mRNA_E-siliculosus-1a_F_contig1306.1864.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1306.1864.1 vs. uniprot
Match: D7FHS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS7_ECTSI) HSP 1 Score: 667 bits (1722), Expect = 9.270e-237 Identity = 376/427 (88.06%), Postives = 377/427 (88.29%), Query Frame = 1
Query: 1 MSALFDDAERFDSLIVVGDTVRRVKDATEEHVGPGAYSPSMAKSKDFGHIGVSTSRRSNMDPPLSPRSTEHQRHVTGSVVRDGVWFHPSPFLAAGPGPGAYSPSIISSDYERGRTAKPSSGAVGRQAWDLRGSAGGIPLSNFRNGFSVSSSMGTTPRMVDFAQVALRDGVLLLRSANDGHRSNGIGPGEYHGVSNGQDPMTKRSYNMRAQSSQIRRERSLSFSGTSSTAKAFLSLASSMARTAPTRSNKEAASCRPDLHLLARNTYPAPGGVGGRGGDGRSASPGKERRCVSPASAMLSSMRGRAAATTNGNGAAATFGFRSGGMSTDTGSRSLSPKTNRGRSGFAIRGAAGGRYGRGDGIGGVGRGPATFHPISQQXXXXXXXXXX-RQARTTSSGASRGCRSLSPRGRDGGGRPVGGGRVSKATR 1278
MSALFDDAERFDSLIVVGDTVRRVKDATEEHVGPGAYSPSMAKSKDFGHIGVSTSRRSNMDPPLSPRSTEHQRH TGSVVRDGVWFHPSPFLAAGPGPGAYSPSIISSD+ERGRTAKPSSGAVGRQAWDLRGSAGG PLSNFRNGFSVSSSMGTTPRMVDFAQVALRDGVLLLRSANDGHRSNGIGPGEYHGVSNGQDPMTKRSYNMRAQSSQIRRERSLSFSGTSSTAKAFLSLASSMARTAPTRSNKEAASCRPDLHLL RNTYPAPGGVGGRGGDGRS SPGKERR TDTGSRSLSPK NRGRSGFAIRGAAGGRYGRGDGIGGVG GPATFHPISQQXXXXXXXXXX RQARTTSSGASR CRSLSPRGRD GGRPVGGGR S R
Sbjct: 1 MSALFDDAERFDSLIVVGDTVRRVKDATEEHVGPGAYSPSMAKSKDFGHIGVSTSRRSNMDPPLSPRSTEHQRHATGSVVRDGVWFHPSPFLAAGPGPGAYSPSIISSDHERGRTAKPSSGAVGRQAWDLRGSAGGTPLSNFRNGFSVSSSMGTTPRMVDFAQVALRDGVLLLRSANDGHRSNGIGPGEYHGVSNGQDPMTKRSYNMRAQSSQIRRERSLSFSGTSSTAKAFLSLASSMARTAPTRSNKEAASCRPDLHLLGRNTYPAPGGVGGRGGDGRSTSPGKERR-------------------------------------TDTGSRSLSPKANRGRSGFAIRGAAGGRYGRGDGIGGVGHGPATFHPISQQXXXXXXXXXXXRQARTTSSGASRECRSLSPRGRDSGGRPVGGGRASPPLR 390
BLAST of mRNA_E-siliculosus-1a_F_contig1306.1864.1 vs. uniprot
Match: A0A6H5JYF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF7_9PHAE) HSP 1 Score: 306 bits (783), Expect = 3.900e-96 Identity = 165/174 (94.83%), Postives = 167/174 (95.98%), Query Frame = 1
Query: 454 MGTTPRMVDFAQVALRDGVLLLRSANDGHRSNGIGPGEYHGVSNGQDPMTKRSYNMRAQSSQIRRERSLSFSGTSSTAKAFLSLASSMARTAPTRSNKEAASCRPDLHLLARNTYPAPGGVGGRGGDGRSASPGKERRCVSPASAMLSSMRGRAAATTNGNGAAATFGFRSGGM 975
MGTTPRMVDFAQVALRDGVLLLRSANDGHRSNGIGPGEYHGVSNGQDPMTKRSYNMRAQSSQ+RRERSLSFSGTSSTAKAFLSLASSMART PTRSNKEAASCRPDLHLL RNTYPAPGGVGGRGGDGRS PGKERRCVSPASAMLSS+RGRAAA NGNGAAATFG RSGGM
Sbjct: 1 MGTTPRMVDFAQVALRDGVLLLRSANDGHRSNGIGPGEYHGVSNGQDPMTKRSYNMRAQSSQVRRERSLSFSGTSSTAKAFLSLASSMARTNPTRSNKEAASCRPDLHLLTRNTYPAPGGVGGRGGDGRSTFPGKERRCVSPASAMLSSLRGRAAAAANGNGAAATFGLRSGGM 174 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1306.1864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1306.1864.1 >prot_E-siliculosus-1a_F_contig1306.1864.1 ID=prot_E-siliculosus-1a_F_contig1306.1864.1|Name=mRNA_E-siliculosus-1a_F_contig1306.1864.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=426bp MSALFDDAERFDSLIVVGDTVRRVKDATEEHVGPGAYSPSMAKSKDFGHIback to top mRNA from alignment at E-siliculosus-1a_F_contig1306:27977..34178+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1306.1864.1 ID=mRNA_E-siliculosus-1a_F_contig1306.1864.1|Name=mRNA_E-siliculosus-1a_F_contig1306.1864.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6202bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1306:27977..34178+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1306:27977..34178+ >mRNA_E-siliculosus-1a_F_contig1306.1864.1 ID=mRNA_E-siliculosus-1a_F_contig1306.1864.1|Name=mRNA_E-siliculosus-1a_F_contig1306.1864.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2556bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1306:27977..34178+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |