mRNA_E-siliculosus-1a_F_contig130.1835.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig130.1835.1
Unique NamemRNA_E-siliculosus-1a_F_contig130.1835.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig130.1835.1 vs. uniprot
Match: D7G8Q3_ECTSI (Mitochondrial ribosomal protein L46 isoform 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q3_ECTSI)

HSP 1 Score: 608 bits (1569), Expect = 1.370e-217
Identity = 302/308 (98.05%), Postives = 307/308 (99.68%), Query Frame = 1 
Query:   79 MFARRCTMLSSSAVRRVKLRPLAVLLAPSCRELSSSNLTKKQQIEGFTIKDRRPPRPRVAKQRRKQYLAERKAAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTANEEQGGQHEKFGDKVFINRVQLICGQPTLVKREAAEHLWVTKHEIGEYLGESMGVYLKHLI 1002
            MFARRCTMLSSSAVRRVKLRPLAVLLAP+CRELSSSNLTKKQQIEGFTIKDRRPPRPRVAKQ+RKQYLAERK AFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTA+EEQGGQHEKFGDKVFINRVQLICGQPT+VKR+AAEHLWVTKHEIGEYLGESMGVYLKHLI
Sbjct:    1 MFARRCTMLSSSAVRRVKLRPLAVLLAPNCRELSSSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERKDAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTADEEQGGQHEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYLGESMGVYLKHLI 308
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BLAST of mRNA_E-siliculosus-1a_F_contig130.1835.1 vs. uniprot
Match: W7TRZ1_9STRA (Mitochondrial ribosomal protein l46 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRZ1_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.590e-30
Identity = 84/246 (34.15%), Postives = 126/246 (51.22%), Query Frame = 1 
Query:  277 YLAERKAAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDD-EKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVK-PRSGDEWRLPESAWEPGE--------TIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTANEEQGGQ---HEKFGDKVFINRVQLICGQPTLVKREAAEHLWVTKHEIGEYLGES 975
            YL  R A     +  A    L W I +A I+ER P+I++E  DW+  + ++Q + A +G  FP E+       E   + ++VL + P  LAPR T AD  NDRTTL+RAL ERL L+++ P +   W LP +  E G         ++R+T E T ++ L           D  + +   N P G  WR  +E   G+    + +GDKVF  R Q + G+  +V     E +WVT+ E+GEYL ++
Sbjct:  102 YLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFL----------GDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 337
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BLAST of mRNA_E-siliculosus-1a_F_contig130.1835.1 vs. uniprot
Match: A0A2P6VD62_9CHLO (Serine threonine-kinase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VD62_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 1.400e-23
Identity = 79/206 (38.35%), Postives = 110/206 (53.40%), Query Frame = 1 
Query:  358 ALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTANEEQGGQHEKFGDK--VFINRVQLICGQPTLVKREA-AEHLWVTKHEIGEYL 966
            A++ ERLPV+V E  +W+R++++ Q   A    K+  E+  ++ D K   M++    S  P APR T AD +NDR +L R LD+RL ++V+ + G  W LP+     GET+RQTAER     +   A R          +FVGN PAG             H   GD   +F +R QLI G P L      +EH+WVTK E+GEYL
Sbjct:   52 AVVFERLPVVVPEDPEWEREYFEWQDGLA---GKYRKELPREFTDLKDSEMKEDAGASYEP-APRVTAADHANDRRSLKRRLDQRLFMLVRQKGG--WTLPQQENAEGETMRQTAERALADAVELEAVRP---------YFVGNAPAG-------------HAPLGDAGTLFFHRCQLIQGVPALRGGSGYSEHVWVTKEELGEYL 229
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BLAST of mRNA_E-siliculosus-1a_F_contig130.1835.1 vs. uniprot
Match: A0A3Q7SNB8_VULVU (39S ribosomal protein L46, mitochondrial n=6 Tax=Canidae TaxID=9608 RepID=A0A3Q7SNB8_VULVU)

HSP 1 Score: 106 bits (265), Expect = 1.910e-22
Identity = 76/239 (31.80%), Postives = 119/239 (49.79%), Query Frame = 1 
Query:  325 TSLGLDWGIRSALILERLPVIVEEYTDWQRD----FWDLQTKQAHYG-------------AKFPAEMGFKYDDEKSLTM----EQVLEQSPVPLAP--RRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTANEEQGGQHEKFGDKVFINRVQLICGQPTLVKREAAEHLWVTKHEIGEYL 966
            +S G  W +  AL L+R P++ +  T  Q +    F  ++ +++ Y              AK  A++  + DDE+ + +    E V EQ  +   P  R T AD+ NDRT+L R LD  LVL+VK + GD+  W LP++ W+PGET+R TAERT   L           ++  +  F+GN P G + +    +        G KVF  +  L+ G  +   ++   H+WV K E+G+YL
Sbjct:   39 SSSGSPWRLLGALCLQRPPLVSKPLTPLQEEMAALFQQIEVERSRYSDHELRALDEARRLAKKKADLNDEEDDEQDILLVQDLEDVWEQKFLQFKPGARVTEADKKNDRTSLQRKLDRNLVLLVKEKLGDQDVWMLPQAEWQPGETLRGTAERTLATL----------SENNLEAKFLGNAPCGHY-KFKFPQALRTESSLGAKVFFFKALLLTGDFSRTSKKD-HHVWVCKEELGDYL 265
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BLAST of mRNA_E-siliculosus-1a_F_contig130.1835.1 vs. uniprot
Match: A0A4D9D2E5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.230e-22
Identity = 68/209 (32.54%), Postives = 107/209 (51.20%), Query Frame = 1 
Query:  388 VEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFK-YDDEKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVK-PRSGDEWRLPESAWEPGE--------TIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTANEEQGGQ---HEKFGDKVFINRVQLICGQPTLVKREAAEHLWVTKHEIGEYLGES 975
            ++E  DW+  + ++Q + A +G  FP E+    +  E   + + VL + P  LAPR T AD  NDRTTL+RAL ERL L+++ P +   W LP +  E G         ++R T E T ++ +           +  + +   N P G  WR  +E   G+    + +GDKVF  R Q + G+  +V     E +WVT+ E+GEYL ++
Sbjct:    1 MKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGHAAELDRSDDDVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRNTHEATVRRFM----------GEKFEAYVPSNAPVGVHWRVPSEPSTGKTGGEQAYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 199
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BLAST of mRNA_E-siliculosus-1a_F_contig130.1835.1 vs. uniprot
Match: V4A4N9_LOTGI (MRP-L46 domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4A4N9_LOTGI)

HSP 1 Score: 105 bits (261), Expect = 2.700e-22
Identity = 76/237 (32.07%), Postives = 115/237 (48.52%), Query Frame = 1 
Query:  343 WGIRSALILERLPVIVEEYTDWQRDFWDLQTK-QAHYGAKFPAEMGFKYDDE--------KSLTMEQV---------------LEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSG--DEWRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTANEEQGGQHEKFGDKVFINRVQLICGQPTLVKREAAEHLWVTKHEIGEYLGES 975
            W +  A+ LER P+I +E TD+++   D  +K +         E+ F+ DD+        + LT+E++                E      APRRT ADE +DR + +R LDE+L+LIVK R G  D W LP S W  GE++RQTA R              Q  D  +  F+GN P G+F     ++    +E  G KVF  +     G   L + + +++LWVTK E+ +Y+ + 
Sbjct:    1 WDLFGAVCLERRPIITKEMTDYEKKMSDFLSKLELENSLLSDHELRFR-DDKLHAKRIKLEELTVEELENPREMAVEAEDKWKTELEEFTFAPRRTVADEKDDRKSTERKLDEKLILIVKQRLGKTDVWALPHSQWLDGESMRQTANRALD----------SQCGDQIKSCFIGNAPCGFFKYKYPKKV--VNESIGRKVFFFKALYENGPVKLKEGDVSDYLWVTKSELSDYMNKQ 224
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BLAST of mRNA_E-siliculosus-1a_F_contig130.1835.1 vs. uniprot
Match: UPI00032910DB (39S ribosomal protein L46, mitochondrial n=1 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI00032910DB)

HSP 1 Score: 102 bits (255), Expect = 4.440e-21
Identity = 78/253 (30.83%), Postives = 124/253 (49.01%), Query Frame = 1 
Query:  280 LAERKAAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRD----FWDLQTKQAHYG-------------AKFPAEMGFKYDDEKSLT---MEQVLEQSPVPLAP--RRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTANEEQGGQHEKFGDKVFINRVQLICGQPTLVKREAAEHLWVTKHEIGEYL 966
            L  R  AF A     +S G  W +  AL L+R P++ +  T  Q D       ++ +++ Y              A+  A++    D+++ L    +E + EQ  +   P  R T AD  NDRT+L R LD  LVL+VK + GD+  W LP++ W+PGET+R TAERT   L           ++  +  F+GN P G + +    +   +    G K+F  +  L+ G  T  +++   H+WV+K E+G+YL
Sbjct:   27 LGSRSLAFAAA---PSSSGSPWRLWGALCLQRTPLVSKPLTPLQEDVAALLQQIEVEKSLYSDHELRALDEAQRLARKKADLYDDSDEQEVLLVQDLEDMWEQKYLQFEPGARITEADAKNDRTSLHRKLDRNLVLLVKEKLGDQDVWVLPQAEWQPGETLRGTAERTLATL----------SENNMEAKFLGNAPCGHY-KFKFPQSMRKDNSLGAKIFFFKALLLTGDFTQARKKG-HHVWVSKEELGDYL 264
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BLAST of mRNA_E-siliculosus-1a_F_contig130.1835.1 vs. uniprot
Match: A0A384BTS8_URSMA (39S ribosomal protein L46, mitochondrial n=25 Tax=Caniformia TaxID=379584 RepID=A0A384BTS8_URSMA)

HSP 1 Score: 102 bits (255), Expect = 4.520e-21
Identity = 75/239 (31.38%), Postives = 119/239 (49.79%), Query Frame = 1 
Query:  325 TSLGLDWGIRSALILERLPVIVEEYTDWQRDF----WDLQTKQAHYG-------------AKFPAEMGFKYDDEKSLTM----EQVLEQSPVPLAP--RRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTANEEQGGQHEKFGDKVFINRVQLICGQPTLVKREAAEHLWVTKHEIGEYL 966
            +S G  W +  AL L+R P++ +  T  Q +       ++ +++ Y              AK  A++  + +DE+++ +    E V EQ  +   P  R T ADE NDRT+L R LD  LVL+VK + GD+  W LP++ W+PGET+R TAERT   L           ++  +  F+GN P G + +    +        G KVF  +  L+ G  +   ++   H+WV K E+G+YL
Sbjct:   39 SSSGSPWRLLGALCLQRPPLVSKALTPLQEEMAALLQQIEVERSMYSDHELRALDEAQRLAKKKADLYDEEEDEQNILLVQDLEDVWEQKFLQFKPGARITEADEKNDRTSLHRKLDRNLVLLVKEKLGDQDVWMLPQTEWQPGETLRGTAERTLATL----------SENNLEAKFLGNAPCGHY-KFKFPQAMRTESSLGAKVFFFKALLLTGDFSQTGKKG-HHVWVCKEELGDYL 265
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BLAST of mRNA_E-siliculosus-1a_F_contig130.1835.1 vs. uniprot
Match: F7GBZ6_CALJA (39S ribosomal protein L46, mitochondrial n=8 Tax=Simiiformes TaxID=314293 RepID=F7GBZ6_CALJA)

HSP 1 Score: 101 bits (251), Expect = 1.540e-20
Identity = 73/238 (30.67%), Postives = 114/238 (47.90%), Query Frame = 1 
Query:  325 TSLGLDWGIRSALILERLPVIVEEYTDWQRD--------------FWDLQTKQAHYGAKFPAEMGFKYD--DEKSLTMEQVLEQS------PVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTANEEQGGQHEKFGDKVFINRVQLICGQPTLVKREAAEHLWVTKHEIGEYL 966
            +S G  W +  AL L+R P++ + +T  Q +              + D + +      +   +    YD  DE+ + + Q LE           L  R T ADE NDRT+L+R LD  LVL+V+ + GDE  W LP++ W+PGET+R TAERT   L           ++  +  F+GN P G + +    +        G KVF  +  L+ G  +   ++  +H+WVTK E+ +YL
Sbjct:   38 SSSGSPWRLLGALCLQRPPLVSKPFTPLQEEMASLLQQIEIERSLYSDHELRALEESKRLEKKKADLYDEEDEQDILLVQDLEDMWEQRFVQFKLGARVTEADEKNDRTSLNRKLDRNLVLLVREKLGDEDVWMLPQAEWQPGETLRGTAERTLVTL----------SENNMEAKFLGNAPCGHY-KFKFPQAMRTESNLGAKVFFFKALLLTGDFSEAGKKG-QHVWVTKDELSDYL 263
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig130.1835.1 vs. uniprot
Match: F1SRT0_PIG (39S ribosomal protein L46, mitochondrial n=4 Tax=Suina TaxID=35497 RepID=F1SRT0_PIG)

HSP 1 Score: 100 bits (250), Expect = 2.140e-20
Identity = 71/233 (30.47%), Postives = 116/233 (49.79%), Query Frame = 1 
Query:  343 WGIRSALILERLPVIVEEYTDWQRDFWDLQTK-----------------QAHYGAKFPAEMGFKYDDEKSLTMEQVLEQS------PVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDE--WRLPESAWEPGETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTANEEQGGQHEKFGDKVFINRVQLICGQPTLVKREAAEHLWVTKHEIGEYL 966
            W +  AL L+R P++ +  T  Q +  DL  +                 +A   AK  +++ ++ +DE+++ + Q LE           L  R T AD+ +DRT+L R LD  L+L+V+ + GD+  W LP+S W+PGET+RQTAERT   L           ++  +  F+GN P G + +    +        G KVF  +  L+ G  +   ++   H+WV+K E+G+YL
Sbjct:   45 WRLLGALCLQRPPLVTKPLTPLQEEMADLLQQIEIERSLYSDHELRALDEAQQLAKKKSDL-YEEEDEQNILLAQDLEDMWEQKFLHFKLGARLTEADKKDDRTSLHRKLDRNLILLVREKLGDQDIWMLPQSDWQPGETLRQTAERTLATL----------SENNMEAKFLGNAPCGHY-KFKFPQAMRTETSLGAKVFFFKALLLTGDFSQAGKKG-HHVWVSKEELGDYL 264
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig130.1835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Q3_ECTSI1.370e-21798.05Mitochondrial ribosomal protein L46 isoform 2 n=2 ... [more]
W7TRZ1_9STRA6.590e-3034.15Mitochondrial ribosomal protein l46 n=2 Tax=Nannoc... [more]
A0A2P6VD62_9CHLO1.400e-2338.35Serine threonine-kinase n=1 Tax=Micractinium condu... [more]
A0A3Q7SNB8_VULVU1.910e-2231.8039S ribosomal protein L46, mitochondrial n=6 Tax=C... [more]
A0A4D9D2E5_9STRA2.230e-2232.54Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
V4A4N9_LOTGI2.700e-2232.07MRP-L46 domain-containing protein (Fragment) n=1 T... [more]
UPI00032910DB4.440e-2130.8339S ribosomal protein L46, mitochondrial n=1 Tax=D... [more]
A0A384BTS8_URSMA4.520e-2131.3839S ribosomal protein L46, mitochondrial n=25 Tax=... [more]
F7GBZ6_CALJA1.540e-2030.6739S ribosomal protein L46, mitochondrial n=8 Tax=S... [more]
F1SRT0_PIG2.140e-2030.4739S ribosomal protein L46, mitochondrial n=4 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig130contigE-siliculosus-1a_F_contig130:70880..76029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size927
Model size1340
Exons5
Ec32 orthologEc-22_002600.1
Ec32 ortholog description39S ribosomal protein L46, mitochondrial
Hectar predicted targeting categorymitochondrion
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko03012,ko03029
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EC2.7.11.1,4.2.1.18
EggNOG OGsKOG4548@1,KOG4548@2759
EggNOG free text desc.mitochondrial translation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0030054,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
KEGG ModuleM00036
KEGG Pathwayko00280,ko01100,ko04137,ko04140,ko04141,ko04210,ko04214,ko04932,ko05010,ko05160,ko05162,ko05164,ko05168,ko05169,map00280,map01100,map04137,map04140,map04141,map04210,map04214,map04932,map05010,map05160,map05162,map05164,map05168,map05169
KEGG ReactionR02085
KEGG koko:K02519,ko:K05607,ko:K08860,ko:K17427
KEGG rclassRC02416
Preferred nameMRPL46
Seed eggNOG ortholog2880.D7G8Q3
Seed ortholog evalue2.9e-173
Seed ortholog score614.4
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927824.52392-UTR-E-siliculosus-1a_F_contig130:70879..712141622927824.52392-UTR-E-siliculosus-1a_F_contig130:70879..71214Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig130 70880..71214 -
1696318695.750387-UTR-E-siliculosus-1a_F_contig130:70879..712141696318695.750387-UTR-E-siliculosus-1a_F_contig130:70879..71214Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig130 70880..71214 -
1622927824.5961301-UTR-E-siliculosus-1a_F_contig130:75951..760291622927824.5961301-UTR-E-siliculosus-1a_F_contig130:75951..76029Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig130 75952..76029 -
1696318695.809702-UTR-E-siliculosus-1a_F_contig130:75951..760291696318695.809702-UTR-E-siliculosus-1a_F_contig130:75951..76029Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig130 75952..76029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927824.5356383-CDS-E-siliculosus-1a_F_contig130:71214..713581622927824.5356383-CDS-E-siliculosus-1a_F_contig130:71214..71358Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig130 71215..71358 -
1696318695.7633243-CDS-E-siliculosus-1a_F_contig130:71214..713581696318695.7633243-CDS-E-siliculosus-1a_F_contig130:71214..71358Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig130 71215..71358 -
1622927824.5467253-CDS-E-siliculosus-1a_F_contig130:71808..719941622927824.5467253-CDS-E-siliculosus-1a_F_contig130:71808..71994Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig130 71809..71994 -
1696318695.7729113-CDS-E-siliculosus-1a_F_contig130:71808..719941696318695.7729113-CDS-E-siliculosus-1a_F_contig130:71808..71994Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig130 71809..71994 -
1622927824.5590944-CDS-E-siliculosus-1a_F_contig130:72776..728971622927824.5590944-CDS-E-siliculosus-1a_F_contig130:72776..72897Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig130 72777..72897 -
1696318695.7820027-CDS-E-siliculosus-1a_F_contig130:72776..728971696318695.7820027-CDS-E-siliculosus-1a_F_contig130:72776..72897Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig130 72777..72897 -
1622927824.5719357-CDS-E-siliculosus-1a_F_contig130:75239..754311622927824.5719357-CDS-E-siliculosus-1a_F_contig130:75239..75431Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig130 75240..75431 -
1696318695.7930355-CDS-E-siliculosus-1a_F_contig130:75239..754311696318695.7930355-CDS-E-siliculosus-1a_F_contig130:75239..75431Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig130 75240..75431 -
1622927824.5852833-CDS-E-siliculosus-1a_F_contig130:75667..759511622927824.5852833-CDS-E-siliculosus-1a_F_contig130:75667..75951Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig130 75668..75951 -
1696318695.8019059-CDS-E-siliculosus-1a_F_contig130:75667..759511696318695.8019059-CDS-E-siliculosus-1a_F_contig130:75667..75951Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig130 75668..75951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig130.1835.1prot_E-siliculosus-1a_F_contig130.1835.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig130 71215..75951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig130.1835.1

>prot_E-siliculosus-1a_F_contig130.1835.1 ID=prot_E-siliculosus-1a_F_contig130.1835.1|Name=mRNA_E-siliculosus-1a_F_contig130.1835.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=309bp
MFARRCTMLSSSAVRRVKLRPLAVLLAPSCRELSSSNLTKKQQIEGFTIK
DRRPPRPRVAKQRRKQYLAERKAAFEAEQEKATSLGLDWGIRSALILERL
PVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDDEKSLTMEQVLEQ
SPVPLAPRRTPADESNDRTTLDRALDERLVLIVKPRSGDEWRLPESAWEP
GETIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTANEE
QGGQHEKFGDKVFINRVQLICGQPTLVKREAAEHLWVTKHEIGEYLGESM
GVYLKHLI*
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mRNA from alignment at E-siliculosus-1a_F_contig130:70880..76029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig130.1835.1 ID=mRNA_E-siliculosus-1a_F_contig130.1835.1|Name=mRNA_E-siliculosus-1a_F_contig130.1835.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5150bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig130:70880..76029- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGACCGCAGCTAAGCAGAGCCTAGAAGTAGAGCACGGCCGTAGCGCCTT
GGCCCAGCTGTTGCTCCTGCAAGAAATCATGTTCGCTAGACGATGTACGA
TGCTTTCATCCTCTGCCGTACGAAGAGTTAAGCTGCGGCCGCTGGCGGTG
CTACTAGCACCTAGTTGCCGAGAACTGAGCTCGTCGAACTTGACGAAGAA
GCAACAGATCGAGGGGTTCACGATCAAGGACCGGAGGCCTCCACGACCTC
GTGTAGCAAAGCAAAGGCGGAAGCAGTACCTGGCAGAGCGAAAAGCTGCT
TTCGAGGCAGAGCAGGAAAAAGCGACAAGTCTTGGTCTGGATTGGGGTAT
CAGGAGTGCCCTGTGAGTTCACTACTATGCCTCACATACCAAGTCTACAG
GAGTAGTTGTTATTATCCCAAACGTTAGGTGCGCACGATGGCAAAGCGGC
CGCAACAGCGTACTGCTGTAGAGGAATGCATGTTAATGTAGGTGCGCTGT
GGTATAAGGTACAGCACCACACCTCGTAACACCCTGTCGCCAGAAATGCA
CGCTGTCCTGCTCTCACACACGTTTGTGTGTCATGCCGGTTTATGTAGGA
TTCTGGAGCGCCTCCCCGTGATCGTAGAGGAGTACACTGATTGGCAGCGT
GACTTCTGGGACCTTCAGACCAAGCAAGCTCACTACGGCGCGAAATTCCC
CGCCGAAATGGGCTTCAAGTATGATGACGAGAAGTCTCTGACTATGGAGC
AGGTCCTGGAGCAAAGCCCTGTCCCTCTCGCGCCTCGACGGTAAGAGGGC
CAGCAAGCACGCATGCCTTGGATTCGAAGATCCAAACTCATGCTGTTGCT
GGACTTTGGATTTGAACCAGCTATTTCGGCGGTGGCGGATGGTGACGGTT
GTTGGCACACTCGAACTTCGAGTTTACTTGGTGTACATTCACAACAGCAG
TGCCCTGAAAAAGCAGTAGCCTTCGCAGAGTGTTTCGACTAAGTAAGGCC
GTGCTTTAACGAAGCGCCGAATCAAACCTAATAAAAATCAATTTCGAGCT
CTGATTGGTCGAATCACTCAGACCTCCTGACGACGCCCTTTGATTTTCTG
GAAGTTCCTCTCTCTAAGAAGAAGTCCCCGAGGGGATTTTTTTTTATCAA
AATCAAAATCAAAGAGGAGTTCAAGACTTCGAAAGCTTCGAGCACTTGCC
GCGAGGCCGCTGCAAAGTAAGTGCACGGCACGACCTGCTGTACACTGCTC
ATTAGAGCGGCTATCGGCACCCTACAACCACCGAGACCATGGCCATATTT
GTAGCCAGAAGACTCTGCTCGCCGGCAAGCCCAACACCGGGCCGGCTCGT
TGGGTGCTCGAGGAGAAAATGTCGATAGTGACAAGCGGTGAACGGACTGG
CGATCAAAACAGGGCTGTGCGGCTTTTTCAGGCTGTTCCGTGCGGGAGAG
GGTAGTTGCAACCTTTTTTCTCCACACTCACGATACGCCAAACCATCTAA
CCTTGTACGAAGAAGATGGTGGGTAGAGCTACCTCCCGCCACGTGACATT
GCTAATGCTGTTGCTTCCTCCTTCGAAAAGTCATCGCTGGAAAACTAAAC
TGTGAGCAGACAGTCGGCGCGAACTTGAACCAATCGCACTCTGACGTGGA
TATTTGTGGATATTTTAGGGTCAACCAAAACTCTTGTCCCGATACGCACG
ATACCCCACGGCGGTAGCTCCCGACGAGTGGCATTGCTGTTGCTGTTGCT
TCCTCCTTCGAAAAGTTGTCGGTGGATAACCAAACCCGTGGCAGTGTAAA
TCACCGAACTTGGACGTGACCGCTCGCTACCGTTGGCATTTTGTCTTCAA
TACAACAATTTTTTCCCGGCGCATTCGGCACCTCACGGCGCCAAACCTTG
GCATTGCCCAACAGCCCATGGTACCAGCTCCTTCCAGATACCGTTCTTGA
GGCAACCCGTTCTTTATGTAGCGAGATATTGGCTCACACGTTAACAGAAG
AGCACAAAACCTACCCTAGAAAATCACCGCTTCGCTGCTGGCTCTTCCCC
TGGCCCCAGGTCTTTTTGAATTTCGCCCAATCTGTCTCCTATCCATGTTA
ACATGGTTGACCCCCTTTTTTCAGTTTTCCACGATAGCGCATTTTGGTTT
TGATTTTCGGCCCATTTCGATTTTGATTTTCGATGCTTCGTTAATACACG
GCCTAAACATGTTGGATAAAGCATGCAAATTGGGGATAAGGTGGGTTACG
GCTTTGGTCTGCGTACCCCCTTCCTGTTCTATTCCCTCATACTACACACC
ACTGGGGTTCATTGAGCTAGAGCTGCATGAACGGCTTAACACTGGCATCT
TCGTCGAGAGCAGCTCTGGAAGTTTTGAGTGTCGCTGCTGCTGCTGCTGC
TCCTTGCTGTGGACGCACACCCTCACATCACGAACGGAAGCAAGGACTCT
GCTGCGCTGCTGAGCTTTGCACGTTGCTTGTTTTGGTGTGGTTGGTTAAC
CCTGTCCTTGTATGGTCTTGCGAGGCGTGGGATGACATTTTATCGAGTTT
GTCGGTTCTGAGTGGTCTTGACTCGTGGCATGTACTGAAATTCATCTTCT
ACGACATGACCACGCTGGCTGTGTTAGACTTTGGGAGCAGCACTTTGTAG
AGGCTCTCTGTGACTAAACCATTCCGTTTCAGGCGACACGTCTCATAGTG
CGGACTGACATTTGAACTTCGATACACGTGTGCCCCGCCGCCTTCTGCAG
GTGTTTGCTGCGAACAAATGTAGTTGGTCGGCTAGGTACGCTTGCTCTCC
TTTCAAATCCCACCAACTGTAGCTAGGGAATTCGTCGAGGTTTTCCGGTA
TTCTTCAGATCAGTCCTCGACGCGTTGGACCAGGCGGGTTTTTGTGTGCA
CCAAATCGCGATATCTACGATGAAATGTTTCTTCAATCCCGTTACTCTGA
GGCGGCCGAGTCCGAAGGCTTTTGTAACATGACGGTTAATCAAAACAAAC
TTGAGCATTTCCGGCAACACTTGCAAGGAGTGCGAGATGCACATCAGCTT
GATATTGCGTGAAGACTCTGGTGACTGAGTCCCTTGGTATTGTGATTCCT
TTGGTGTATAAACGTCTTTTTTTCCTGCTCAGGACTCCTGCTGACGAGTC
GAACGACCGCACGACTTTGGATCGGGCACTTGACGAGCGGCTAGTGTTGA
TCGTCAAGCCTAGAAGTGGGGATGAGTGGCGTCTTCCTGAGAGTGCATGG
GAGGTGAGAGGGTCTGTTGTCTTGTTACAAGTTGTTTATCGGTACCACTG
CTTTGAGTTTTGAGTTAAAATGACCAATCACGTGCTTCGCGTTGTGTTTC
CAAACAATGTCCACCTCCAAATCTGTGTTCTGCACAGCCGCAACGACCTT
TGTTTCCACTCGGTATAATACAATTTTTTGCTCAGCTTTTCATCCACAAG
AAATTGTCGCCCAGTAGTAATTGGCAGACACGTTTGGGCACGTGGTGAAC
AACTGAATTAAACATTCCTAGTTGTCTATCGTTGCGGTAGCTGTTGGCAC
CACACAGCACCAAGAGGCACGAAGCACGGCGTTTTTCTAGTTTTTATTCG
GTAACCGATTACCCTGGCTCTCAGACCTTGTCATTCGTCTGCAGGCAAGT
AGTTGTTCTGAAGTGGCTTACAGACAACTCATCGCACAGCTTTGTTCATC
CGATCGTCGCCTGCAGGCATTTAATTGTTGCGGCAGAGGTTGACAACGAG
TGCATATCCGTCACTCGTCAGTTGTCGTTAGCTGTACGCAGAGTACTGTT
GTTAAGACTTGAGTTTTTTGTTCAGCAGTTCAATTATCTGTAGGAATTTA
CCACCAAACAGTCGTATTGGTAGCGGTGTTTAGTTTTTGTACCACGTGGG
TGTTTGCGGCAGGGCCAAACGGTGTCATGTTTTGGGTGCAGGTCGGAAAA
TGAATGGCAGATGTTGCTGCTGTTGGTATCGTTATCTAAAGACAAACACA
TGCTCATTCTGTGTTATGTTTGTTCCTGCTGCCAGCCGGGAGAGACTATC
CGCCAAACAGCAGAGCGAACTGCACAACAACTGCTGCTGAAATCTGCCAC
TCGGAAGGGTCAGCGGGACGATGTGGCTCAGCTCCACTTCGTTGGAAACT
GTCCGGCTGGCTGGTTCTGGCGCACAGCAAATGAAGAACAAGGGGGACAA
CATGAGAAGTTTGGAGACAAGGTGACTGGCGATCCTGCGTTGTGTGATGC
GACGTCAACGCGCACAGCTAGAACGTCGCCCCCAATCCCGATGTTTGCTG
ATGTATTGTGGGAGAACTGATCTGGGTGTGAATTGTCGACGTTCGTTCGC
CAAGTGACGTACGTTGCATGGAATCACGGCCTTGTTTGAAGAACCCTATG
ATCTTCAGCTTGAGCAGTGTTTGGAAAGGCTATCTTGGCGATAAGGTCGC
GCGCATCCCAGTGGTGTGGGGAGAAAGACGAACAGGCTGCTTGCGTCGAG
AAGTTGTGTCCACTGTAGTGTTTGATTCTGAAATCGGAACAACCGAACAC
CACGAACGTAGGACCAGTTGTTTCCGTCTGGCGAAACACGTTGCTCCGGT
GGCGTCGTCTCGGGTCGGGACCACGAGAAACCAGCAACGTTGACCGTCAT
TTCTGTCGCTGTTGCTCACAGGTGTTCATCAACCGGGTGCAGCTCATTTG
TGGGCAACCAACTTTGGTCAAGAGGGAAGCAGCCGAACACCTTTGGGTGA
CCAAGCATGAGATCGGCGAATACCTCGGGGAGTCCATGGGCGTGTACTTG
AAACATTTGATCTAGAACGTTGAGAGAGGCCAAATTTTGATTATATAATT
GGGACAAGGGACACCGTGTTTCTCAGGACAAGTTAAACAACAATCTACGC
TGAGGGAACGCATGTGTGCGGCGTCCATACAGGCTTTTCGTACAATCGCA
AAATTGGCGCTGACGACCCCTTGATGCATGTGAAGCTTGACTGCTTGTGA
GACGTTGATACCAAGGGTTCGAAATTTCCCAAGGGGATCGACACGAGAGT
TAAAGAGAAAGTTCGAGATGGAGTCCTGTTTTTGTAGTCACATCGACCTT
CCTAATCTCGACCGTGCAAATTCGTTCCTCTACAGATTAGCGTTCGCGTC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig130:70880..76029-

>mRNA_E-siliculosus-1a_F_contig130.1835.1 ID=mRNA_E-siliculosus-1a_F_contig130.1835.1|Name=mRNA_E-siliculosus-1a_F_contig130.1835.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1854bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig130:70880..76029- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTCGCTAGACGATGTACGATGCTTTCATCCTCTGCCGTACGAAGAGT
TAAGCTGCGGCCGCTGGCGGTGCTACTAGCACCTAGTTGCCGAGAACTGA
GCTCGTCGAACTTGACGAAGAAGCAACAGATCGAGGGGTTCACGATCAAG
GACCGGAGGCCTCCACGACCTCGTGTAGCAAAGCAAAGGCGGAAGCAGTA
CCTGGCAGAGCGAAAAGCTGCTTTCGAGGCAGAGCAGGAAAAAGCGACAA
GTCTTGGTCTGGATTGGGGTATCAGGAGTGCCCTATGTTCGCTAGACGAT
GTACGATGCTTTCATCCTCTGCCGTACGAAGAGTTAAGCTGCGGCCGCTG
GCGGTGCTACTAGCACCTAGTTGCCGAGAACTGAGCTCGTCGAACTTGAC
GAAGAAGCAACAGATCGAGGGGTTCACGATCAAGGACCGGAGGCCTCCAC
GACCTCGTGTAGCAAAGCAAAGGCGGAAGCAGTACCTGGCAGAGCGAAAA
GCTGCTTTCGAGGCAGAGCAGGAAAAAGCGACAAGTCTTGGTCTGGATTG
GGGTATCAGGAGTGCCCTGATTCTGGAGCGCCTCCCCGTGATCGTAGAGG
AGTACACTGATTGGCAGCGTGACTTCTGGGACCTTCAGACCAAGCAAGCT
CACTACGGCGCGAAATTCCCCGCCGAAATGGGCTTCAAGTATGATGACGA
GAAGTCTCTGACTATGGAGCAGGTCCTGGAGCAAAGCCCTGTCCCTCTCG
CGCCTCGACGGATTCTGGAGCGCCTCCCCGTGATCGTAGAGGAGTACACT
GATTGGCAGCGTGACTTCTGGGACCTTCAGACCAAGCAAGCTCACTACGG
CGCGAAATTCCCCGCCGAAATGGGCTTCAAGTATGATGACGAGAAGTCTC
TGACTATGGAGCAGGTCCTGGAGCAAAGCCCTGTCCCTCTCGCGCCTCGA
CGGACTCCTGCTGACGAGTCGAACGACCGCACGACTTTGGATCGGGCACT
TGACGAGCGGCTAGTGTTGATCGTCAAGCCTAGAAGTGGGGATGAGTGGC
GTCTTCCTGAGAGTGCATGGGAGGACTCCTGCTGACGAGTCGAACGACCG
CACGACTTTGGATCGGGCACTTGACGAGCGGCTAGTGTTGATCGTCAAGC
CTAGAAGTGGGGATGAGTGGCGTCTTCCTGAGAGTGCATGGGAGCCGGGA
GAGACTATCCGCCAAACAGCAGAGCGAACTGCACAACAACTGCTGCTGAA
ATCTGCCACTCGGAAGGGTCAGCGGGACGATGTGGCTCAGCTCCACTTCG
TTGGAAACTGTCCGGCTGGCTGGTTCTGGCGCACAGCAAATGAAGAACAA
GGGGGACAACATGAGAAGTTTGGAGACAAGCCGGGAGAGACTATCCGCCA
AACAGCAGAGCGAACTGCACAACAACTGCTGCTGAAATCTGCCACTCGGA
AGGGTCAGCGGGACGATGTGGCTCAGCTCCACTTCGTTGGAAACTGTCCG
GCTGGCTGGTTCTGGCGCACAGCAAATGAAGAACAAGGGGGACAACATGA
GAAGTTTGGAGACAAGGTGTTCATCAACCGGGTGCAGCTCATTTGTGGGC
AACCAACTTTGGTCAAGAGGGAAGCAGCCGAACACCTTTGGGTGACCAAG
CATGAGATCGGCGAATACCTCGGGGAGTCCATGGGCGTGTACTTGAAACA
TTTGATCTAGGTGTTCATCAACCGGGTGCAGCTCATTTGTGGGCAACCAA
CTTTGGTCAAGAGGGAAGCAGCCGAACACCTTTGGGTGACCAAGCATGAG
ATCGGCGAATACCTCGGGGAGTCCATGGGCGTGTACTTGAAACATTTGAT
CTAG
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