mRNA_E-siliculosus-1a_F_contig13032.1852.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13032.1852.1
Unique NamemRNA_E-siliculosus-1a_F_contig13032.1852.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig13032.1852.1 vs. uniprot
Match: A0A6H5JZM6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.870e-16
Identity = 58/120 (48.33%), Postives = 70/120 (58.33%), Query Frame = 1 
Query:   28 PPVAEPRDPP--SGGHVEDKGFAPPNVHGTAATPPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNMTSTISRIQRVVDNHLDLLGEGRISELPPHIVTLMDRLFDTARQNRGRT 381
            PPVAE RD P  SGGHVE KGF PP+       P          XXXXXX                   T++TST+S+IQ VVD HLDL+ +GR+ +LP H+V LMDR+F+  RQNRGRT
Sbjct:   33 PPVAEARDTPPTSGGHVEAKGFDPPS-------PXXXNVQDLVIXXXXXXSVASTAAPSVGAPSASSSSTDLTSTLSKIQSVVDRHLDLVTDGRLEQLPDHVVQLMDRMFEHHRQNRGRT 145
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13032.1852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZM6_9PHAE5.870e-1648.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13032contigE-siliculosus-1a_F_contig13032:3..1404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size561
Model size563
Exons2
Ec32 orthologEc-05_000420.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927826.3916388-CDS-E-siliculosus-1a_F_contig13032:4..2171622927826.3916388-CDS-E-siliculosus-1a_F_contig13032:4..217Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13032 5..217 -
1696318696.6453612-CDS-E-siliculosus-1a_F_contig13032:4..2171696318696.6453612-CDS-E-siliculosus-1a_F_contig13032:4..217Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13032 5..217 -
1622927826.4676054-CDS-E-siliculosus-1a_F_contig13032:1056..14041622927826.4676054-CDS-E-siliculosus-1a_F_contig13032:1056..1404Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13032 1057..1404 -
1696318696.6543708-CDS-E-siliculosus-1a_F_contig13032:1056..14041696318696.6543708-CDS-E-siliculosus-1a_F_contig13032:1056..1404Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13032 1057..1404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13032.1852.1prot_E-siliculosus-1a_F_contig13032.1852.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13032 5..1404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13032.1852.1

>prot_E-siliculosus-1a_F_contig13032.1852.1 ID=prot_E-siliculosus-1a_F_contig13032.1852.1|Name=mRNA_E-siliculosus-1a_F_contig13032.1852.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=187bp
PPADPQLPPPPVAEPRDPPSGGHVEDKGFAPPNVHGTAATPPPSPPSPSP
SATPTPSVTPVTTPSTGAPSIAPSTTTNMTSTISRIQRVVDNHLDLLGEG
RISELPPHIVTLMDRLFDTARQNRGRTQSCRSAPTSGGGPSTTSRSRHAT
ATTAAVATPPAPPQGSARGARTRRARSPSGTRRRHVF
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mRNA from alignment at E-siliculosus-1a_F_contig13032:3..1404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13032.1852.1 ID=mRNA_E-siliculosus-1a_F_contig13032.1852.1|Name=mRNA_E-siliculosus-1a_F_contig13032.1852.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1402bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13032:3..1404- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGCCGGCGGACCCACAACTGCCCCCCCCCCCCGTCGCCGAACCACGCGA
CCCTCCTTCTGGCGGCCACGTCGAGGACAAAGGGTTCGCTCCGCCGAACG
TCCACGGTACTGCGGCCACTCCTCCACCGTCGCCCCCGTCCCCGTCCCCG
TCCGCGACTCCCACGCCGTCCGTGACTCCAGTCACCACACCGTCCACTGG
TGCCCCATCGATCGCACCGTCAACGACGACAAACATGACCAGTACCATCA
GCCGGATCCAGCGGGTGGTGGACAACCATCTTGATCTCCTGGGAGAGGGG
CGAATCTCCGAACTTCCCCCTCACATCGTCACCCTGATGGACCGACTGGT
AAGCTTGCAGGAGGCCAATAGGGCAGCTGAGCGTGTGTCCCAGCCTGTCT
TGTCGGGTTCGTCCCACACTCCGTCTGTCCCGGATTTGACTAGGTCATTT
GCCGCTGCGTTGTCGCACCAGAAACATGTCGTGTTGGGCCCCACTGATGT
CAAACCAATCCCTCGCCTCGATGGCACGAGCGAGGTTGATGTCACTTCTG
TCCTGTCCCAGTTTCGCTTGATTGATGGCTTTAAAGTGAAATGCGCTAAC
CCCACCAACATCTCTGTCACCGAACTCGAAAAACGCGGTGATGCGGTCGC
GTTCGAATCGTTCTCCCTCATCTGTGACGGGCCCGTGTTGCAGATGTATC
AAGAGATGATGTCGGGTAAGATTGATTGTTCCTCCACTGCTGTCTCCCAC
GGGACTGTCGAACAAGCAAACTCTTACCCCCCGCCTGCCACTTGGGTAGA
GCTCAAAACCGCTCTCCTACACCGCTCATGCCCTCCAACATAGTCGAGGA
AACCGCACTTAGTCTTGTCAACCTTCGTCAATCAGGCAATGAGAACGTTA
GCTCGTATGCCCTTCGTCTTCAAACAGAATGCACTCGGTTTGAACAAGCT
GTCGAACGAATCACTCCGGGTCGCTCGCCGTATGAAGTGCTCGTGGTAAT
TCTGTTCCAAAACGGCTTTGTCCCGAACATTCGGTCCAAGGTACTAGACA
AAAAACCTGTCAGAGCCCTTCGGGATGCTATCGATCGCGCTCGCCGTACC
GAGTCAGCGAATCTGTCTGGTGAAACCCCCGCTGTCAGCGCTGTTTCACT
CACCCCTGTCACGTCCCGCTCCCGTCTGTCTCAAAAGTTTGACACCGCGC
GGCAGAACCGGGGCCGCACCCAGTCATGCAGGTCGGCACCCACGTCAGGT
GGTGGTCCGTCCACCACCAGCAGGAGCCGCCACGCAACGGCAACAACCGC
GGCGGTGGCAACTCCTCCCGCTCCACCCCAAGGGAGCGCCCGCGGTGCTC
GCACCCGTCGTGCAAGAAGCCCCTCGGGCACACGACGGAGACATGTTTTC
AA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13032:3..1404-

>mRNA_E-siliculosus-1a_F_contig13032.1852.1 ID=mRNA_E-siliculosus-1a_F_contig13032.1852.1|Name=mRNA_E-siliculosus-1a_F_contig13032.1852.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1122bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13032:3..1404- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGCCGGCGGACCCACAACTGCCCCCCCCCCCCGTCGCCGAACCACGCGA
CCCTCCTTCTGGCGGCCACGTCGAGGACAAAGGGTTCGCTCCGCCGAACG
TCCACGGTACTGCGGCCACTCCTCCACCGTCGCCCCCGTCCCCGTCCCCG
TCCGCGACTCCCACGCCGTCCGTGACTCCAGTCACCACACCGTCCACTGG
TGCCCCATCGATCGCACCGTCAACGACGACAAACATGACCAGTACCATCA
GCCGGATCCAGCGGGTGGTGGACAACCATCTTGATCTCCTGGGAGAGGGG
CGAATCTCCGAACTTCCCCCTCACATCGTCACCCTGATGGACCGACTGCC
GCCGGCGGACCCACAACTGCCCCCCCCCCCCGTCGCCGAACCACGCGACC
CTCCTTCTGGCGGCCACGTCGAGGACAAAGGGTTCGCTCCGCCGAACGTC
CACGGTACTGCGGCCACTCCTCCACCGTCGCCCCCGTCCCCGTCCCCGTC
CGCGACTCCCACGCCGTCCGTGACTCCAGTCACCACACCGTCCACTGGTG
CCCCATCGATCGCACCGTCAACGACGACAAACATGACCAGTACCATCAGC
CGGATCCAGCGGGTGGTGGACAACCATCTTGATCTCCTGGGAGAGGGGCG
AATCTCCGAACTTCCCCCTCACATCGTCACCCTGATGGACCGACTGTTTG
ACACCGCGCGGCAGAACCGGGGCCGCACCCAGTCATGCAGGTCGGCACCC
ACGTCAGGTGGTGGTCCGTCCACCACCAGCAGGAGCCGCCACGCAACGGC
AACAACCGCGGCGGTGGCAACTCCTCCCGCTCCACCCCAAGGGAGCGCCC
GCGGTGCTCGCACCCGTCGTGCAAGAAGCCCCTCGGGCACACGACGGAGA
CATGTTTTCTTTGACACCGCGCGGCAGAACCGGGGCCGCACCCAGTCATG
CAGGTCGGCACCCACGTCAGGTGGTGGTCCGTCCACCACCAGCAGGAGCC
GCCACGCAACGGCAACAACCGCGGCGGTGGCAACTCCTCCCGCTCCACCC
CAAGGGAGCGCCCGCGGTGCTCGCACCCGTCGTGCAAGAAGCCCCTCGGG
CACACGACGGAGACATGTTTTC
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