mRNA_E-siliculosus-1a_F_contig1305.1860.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1860.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 115 bits (289), Expect = 7.600e-28 Identity = 60/91 (65.93%), Postives = 68/91 (74.73%), Query Frame = 1
Query: 61 MTTEGRSGCLDAFVVALNQACNG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPVCTPHTTPNKSTPEVRISSCVPAIE 324
MTT+G S CLDAFVVALNQAC+G RWY STLELQLVSL +CGACR V TLH+RV QTPP LW HTT N +P+V ISS VP ++
Sbjct: 1 MTTKGNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQ 91
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1860.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 111 bits (278), Expect = 4.710e-27 Identity = 56/87 (64.37%), Postives = 64/87 (73.56%), Query Frame = 1
Query: 73 GRSGCLDAFVVALNQACNG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPVCTPHTTPNKSTPEVRISSCVPAIE 324
GRS CL AF+VALNQ CNG RWYASTLELQLVSL CGACR VPTLH+RV+RQTP LW C H T K + E +S+ VPA++
Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQ 99
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1860.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 100 bits (250), Expect = 4.700e-24 Identity = 55/94 (58.51%), Postives = 64/94 (68.09%), Query Frame = 1
Query: 55 VAMT-TEGRSGCLDAFVVALNQACNG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPVCTPHTTPNKSTPEVRISSCVPAIE 324
VAM TEG LD +VALNQAC+G RWY STLELQLVSL LCGACRS LH+ V TPP LW T TTP++ +PEV S+ VPA++
Sbjct: 78 VAMANTEGGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQ 171
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1860.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 6.680e-24 Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 76 RSGCLDAFVVALNQACNG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPVCTPHTTP 273
RS CLDAFVVALNQ C+G RWYASTLELQLVSL CGACR VPTLH+RV+R+TP LW +P TTP
Sbjct: 38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLW---SPRTTP 103
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1860.1 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 1.670e-23 Identity = 48/68 (70.59%), Postives = 52/68 (76.47%), Query Frame = 1
Query: 61 MTTEGRSGCLDAFVVALNQACNGR---WYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPVC 255
M EGR CLDAF+VALNQ C+GR WYASTLELQLVSL CGACR PTLH+RV+RQTP R P C
Sbjct: 1 MNLEGRRKCLDAFIVALNQTCDGRENRWYASTLELQLVSLKFCGACRRFPTLHVRVDRQTP-RKKPTC 67
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1860.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 4.610e-20 Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 61 MTTEGRSGCLDAFVVALNQACNG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPVCTPHTTPNKSTPEVRISSCVPAI 321
M TEG + DAF +AL+QAC G RWY ST ELQL SL +C ACRS PTLH+RV TP LW T PN + +VR+ S VP +
Sbjct: 1 MPTEGYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVV 90
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1860.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.300e-19 Identity = 50/92 (54.35%), Postives = 60/92 (65.22%), Query Frame = 1
Query: 55 VAMTTEGRSGCLDAFVVALNQACNG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPVCTPHTTPNKSTPEVRISSCVPAI 321
+A E R+ CLDAFV+AL+QAC G RWYASTLELQL SL LC ACR+ LH+ V+ QTP LW T T PN + + ISS VP +
Sbjct: 1 MARVIEWRTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVV 92
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1860.1 vs. uniprot
Match: A0A6H5JSE5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE5_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 1.860e-19 Identity = 46/72 (63.89%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 73 GRSGCLDAFVVALNQACNGR---WYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPVCTPHTTPNK 279
G+S CLDAF+V +NQA +GR WYASTLELQLVSLA CGACRS LH+ V+R PP LW +TTPNK
Sbjct: 971 GKSKCLDAFIVTMNQAADGRKQQWYASTLELQLVSLAFCGACRSAKMLHLHVDRGKPPSLWFPHKSYTTPNK 1042
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1860.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 7.300e-18 Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = 1
Query: 73 GRSGCLDAFVVALNQACNGR---WYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPVCTPHTTPNKSTPEVRISSCVPAIE 324
GRS CLDAF+VAL QA +GR WY STLELQLVSL CGACRS + ++++RQTP LW H T K + E I S VPA++
Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQ 111
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1860.1 vs. uniprot
Match: A0A6H5JHB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB0_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 2.020e-15 Identity = 45/86 (52.33%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 73 GRSGCLDAFVVALNQACNGR---WYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPVCTPHTTPNKSTPEVRISSCVPAI 321
G S CLDAF + L+QA GR WY STL+LQ V LALC ACRSVPT H+R++ QTP LW P VR SS VP +
Sbjct: 139 GGSRCLDAFAITLHQAYGGRRGHWYKSTLQLQCVCLALCSACRSVPTWHVRIDDQTPHSLWD------------PNVRTSSRVPVV 212 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1305.1860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1305.1860.1 >prot_E-siliculosus-1a_F_contig1305.1860.1 ID=prot_E-siliculosus-1a_F_contig1305.1860.1|Name=mRNA_E-siliculosus-1a_F_contig1305.1860.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=88bp MTTEGRSGCLDAFVVALNQACNGRWYASTLELQLVSLALCGACRSVPTLHback to top mRNA from alignment at E-siliculosus-1a_F_contig1305:11096..13833+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1305.1860.1 ID=mRNA_E-siliculosus-1a_F_contig1305.1860.1|Name=mRNA_E-siliculosus-1a_F_contig1305.1860.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2738bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1305:11096..13833+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1305:11096..13833+ >mRNA_E-siliculosus-1a_F_contig1305.1860.1 ID=mRNA_E-siliculosus-1a_F_contig1305.1860.1|Name=mRNA_E-siliculosus-1a_F_contig1305.1860.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1305:11096..13833+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |