mRNA_E-siliculosus-1a_F_contig1304.1855.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1855.1 vs. uniprot
Match: D8LGT6_ECTSI (Dynein light chain 1, cytoplasmic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGT6_ECTSI) HSP 1 Score: 466 bits (1199), Expect = 5.100e-148 Identity = 316/350 (90.29%), Postives = 325/350 (92.86%), Query Frame = 2
Query: 401 MRMPGCAAGSWADFVIFVFGCGGSRKEIAAVHGRSAAERPAATGDAFDPAKPPLLLQQGDLSRGVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAVGKIEPVFCTTNEAAVGIARNXXXXXXXXXGKKSIPKEAEGSRTRDGGALALEGKTGGDKSNRSGQQQPKEGQQQQLRQRRAKPSYRRKSSGVPHTAAAFGKATIAPRRHSVDSAESPALRAPSSSVTPLEQNKQLVRHLSNSRSFGSFGSFNTAGEGDYSVRNSAFTRTPGLRRKRVERVVILAADMTDQMQQDAKESTARAMEESADHEDIAAYIKKDFDEQHG 1450
MRMPGCAAGSWADFVIFVFGCGGSRKE+AAVHGRSAAERPAATGDAFDPAKPPLLLQQGDLSRGVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VVA+GKIEP+FCTTNEAAVGIARN GKKSIPKEAEG RTR+GGALALEG+TGGDKS SGQQQPKEGQ QQLRQRRAKPSY SS VP TAAAFGKA IAPRRHSVDSAESPAL+A SSSVTPLEQNKQLVRHLSNSRSFGS GSFNTAGEGDYSVRNSAFTRTPGLRRKRVERVVILAADM +QMQ+DAKESTARAMEES DHEDIAAYIKKDFDE+HG
Sbjct: 1 MRMPGCAAGSWADFVIFVFGCGGSRKEVAAVHGRSAAERPAATGDAFDPAKPPLLLQQGDLSRGVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-VVALGKIEPIFCTTNEAAVGIARNNSHHKIVDGGKKSIPKEAEGPRTREGGALALEGETGGDKSISSGQQQPKEGQHQQLRQRRAKPSYXXXSSAVPRTAAAFGKAAIAPRRHSVDSAESPALQATSSSVTPLEQNKQLVRHLSNSRSFGSLGSFNTAGEGDYSVRNSAFTRTPGLRRKRVERVVILAADMAEQMQEDAKESTARAMEESGDHEDIAAYIKKDFDERHG 349
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1855.1 vs. uniprot
Match: A0A6H5KIG7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIG7_9PHAE) HSP 1 Score: 241 bits (616), Expect = 1.300e-69 Identity = 133/165 (80.61%), Postives = 137/165 (83.03%), Query Frame = 2
Query: 1046 GVPHTAAAFGKATIAPRRHSVDSAESPALRAPSSSVTPLEQNKQLVRHLSNSRSFGSFGSFNTAGEGDYSVRNSAFTRTPGLRRKRVERVVILAADMTDQMQQDAKESTARAMEESADHEDIAAYIKKDFDEQHGAKWHCIVGKHFGSFVTAESNSFVHLHLGKV 1540
GV HTAAAFGKA IAPRRHSVDSAESPAL+APSSS NKQLVRHL+NSRSFGS GSFNTAGE DYSVRNSAFTRTPGLRRKR R + DAKESTARAMEES DHEDIAAYIKK FDEQHGAKWHCIVGKHFGSFVTA+SN FVHLHLGKV
Sbjct: 2 GVRHTAAAFGKAAIAPRRHSVDSAESPALQAPSSS------NKQLVRHLNNSRSFGSLGSFNTAGESDYSVRNSAFTRTPGLRRKRQARQT---RSHRSTLAADAKESTARAMEESGDHEDIAAYIKKAFDEQHGAKWHCIVGKHFGSFVTAQSNGFVHLHLGKV 157
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1855.1 vs. uniprot
Match: A0A6H5KHL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL3_9PHAE) HSP 1 Score: 206 bits (525), Expect = 6.790e-57 Identity = 156/218 (71.56%), Postives = 165/218 (75.69%), Query Frame = 2
Query: 401 MRMPGCAAGSWADFVIFVFGCGGSRKEIAAVHGRSAAERPAATGDAFDPAKPPLLLQQGDLSRGVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------VVAVGKIEPVFCTTNEAAVGIARNXXXXXXXXXGKKSIPKEAEGSRTRDGGALALEGKTGGDKSNRSGQQQPKEGQQQQLRQRRAKPSYR 1033
M MPGCAAGSWADF+IFVFGCGG RKE+AAV GRSAAER AATGDAFDPAKPP LLQ G+ RGVF XXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX VVAVGKIEPVFCTTNEAA+G+AR+ GKK IP++ EG TRDGGALALEG+TGGDKSN SGQQQPK GQQQQLRQRRAKPSYR
Sbjct: 1 MPMPGCAAGSWADFLIFVFGCGGRRKEVAAVQGRSAAERTAATGDAFDPAKPPPLLQHGNFGRGVFFFAAGSGGXXXXXXXXXXXXSVTTTPSRDSDDAYSXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAVGKIEPVFCTTNEAALGMARSNNHNKIVGGGKKRIPQDTEGPWTRDGGALALEGETGGDKSNSSGQQQPKAGQQQQLRQRRAKPSYR 218
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1855.1 vs. uniprot
Match: A0A6P4I1A9_DROKI (Dynein light chain n=2 Tax=montium subgroup TaxID=32352 RepID=A0A6P4I1A9_DROKI) HSP 1 Score: 96.3 bits (238), Expect = 5.010e-20 Identity = 47/84 (55.95%), Postives = 64/84 (76.19%), Query Frame = 2
Query: 1310 RVVILAADMTDQMQQDAKESTARAMEESADHEDIAAYIKKDFDEQHGAKWHCIVGKHFGSFVTAESNSFVHLHLGKVAVLLFKA 1561
+ VI ADM ++MQQDA ES +AME+ +D+AAYIKK+FD ++ WHCIVG HFGS+VT E+ FV+ +LG++AVLLFK+
Sbjct: 5 KAVIKNADMCEEMQQDAIESATQAMEKHNIEKDVAAYIKKEFDRKYHPTWHCIVGHHFGSYVTHETRHFVYFYLGQLAVLLFKS 88
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1855.1 vs. uniprot
Match: A0A090M3C5_OSTTA (Dynein light chain n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M3C5_OSTTA) HSP 1 Score: 96.3 bits (238), Expect = 5.310e-20 Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 2
Query: 1307 ERVVILAADMTDQMQQDAKESTARAMEESADHEDIAAYIKKDFDEQHGAKWHCIVGKHFGSFVTAESNSFVHLHLGKVAVLLFKA 1561
++ VI AADM D++Q DA ++ AME+ +DIAAY+KK+FD +HG WHCIVG++FGS+VT ES SF++ ++ VA LLFKA
Sbjct: 6 DKAVIKAADMPDEVQDDAVATSMEAMEKFNVEKDIAAYVKKEFDRKHGPTWHCIVGRNFGSYVTHESGSFIYYYVANVAFLLFKA 90
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1855.1 vs. uniprot
Match: A0A2U3ZPC9_ODORO (Dynein light chain n=5 Tax=Amniota TaxID=32524 RepID=A0A2U3ZPC9_ODORO) HSP 1 Score: 94.0 bits (232), Expect = 3.240e-19 Identity = 43/85 (50.59%), Postives = 66/85 (77.65%), Query Frame = 2
Query: 1310 RVVILAADMTDQMQQDAKESTARAMEESADHEDIAAYIKKDFDEQHGAKWHCIVGKHFGSFVTAESNSFVHLHLGKVAVLLFKAD 1564
+ VI DM+++MQQD+ E +A+E+ +DIAA+IKK+FDE++ WHCIVG++FGS+VT E+ F++ +LG+VA+LLFK+D
Sbjct: 5 KAVIKNTDMSEEMQQDSVECATQALEKYNVEKDIAAHIKKEFDEKYNTAWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSD 89
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1855.1 vs. uniprot
Match: Q8T3S8_BRABE (Dynein light chain (Fragment) n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=Q8T3S8_BRABE) HSP 1 Score: 93.6 bits (231), Expect = 3.930e-19 Identity = 44/84 (52.38%), Postives = 66/84 (78.57%), Query Frame = 2
Query: 1310 RVVILAADMTDQMQQDAKESTARAMEESADHEDIAAYIKKDFDEQHGAKWHCIVGKHFGSFVTAESNSFVHLHLGKVAVLLFKA 1561
+ VI ADM+++MQQDA + +A+E+ +DIAA+IKK+FDE++ WHCIVG++FGS+VT E+ F++ +LG+VAVLLFK+
Sbjct: 1 KAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDEKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 84
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1855.1 vs. uniprot
Match: G4VB75_SCHMA (Dynein light chain n=7 Tax=Schistosoma TaxID=6181 RepID=G4VB75_SCHMA) HSP 1 Score: 93.6 bits (231), Expect = 4.560e-19 Identity = 42/84 (50.00%), Postives = 66/84 (78.57%), Query Frame = 2
Query: 1310 RVVILAADMTDQMQQDAKESTARAMEESADHEDIAAYIKKDFDEQHGAKWHCIVGKHFGSFVTAESNSFVHLHLGKVAVLLFKA 1561
+ V+ ADM+D MQQDA + A+A+E+ + +DIAA+IKK+FD+++ WHCIVG++FGS+VT E+ F++ ++G VA+LLFK+
Sbjct: 6 KAVVKNADMSDDMQQDAVDCAAQALEKYSVEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYMGNVAILLFKS 89
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1855.1 vs. uniprot
Match: A0A0L1KZV9_9EUGL (Dynein light chain n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KZV9_9EUGL) HSP 1 Score: 93.2 bits (230), Expect = 6.410e-19 Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 2
Query: 1313 VVILAADMTDQMQQDAKESTARAMEESADHEDIAAYIKKDFDEQHGAKWHCIVGKHFGSFVTAESNSFVHLHLGKVAVLLFKA 1561
+ + + DMT+ +QQDA+E T +A+E+ DIA Y+KK FDE HG WHCIVG++FGSFVT E F++ ++ +AVLLF+A
Sbjct: 8 ITVKSTDMTESLQQDAREITMQALEKHTIQRDIAKYVKKHFDELHGPTWHCIVGRNFGSFVTHEDGCFIYFYVHDIAVLLFRA 90
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1855.1 vs. uniprot
Match: A0A3P6THM2_DIBLA (Dynein light chain n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P6THM2_DIBLA) HSP 1 Score: 92.4 bits (228), Expect = 1.190e-18 Identity = 41/85 (48.24%), Postives = 65/85 (76.47%), Query Frame = 2
Query: 1307 ERVVILAADMTDQMQQDAKESTARAMEESADHEDIAAYIKKDFDEQHGAKWHCIVGKHFGSFVTAESNSFVHLHLGKVAVLLFKA 1561
++ ++ ADM++ MQQDA ++ A+++ +DIAAYIKK FD+ HG WHCIVG++FGS+VT E+ F++ ++G+VA+LLFK+
Sbjct: 6 DQAIVKNADMSEDMQQDAIQAGKEALKQYNIEKDIAAYIKKKFDKDHGPTWHCIVGRNFGSYVTHETKQFIYFYMGQVAILLFKS 90 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1304.1855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1304.1855.1 >prot_E-siliculosus-1a_F_contig1304.1855.1 ID=prot_E-siliculosus-1a_F_contig1304.1855.1|Name=mRNA_E-siliculosus-1a_F_contig1304.1855.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=390bp MRMPGCAAGSWADFVIFVFGCGGSRKEIAAVHGRSAAERPAATGDAFDPAback to top mRNA from alignment at E-siliculosus-1a_F_contig1304:13024..22165+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1304.1855.1 ID=mRNA_E-siliculosus-1a_F_contig1304.1855.1|Name=mRNA_E-siliculosus-1a_F_contig1304.1855.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9142bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1304:13024..22165+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1304:13024..22165+ >mRNA_E-siliculosus-1a_F_contig1304.1855.1 ID=mRNA_E-siliculosus-1a_F_contig1304.1855.1|Name=mRNA_E-siliculosus-1a_F_contig1304.1855.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2340bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1304:13024..22165+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |