mRNA_E-siliculosus-1a_F_contig13031.1851.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: D7FHT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT6_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.610e-27 Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1
Query: 85 RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 243
RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL
Sbjct: 266 RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 318
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A6H5JHC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC2_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.520e-26 Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1
Query: 85 RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 243
RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL
Sbjct: 1110 RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 1162
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A835ZL14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL14_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 6.360e-15 Identity = 38/56 (67.86%), Postives = 46/56 (82.14%), Query Frame = 1
Query: 82 RRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVE--GCGVENVDL 243
+RW+R RS VAGRL+N YS++D++LALVYRSKSW VGVAG S VE G VEN+DL
Sbjct: 690 KRWRRARSVVAGRLVNCYSTKDFVLALVYRSKSWKVGVAGVSPVEAPGLSVENLDL 745
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A7S3JRE0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRE0_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.640e-13 Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 46 VFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSV-GVAGTSRV 213
VFL P A+ H+RW + R VAGRLINGYSSRDW+L LVYRSK+WS+ GVAG V
Sbjct: 558 VFLGAPL-AARHQRWLQARRVVAGRLINGYSSRDWMLRLVYRSKAWSLCGVAGAEPV 613
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A024G2C1_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G2C1_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 6.770e-13 Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query: 19 SCVFFLLLQVFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 243
+C+ + VFL P PAS W+ +RS VAGR+ING+S DW+LAL+YR + W+ AG + +E +ENVDL
Sbjct: 524 NCLGIIENAVFLGTPVPASVEE-WESIRSVVAGRIINGFSKNDWMLALMYRYQGWAFTCAGIAPLEAKYIENVDL 597
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A8J2SF46_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SF46_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 4.390e-12 Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 46 VFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSV-GVAGTSRV--EGCG-----VENVDL 243
V L P A+ R W+ R V+GRLINGYS+RDW+L LVYR+K+WS+ GVAGT+ V E G +ENVDL
Sbjct: 490 VLLGAPVSATSER-WRAARGVVSGRLINGYSTRDWMLRLVYRAKAWSIAGVAGTTPVVPEHAGQDAPMIENVDL 562
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A2P4Y8C6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8C6_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 7.660e-12 Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1
Query: 46 VFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 243
V L P P + W R V+GRLINGYS +DW+L ++YR + WS+ AG + ++ GVENVDL
Sbjct: 124 VLLGSPVPTARED-WANARRVVSGRLINGYSDKDWMLGVMYRYQGWSLNSAGIAPIDIAGVENVDL 188
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A177DRW2_ALTAL (DUF726-domain-containing protein (Fragment) n=1 Tax=Alternaria alternata TaxID=5599 RepID=A0A177DRW2_ALTAL) HSP 1 Score: 68.6 bits (166), Expect = 1.070e-11 Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 46 VFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGC-GVENVDL 243
V + P+PA+ +RW+++RS VAGR++N YS D++L +YRS VGVAG VEG GVENVD+
Sbjct: 175 VLMGTPAPANP-KRWRQIRSVVAGRIVNVYSKEDYVLGFLYRSAKLQVGVAGLQEVEGVHGVENVDV 240
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A4Q4NT33_ALTAL (Uncharacterized protein n=7 Tax=Alternaria sect. Alternaria TaxID=2499237 RepID=A0A4Q4NT33_ALTAL) HSP 1 Score: 68.6 bits (166), Expect = 1.140e-11 Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 46 VFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGC-GVENVDL 243
V + P+PA+ +RW+++RS VAGR++N YS D++L +YRS VGVAG VEG GVENVD+
Sbjct: 555 VLMGTPAPANP-KRWRQIRSVVAGRIVNVYSKEDYVLGFLYRSAKLQVGVAGLQEVEGVHGVENVDV 620
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Match: A0A7S3HSM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSM4_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.500e-11 Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 85 RWKRVRSAVAGRLINGYSSRDWLLALVYRSKSWSVGVAGTSRVEGCGVENVDL 243
+W++ R+ V+GRL+N Y DWLLA YR W + VAG SRV+ GVENVDL
Sbjct: 22 KWQKARAVVSGRLVNCYWGFDWLLAFCYRYLEWGISVAGLSRVQMPGVENVDL 74 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig13031.1851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig13031.1851.1 >prot_E-siliculosus-1a_F_contig13031.1851.1 ID=prot_E-siliculosus-1a_F_contig13031.1851.1|Name=mRNA_E-siliculosus-1a_F_contig13031.1851.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=81bp MHISWISCVFFLLLQVFLAPPSPASHHRRWKRVRSAVAGRLINGYSSRDWback to top mRNA from alignment at E-siliculosus-1a_F_contig13031:1045..1287+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig13031.1851.1 ID=mRNA_E-siliculosus-1a_F_contig13031.1851.1|Name=mRNA_E-siliculosus-1a_F_contig13031.1851.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=243bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13031:1045..1287+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig13031:1045..1287+ >mRNA_E-siliculosus-1a_F_contig13031.1851.1 ID=mRNA_E-siliculosus-1a_F_contig13031.1851.1|Name=mRNA_E-siliculosus-1a_F_contig13031.1851.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=486bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig13031:1045..1287+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |