mRNA_E-siliculosus-1a_F_contig13031.1851.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig13031.1851.1
Unique NamemRNA_E-siliculosus-1a_F_contig13031.1851.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: D7FHT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT6_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.610e-27
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1
Query:   85 RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 243
            RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL
Sbjct:  266 RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 318          
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A6H5JHC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.520e-26
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1
Query:   85 RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 243
            RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL
Sbjct: 1110 RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 1162          
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A835ZL14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL14_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.360e-15
Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   82 RRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVE--GCGVENVDL 243
            +RW+R RS VAGRL+N YS++D++LALVYRSKSW VGVAG S VE  G  VEN+DL
Sbjct:  690 KRWRRARSVVAGRLVNCYSTKDFVLALVYRSKSWKVGVAGVSPVEAPGLSVENLDL 745          
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A7S3JRE0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRE0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.640e-13
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1
Query:   46 VFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSV-GVAGTSRV 213
            VFL  P  A+ H+RW + R  VAGRLINGYSSRDW+L LVYRSK+WS+ GVAG   V
Sbjct:  558 VFLGAPL-AARHQRWLQARRVVAGRLINGYSSRDWMLRLVYRSKAWSLCGVAGAEPV 613          
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A024G2C1_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G2C1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.770e-13
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   19 SCVFFLLLQVFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 243
            +C+  +   VFL  P PAS    W+ +RS VAGR+ING+S  DW+LAL+YR + W+   AG + +E   +ENVDL
Sbjct:  524 NCLGIIENAVFLGTPVPASVEE-WESIRSVVAGRIINGFSKNDWMLALMYRYQGWAFTCAGIAPLEAKYIENVDL 597          
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A8J2SF46_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SF46_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 4.390e-12
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   46 VFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSV-GVAGTSRV--EGCG-----VENVDL 243
            V L  P  A+  R W+  R  V+GRLINGYS+RDW+L LVYR+K+WS+ GVAGT+ V  E  G     +ENVDL
Sbjct:  490 VLLGAPVSATSER-WRAARGVVSGRLINGYSTRDWMLRLVYRAKAWSIAGVAGTTPVVPEHAGQDAPMIENVDL 562          
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A2P4Y8C6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8C6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 7.660e-12
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   46 VFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 243
            V L  P P +    W   R  V+GRLINGYS +DW+L ++YR + WS+  AG + ++  GVENVDL
Sbjct:  124 VLLGSPVPTARED-WANARRVVSGRLINGYSDKDWMLGVMYRYQGWSLNSAGIAPIDIAGVENVDL 188          
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A177DRW2_ALTAL (DUF726-domain-containing protein (Fragment) n=1 Tax=Alternaria alternata TaxID=5599 RepID=A0A177DRW2_ALTAL)

HSP 1 Score: 68.6 bits (166), Expect = 1.070e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   46 VFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGC-GVENVDL 243
            V +  P+PA+  +RW+++RS VAGR++N YS  D++L  +YRS    VGVAG   VEG  GVENVD+
Sbjct:  175 VLMGTPAPANP-KRWRQIRSVVAGRIVNVYSKEDYVLGFLYRSAKLQVGVAGLQEVEGVHGVENVDV 240          
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A4Q4NT33_ALTAL (Uncharacterized protein n=7 Tax=Alternaria sect. Alternaria TaxID=2499237 RepID=A0A4Q4NT33_ALTAL)

HSP 1 Score: 68.6 bits (166), Expect = 1.140e-11
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   46 VFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGC-GVENVDL 243
            V +  P+PA+  +RW+++RS VAGR++N YS  D++L  +YRS    VGVAG   VEG  GVENVD+
Sbjct:  555 VLMGTPAPANP-KRWRQIRSVVAGRIVNVYSKEDYVLGFLYRSAKLQVGVAGLQEVEGVHGVENVDV 620          
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A7S3HSM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSM4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.500e-11
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   85 RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 243
            +W++ R+ V+GRL+N Y   DWLLA  YR   W + VAG SRV+  GVENVDL
Sbjct:   22 KWQKARAVVSGRLVNCYWGFDWLLAFCYRYLEWGISVAGLSRVQMPGVENVDL 74          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHT6_ECTSI1.610e-27100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHC2_9PHAE1.520e-26100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZL14_9STRA6.360e-1567.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3JRE0_9STRA3.640e-1364.91Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A024G2C1_9STRA6.770e-1346.67Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A8J2SF46_9STRA4.390e-1254.05Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2P4Y8C6_9STRA7.660e-1246.97Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A177DRW2_ALTAL1.070e-1150.75DUF726-domain-containing protein (Fragment) n=1 Ta... [more]
A0A4Q4NT33_ALTAL1.140e-1150.75Uncharacterized protein n=7 Tax=Alternaria sect. A... [more]
A0A7S3HSM4_9STRA1.500e-1154.72Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig13031contigE-siliculosus-1a_F_contig13031:1045..1287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size243
Model size243
Exons1
Ec32 orthologEc-07_006740.1
Ec32 ortholog descriptionProtein of unknown function DUF726
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko03009
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG2385@1,KOG2385@2759
EggNOG free text desc.Protein of unknown function (DUF726)
GOsGO:0003674,GO:0003824,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0044425,GO:0051179,GO:0051234
KEGG koko:K14773
Preferred nameTMCO4
Seed eggNOG ortholog2880.D7FHT6
Seed ortholog evalue1.6e-22
Seed ortholog score111.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927826.3538253-CDS-E-siliculosus-1a_F_contig13031:1044..12871622927826.3538253-CDS-E-siliculosus-1a_F_contig13031:1044..1287Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13031 1045..1287 +
1696318696.6335733-CDS-E-siliculosus-1a_F_contig13031:1044..12871696318696.6335733-CDS-E-siliculosus-1a_F_contig13031:1044..1287Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig13031 1045..1287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig13031.1851.1prot_E-siliculosus-1a_F_contig13031.1851.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig13031 1045..1287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig13031.1851.1

>prot_E-siliculosus-1a_F_contig13031.1851.1 ID=prot_E-siliculosus-1a_F_contig13031.1851.1|Name=mRNA_E-siliculosus-1a_F_contig13031.1851.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=81bp
MHISWISCVFFLLLQVFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDW
LLALVYRSKSWSVGVAGTSRVEGCGVENVDL
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mRNA from alignment at E-siliculosus-1a_F_contig13031:1045..1287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig13031.1851.1 ID=mRNA_E-siliculosus-1a_F_contig13031.1851.1|Name=mRNA_E-siliculosus-1a_F_contig13031.1851.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=243bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13031:1045..1287+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATATTTCATGGATATCATGCGTGTTTTTTTTATTACTACAAGTGTT TCTTGCCCCCCCCTCCCCGGCGTCTCATCATCGCAGGTGGAAGCGGGTGC GCAGCGCCGTAGCCGGGCGGCTGATCAACGGCTACAGCTCCAGGGACTGG CTCCTGGCACTCGTGTACCGTAGCAAGTCGTGGAGCGTTGGCGTCGCGGG AACGTCCAGGGTGGAGGGGTGCGGCGTCGAAAACGTGGATCTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13031:1045..1287+

>mRNA_E-siliculosus-1a_F_contig13031.1851.1 ID=mRNA_E-siliculosus-1a_F_contig13031.1851.1|Name=mRNA_E-siliculosus-1a_F_contig13031.1851.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13031:1045..1287+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATATTTCATGGATATCATGCGTGTTTTTTTTATTACTACAAGTGTT
TCTTGCCCCCCCCTCCCCGGCGTCTCATCATCGCAGGTGGAAGCGGGTGC
GCAGCGCCGTAGCCGGGCGGCTGATCAACGGCTACAGCTCCAGGGACTGG
CTCCTGGCACTCGTGTACCGTAGCAAGTCGTGGAGCGTTGGCGTCGCGGG
AACGTCCAGGGTGGAGGGGTGCGGCGTCGAAAACGTGGATCTGATGCATA
TTTCATGGATATCATGCGTGTTTTTTTTATTACTACAAGTGTTTCTTGCC
CCCCCCTCCCCGGCGTCTCATCATCGCAGGTGGAAGCGGGTGCGCAGCGC
CGTAGCCGGGCGGCTGATCAACGGCTACAGCTCCAGGGACTGGCTCCTGG
CACTCGTGTACCGTAGCAAGTCGTGGAGCGTTGGCGTCGCGGGAACGTCC
AGGGTGGAGGGGTGCGGCGTCGAAAACGTGGATCTG
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