mRNA_E-siliculosus-1a_F_contig1302.1846.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1302.1846.1 vs. uniprot
Match: D7FTK5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK5_ECTSI) HSP 1 Score: 624 bits (1609), Expect = 3.030e-219 Identity = 314/325 (96.62%), Postives = 323/325 (99.38%), Query Frame = 1
Query: 232 TILSCETGFTSIGLQDGEDKITPIRVLSTLVSVSVVSAWCSWTKIKRLSLFFAHWLSGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISMGITSVTVPLWETVYVLGTGFWIVNSNQGSYDAVVVSIFFLEFMVGICMFIIVAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLREKDMDERGGNARSSNNNCNNSVNSSGLVVSRRHGKSSPRSGGSSINTTNPTTHV 1206
TILSCETGFT+IGLQ+GEDKITPIRVLSTLVSVSVVSAWCSWTK+KRLSLFFAHWLSGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAIS+GITSVTVPLWETVYV+GTGFWIVNS+QGSYDAVVVSIFFLEFMVGICMF+I+AWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLREKDMDERGGNARSSN NCN+S NSSGLVVSRRHGKSSPRSGGSSINTTNPTTHV
Sbjct: 3 TILSCETGFTAIGLQEGEDKITPIRVLSTLVSVSVVSAWCSWTKVKRLSLFFAHWLSGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISIGITSVTVPLWETVYVIGTGFWIVNSDQGSYDAVVVSIFFLEFMVGICMFVILAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLREKDMDERGGNARSSNYNCNDSANSSGLVVSRRHGKSSPRSGGSSINTTNPTTHV 327
BLAST of mRNA_E-siliculosus-1a_F_contig1302.1846.1 vs. uniprot
Match: D7FTK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK4_ECTSI) HSP 1 Score: 360 bits (924), Expect = 1.480e-116 Identity = 177/237 (74.68%), Postives = 209/237 (88.19%), Query Frame = 1
Query: 400 SGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISMGITSVTVPLWETVYVLGTGFWIVNSNQGSYDAVVVSIFFLEFMVGICMFIIVAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLREKDMDERGGNARSSNNNCNNSV 1110
+G++W LC++VEDMMVTVCW +L IK VKF+E SS+M+A+THLAICVNLALIVSSHRTL RVQSVSSP LL+L+LAISMG+T+ TVPLWETV V+GT FWIVNS+QG YDAVVVSIFFLEF+VG+CMF+IVAWLLLFR+KEVKECWRI ARIRYY CLT+LGT +++ IGICSTVFV+G + + RLAIW+WV RYIH+ALDTFVLYGVLREKDMDER GNAR S+ N N++V
Sbjct: 10 TGIIWSLCWLVEDMMVTVCWAGKNLEDLIKTVKFVELASSHMLALTHLAICVNLALIVSSHRTLKRVQSVSSPGLLTLMLAISMGMTAATVPLWETVIVVGTSFWIVNSDQGKYDAVVVSIFFLEFIVGLCMFVIVAWLLLFRLKEVKECWRIHARIRYYLCLTVLGTGISLSIGICSTVFVLGGLKQTRLAIWAWVFRYIHIALDTFVLYGVLREKDMDERVGNARPSDINSNSTV 246
BLAST of mRNA_E-siliculosus-1a_F_contig1302.1846.1 vs. uniprot
Match: D8LNM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM4_ECTSI) HSP 1 Score: 271 bits (693), Expect = 2.480e-82 Identity = 134/243 (55.14%), Postives = 180/243 (74.07%), Query Frame = 1
Query: 238 LSCETGFTSIGLQDGEDKITPIRVLSTLVSVSVVSAWCSWTK-IKRLSLFFAHWLSGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISMGITSVTVPLWETVYVLGTGFWIVNSNQGSYDAVVVSIFFLEFMVGICMFIIVAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDE 963
L C GF +GLQ+GE TPIRV+STL+++SV SAW S K IK+L LFF+HWLSGL+ L F+ E MV+VCW L IK +KF E +SNM+AIT+LAICVNLALIV SHRTL+RV+S S+P L+ + LA+S+G+ +++VP W + V GT FW+ Q ++D +VV+ FF+EF VGICM +IV WL++FR E+K+ W++ ARIRYYF LTL+ T VN+ +GIC T++V+GDM E
Sbjct: 30 LKCNAGFFVVGLQEGEAVCTPIRVISTLITMSVASAWFSRRKSIKKLLLFFSHWLSGLLHQLVFMTEATMVSVCWAGDSLTKLIKTLKFFELAASNMLAITNLAICVNLALIVMSHRTLSRVRSASTPALILVFLALSLGVAAISVPFWTEMVVSGTAFWVQTHEQAAHDWIVVAGFFVEFFVGICMLVIVVWLVIFRRTEIKQSWKMHARIRYYFGLTLIATGVNLALGICGTIYVVGDMKE 272
BLAST of mRNA_E-siliculosus-1a_F_contig1302.1846.1 vs. uniprot
Match: A0A6H5JWL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWL8_9PHAE) HSP 1 Score: 268 bits (684), Expect = 7.050e-81 Identity = 136/256 (53.12%), Postives = 182/256 (71.09%), Query Frame = 1
Query: 400 SGLVWGLCFVVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISMGITSVTVPLWETVYVLGTGFWIVNSNQGSYDAVVVSIFFLEFMVGICMFIIVAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLREKDMDERGGNARSSNNNCNNSVNSSGLVVSRRHGKSSPRSG 1167
SG + L + ED+MV+ C+ ++L+G IK + F+ SSNM+A T+L IC+NLALIVSSHRT+TRV++VSSP +L ++L +S + + TVPLWET VLGT FW NS+ D +++SI+ +EF+VGICM +IV WL +FRM E+KECWR +RIRYYFCLTL GTAVN+G+GIC +V GD EP IWSW+ RYIH++ DT VLYG LRE +DER RSS + + N+SGL R+G+ S + G
Sbjct: 9 SGTLVCLALMTEDVMVSACYAATNLVGLIKTINFVMMTSSNMLAATNLGICINLALIVSSHRTMTRVKTVSSPRVLFIMLLVSASLAAATVPLWETTVVLGTHFWFTNSDPVKNDFIIMSIYIIEFLVGICMLVIVFWLAMFRMTEIKECWRFHSRIRYYFCLTLFGTAVNLGLGICGAAYVFGDRKEPLPQIWSWLFRYIHISFDTLVLYGALREGSIDERAEADRSSQDGHGH--NASGLA---RNGELSSKPG 259
BLAST of mRNA_E-siliculosus-1a_F_contig1302.1846.1 vs. uniprot
Match: D8LNN1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN1_ECTSI) HSP 1 Score: 245 bits (625), Expect = 5.140e-72 Identity = 119/200 (59.50%), Postives = 156/200 (78.00%), Query Frame = 1
Query: 442 MVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISMGITSVTVPLWETVYVLGTGFWIVNSNQGSYDAVVVSIFFLEFMVGICMFIIVAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVL 1041
MV VCW S++ GF+KA+KF+E V+SNM+AIT+LAIC NLAL++ SHRTL RV+S SSP L+ L LA+S+ + P W+T V GTGF + N +Q S D + VS FFLEF+VGICMF+IVAWLLLFR+ EVKECW++ ARIRYYF LTL+GT VN+ +G+C T++V+G ++ L + +W R+IH+ALDTFVLYGVL
Sbjct: 1 MVLVCWAGSNVTGFVKALKFLELVASNMLAITNLAICANLALVIMSHRTLARVKSFSSPSLVFLSLAVSIAVAVAAAPFWQTTVVSGTGFAVRNEDQRSGDWLAVSRFFLEFLVGICMFVIVAWLLLFRINEVKECWKVHARIRYYFGLTLIGTTVNLALGVCGTIYVVGGREKSLLIVLTWTFRHIHIALDTFVLYGVL 200
BLAST of mRNA_E-siliculosus-1a_F_contig1302.1846.1 vs. uniprot
Match: A0A6H5K8K6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K6_9PHAE) HSP 1 Score: 236 bits (603), Expect = 5.050e-69 Identity = 128/255 (50.20%), Postives = 175/255 (68.63%), Query Frame = 1
Query: 427 VVEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISMGITSVTVPLWETVYVLGTGFWIVNSNQGSYDAVVVSIFFLEFMVGICMFIIVAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLREKDMDERGGNARSSNNNCNNSVN-SSGLVVSRRHGKSSPRSGGSSINTT 1188
+ + M++VCW L GFIKA+K++E SSNM+AIT+LAIC+NLAL+V+SHRTL+RV SVS+P L+ L LAIS+ + +VP W V GT FW+ N+++ D ++VSI LEF+VGICMFIIV+WL+ FRM+ +KECW++ ARIRYYF LT++GTAVN+ +GI +V L +W RY HVALDT VLYGVL + MDE GG+A S++ + + SSGL H +SG S+ ++T
Sbjct: 3 MTQGTMISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVNSVSTPALVLLFLAISVVAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFIIVSWLMAFRMRAIKECWKLHARIRYYFVLTVIGTAVNLALGISGFSYVFRANAGEYLLSLTWAFRYAHVALDTIVLYGVLGTRHMDEGGGSAASTSGTSSGRLPASSGLPRPSNHRGMKKQSGLSNTSST 257
BLAST of mRNA_E-siliculosus-1a_F_contig1302.1846.1 vs. uniprot
Match: D8LNP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNP0_ECTSI) HSP 1 Score: 221 bits (562), Expect = 1.220e-63 Identity = 109/208 (52.40%), Postives = 151/208 (72.60%), Query Frame = 1
Query: 442 MVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISMGITSVTVPLWETVYVLGTGFWIVNSNQGSYDAVVVSIFFLEFMVGICMFIIVAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLREKDMDER 1065
M++VCW +L FIK +KF+E +SNM+AIT+LAICVNL+LIV S R + V+S+S+ L+ L LA+S G+ ++ VP W + GTGFW + N+ ++ V++S F +EF+VGICMF+IV+WLLLFRM E+KECW + A +RYYF LTLLGT N+ +G+C T++VI DM P L I+SW R + +ALDT VL+ VL K +DER
Sbjct: 1 MISVCWAGENLATFIKTLKFLELFASNMLAITNLAICVNLSLIVMSRRPQSHVKSISTHKLVLLFLALSAGLAAIAVPFWGLTVLSGTGFWELGENKRDHEFVMISTFMVEFLVGICMFVIVSWLLLFRMTEIKECWMMHACLRYYFGLTLLGTVGNLTLGVCGTIYVISDMAWPLLMIFSWGFRQVRIALDTIVLHSVLATKSVDER 208
BLAST of mRNA_E-siliculosus-1a_F_contig1302.1846.1 vs. uniprot
Match: D8LNN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN7_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.940e-56 Identity = 100/178 (56.18%), Postives = 125/178 (70.22%), Query Frame = 1
Query: 634 LLAISMGITSVTVPLWETVYVLGTGFWIVNSNQGSYDAVVVSIFFLEFMVGICMFIIVAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDEPRLAIWSWVSRYIHVALDTFVLYGVLREKDMDERGGNARSSNNNCNNSVNSSGLVVSRRHGKSSPRSG 1167
+L +S + TVPLWET VLGT FW N + YD V++SI+ EF+VGICM +IV+WL +FRMKE+KECW+I RIRYYFCLTLLGTAVN+G+GIC FV GD +P L IWSW+ RYI ++ DT VLYGVLRE +DER RSS + + N+SGL +R+ S RSG
Sbjct: 1 MLLVSASLAVATVPLWETTVVLGTAFWFTNPDPAKYDFVIMSIYIFEFIVGICMLVIVSWLAMFRMKEMKECWKIHPRIRYYFCLTLLGTAVNLGLGICGAAFVKGDRKQPLLQIWSWLFRYIQISFDTLVLYGVLREGSIDERAEEDRSSQDGHGH--NASGLAGNRKLSSKSGRSG 176
BLAST of mRNA_E-siliculosus-1a_F_contig1302.1846.1 vs. uniprot
Match: D8LNN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN2_ECTSI) HSP 1 Score: 196 bits (497), Expect = 3.760e-55 Identity = 97/171 (56.73%), Postives = 131/171 (76.61%), Query Frame = 1
Query: 442 MVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTRVQSVSSPWLLSLLLAISMGITSVTVPLWETVYVLGTGFWIVNSNQGSYDAVVVSIFFLEFMVGICMFIIVAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGD 954
M++VCW L GFIKA+K++E SSNM+AIT+LAIC+NLAL+V+SHRTL+RV+SVS+P L+ L LAIS+ + +VP W V GT FW+ N+++ D ++VSI LEF+VGICMF+IV+WL+ FRM+ +KECW+I ARIRYYF LTL+ TAVN+ +GI +V D
Sbjct: 1 MISVCWVGERLEGFIKALKYLEQTSSNMLAITNLAICINLALVVNSHRTLSRVKSVSTPALVLLFLAISVIAAAASVPFWSITVVSGTAFWVTNADKAKADWIIVSIIILEFVVGICMFVIVSWLMAFRMQAIKECWKIHARIRYYFVLTLIATAVNLALGISGLSYVFRD 171
BLAST of mRNA_E-siliculosus-1a_F_contig1302.1846.1 vs. uniprot
Match: D8LNM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM5_ECTSI) HSP 1 Score: 184 bits (467), Expect = 8.590e-51 Identity = 94/179 (52.51%), Postives = 128/179 (71.51%), Query Frame = 1
Query: 430 VEDMMVTVCWTESDLIGFIKAVKFIEFVSSNMMAITHLAICVNLALIVSSHRTLTR-VQSVSSPWLLSLLLAISMGITSVTVPLWETVYVLGTGFWIVNSNQGSYDAVVVSIFFLEFMVGICMFIIVAWLLLFRMKEVKECWRIDARIRYYFCLTLLGTAVNIGIGICSTVFVIGDMDE 963
++ M++VCWT ++LI IK KF+E S NM+A+T+LAIC+NLAL+V SH V S+SSP L+ + L IS+G + P WE + + GTGF+ NQ D + +S F+LEF VGICMF+IVAWLLLFRM E+KECW++ ARIRYYF LTL+ T VN+ +GIC +++IGD +E
Sbjct: 1 MQATMISVCWTGANLIKLIKTFKFLELASVNMLAMTNLAICMNLALVVMSHGDQQPGVNSLSSPLLIVVSLVISIGAAAAAAPFWEFIILSGTGFFPETENQRGSDWITISRFYLEFFVGICMFVIVAWLLLFRMTEIKECWKMHARIRYYFGLTLIATGVNLILGICGVIYLIGDREE 179 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1302.1846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1302.1846.1 >prot_E-siliculosus-1a_F_contig1302.1846.1 ID=prot_E-siliculosus-1a_F_contig1302.1846.1|Name=mRNA_E-siliculosus-1a_F_contig1302.1846.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=329bp MSTTILSCETGFTSIGLQDGEDKITPIRVLSTLVSVSVVSAWCSWTKIKRback to top mRNA from alignment at E-siliculosus-1a_F_contig1302:13869..21132- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1302.1846.1 ID=mRNA_E-siliculosus-1a_F_contig1302.1846.1|Name=mRNA_E-siliculosus-1a_F_contig1302.1846.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7264bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1302:13869..21132- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1302:13869..21132- >mRNA_E-siliculosus-1a_F_contig1302.1846.1 ID=mRNA_E-siliculosus-1a_F_contig1302.1846.1|Name=mRNA_E-siliculosus-1a_F_contig1302.1846.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1974bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1302:13869..21132- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |