF P++P LG  ++W L++QL  + L + +  +GA +L+YFTYG+KHS
Sbjct:   22 FQTPFVPYLPCLGAFVNWYLISQLELSGLFFLVIYLGAATLFYFTYGVKHS 72
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BLAST of mRNA_E-siliculosus-1a_F_contig1307.1868.1 vs. uniprot
Match: A0A7R9W236_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W236_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.510e-6
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 2 
Query:    5 FRGPFSPWVPALGTAISWILLTQLSWASLRWTLWAVGAVSLWYFTYGLKHSVG 163
            F  P  P++P LG  I+W L+ QL W  +   +  VG   ++YF+YGLKHSVG
Sbjct:   58 FEVPLVPYLPLLGIFINWYLIAQLEWHGILLLVVYVGIAVIFYFSYGLKHSVG 110
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BLAST of mRNA_E-siliculosus-1a_F_contig1307.1868.1 vs. uniprot
Match: A0A7S2HH01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HH01_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.320e-5
Identity = 23/55 (41.82%), Postives = 35/55 (63.64%), Query Frame = 2 
Query:    5 FRGPFSPWVPALGTAISWILLTQLSWASLRWTLWAVGAVSLWYFTYGLKHSVGQK 169
            FR P  P++P LG  ++W L+ QL  + L   L  +G  +L+YF+YG+KHS  +K
Sbjct:   70 FRTPLVPYLPCLGAFVNWYLIAQLELSGLFMLLLYLGITTLFYFSYGVKHSKQRK 124
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1307.1868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LQA2_ECTSI1.160e-8395.68Cationic amino acid transporter-like protein n=2 T... [more]
A0A7S4J7E7_9STRA9.390e-749.06Hypothetical protein n=3 Tax=Odontella aurita TaxI... [more]
A0A7S4RTY9_9STRA1.960e-645.10Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7R9W236_9STRA2.510e-645.28Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2HH01_9STRA3.320e-541.82Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1307contigE-siliculosus-1a_F_contig1307:32316..33904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size420
Model size422
Exons2
Ec32 orthologEc-26_005560.2
Ec32 ortholog descriptioncationic amino acid transporter-like protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927828.8264546-CDS-E-siliculosus-1a_F_contig1307:32316..325921622927828.8264546-CDS-E-siliculosus-1a_F_contig1307:32316..32592Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1307 32317..32592 -
1696318697.685577-CDS-E-siliculosus-1a_F_contig1307:32316..325921696318697.685577-CDS-E-siliculosus-1a_F_contig1307:32316..32592Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1307 32317..32592 -
1622927828.8387952-CDS-E-siliculosus-1a_F_contig1307:33760..339041622927828.8387952-CDS-E-siliculosus-1a_F_contig1307:33760..33904Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1307 33761..33904 -
1696318697.6939163-CDS-E-siliculosus-1a_F_contig1307:33760..339041696318697.6939163-CDS-E-siliculosus-1a_F_contig1307:33760..33904Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1307 33761..33904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1307.1868.1prot_E-siliculosus-1a_F_contig1307.1868.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1307 32317..33904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1307.1868.1

>prot_E-siliculosus-1a_F_contig1307.1868.1 ID=prot_E-siliculosus-1a_F_contig1307.1868.1|Name=mRNA_E-siliculosus-1a_F_contig1307.1868.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=140bp
GVPRSVFPLGARPRHRDKLDPFDPAKLGEFAVDPVGGGGGFLVVLHVRAE
AQRGPKVSDMAPASGSHSGGGIKHLHRGRKPPGIAAEHTGVWVGEEDGEQ
SRQRVGRQAGAVTAEGDVPGRAATRRRVSSEGGLDGEISR
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mRNA from alignment at E-siliculosus-1a_F_contig1307:32316..33904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1307.1868.1 ID=mRNA_E-siliculosus-1a_F_contig1307.1868.1|Name=mRNA_E-siliculosus-1a_F_contig1307.1868.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1589bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1307:32316..33904- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGTTCCGAGGTCCGTTTTCCCCCTGGGTGCCCGCCCTAGGCACCGCGA
TAAGCTGGATCCTTTTGACCCAGCTAAGCTGGGCGAGTTTGCGGTGGACC
CTGTGGGCGGTGGGGGCGGTTTCCTTGTGGTACTTCACGTACGGGTGAGT
AGGAGTTCAAGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGTTAACGCATG
TTGTAGGGGGTAAACCATTGACCTCCCCTCCCTACAATGCTGCCGGGACA
GGGGGGGAGGTGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGATGTTAACGCATGTTGTAG
TCGGTAAACCATTGACCTCGCATCCCTACAATGCTGCCGGGACAGAGCGA
GATGTGACGGGGGGAAGGGCGGGGAGGAGTATCCATGTAAGAGCATGTTC
GGTAGACCGTTGACCTCACATCCCCACGAAGCCGGGACGGAGGGAGCGAT
GTGCCGGGTTTCCTCCGGGCCAGGCTACGCTTCACAATGACGAACCAGAA
ACTGGCCACCATCCTTGCGGTTGCTGTGCCACACCCGGAATGTCATTGGT
TGATTTGGGCAGGGGAGGAGAGGGACTCTGTACCGCTATTTTTTTTGCTT
ACAGGGGACAGTGGGATATTGGTAATCACAGTTTTTTTGTCCGAGCAGTC
TTTGCACTTGCTTGCGAACAGTTTGGAAAATTTGGGACCATTGGTAAGGT
AATATACTCTGGTGGCCAGTTCCGCAGCTCGTGCAGGGAAACACCGAGCC
CCTTGCCGAAATCTCATGGCTTTGCCGACGGTCTGCTTCTACGGAGCAAG
TTTTTGCGCACACAAGAGAGATTCAAGAGATATTCCATTCCTCTCGGCTA
CCGTGAAAACCCCATCTACCATTCCCCCCCCTACGCTGCCCTAAAAAGTG
CTGTGATGCAACAGCAACAGCAACAACCAGGACGGATGAAAACTGAAACT
ATGTACAGTTTCCTCCTTTATCGCAAAGCCCATGACCACCACCACCACCA
CGAGCAACAGCAACAACGTCACGATGGCCAATGTGCTCACGCGCTCGGCG
ATGCATCGTAGGCGGCGAAAGACCAAGCGTATGCATCCAGCAGCACAGCA
GTTCTCGGGTGGGTCCCGAGCGGGCCCTCCTTTCCGGCCTCTCACCGGTC
CACAACCAACCGCCGCCGCCACTTTTTTTTCTTTCTTCTCCCGTTATGCG
CGCGTACAAAAGGCTGAAGCACAGCGTGGGCCAAAAGTCTCGGACATGGC
CCCAGCTAGCGGCAGCCACAGCGGCGGCGGCATCAAACACCTCCACAGGG
GAAGAAAGCCTCCTGGAATCGCCGCCGAACACACCGGAGTTTGGGTCGGG
GAAGAGGATGGGGAGCAATCACGACAGAGGGTCGGGCGGCAAGCGGGAGC
GGTCACAGCTGAGGGCGACGTTCCCGGGAGAGCCGCCACTAGACGCCGTG
TCTCCAGCGAGGGGGGGCTCGACGGGGAGATTAGCAGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1307:32316..33904-

>mRNA_E-siliculosus-1a_F_contig1307.1868.1 ID=mRNA_E-siliculosus-1a_F_contig1307.1868.1|Name=mRNA_E-siliculosus-1a_F_contig1307.1868.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=840bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1307:32316..33904- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGTTCCGAGGTCCGTTTTCCCCCTGGGTGCCCGCCCTAGGCACCGCGA
TAAGCTGGATCCTTTTGACCCAGCTAAGCTGGGCGAGTTTGCGGTGGACC
CTGTGGGCGGTGGGGGCGGTTTCCTTGTGGTACTTCACGTACGGGGCGTT
CCGAGGTCCGTTTTCCCCCTGGGTGCCCGCCCTAGGCACCGCGATAAGCT
GGATCCTTTTGACCCAGCTAAGCTGGGCGAGTTTGCGGTGGACCCTGTGG
GCGGTGGGGGCGGTTTCCTTGTGGTACTTCACGTACGGGCTGAAGCACAG
CGTGGGCCAAAAGTCTCGGACATGGCCCCAGCTAGCGGCAGCCACAGCGG
CGGCGGCATCAAACACCTCCACAGGGGAAGAAAGCCTCCTGGAATCGCCG
CCGAACACACCGGAGTTTGGGTCGGGGAAGAGGATGGGGAGCAATCACGA
CAGAGGGTCGGGCGGCAAGCGGGAGCGGTCACAGCTGAGGGCGACGTTCC
CGGGAGAGCCGCCACTAGACGCCGTGTCTCCAGCGAGGGGGGGCTCGACG
GGGAGATTAGCAGGGCTGAAGCACAGCGTGGGCCAAAAGTCTCGGACATG
GCCCCAGCTAGCGGCAGCCACAGCGGCGGCGGCATCAAACACCTCCACAG
GGGAAGAAAGCCTCCTGGAATCGCCGCCGAACACACCGGAGTTTGGGTCG
GGGAAGAGGATGGGGAGCAATCACGACAGAGGGTCGGGCGGCAAGCGGGA
GCGGTCACAGCTGAGGGCGACGTTCCCGGGAGAGCCGCCACTAGACGCCG
TGTCTCCAGCGAGGGGGGGCTCGACGGGGAGATTAGCAGG
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