mRNA_E-siliculosus-1a_F_contig12990.1814.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12990.1814.1
Unique NamemRNA_E-siliculosus-1a_F_contig12990.1814.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12990.1814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12990contigE-siliculosus-1a_F_contig12990:196..1290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size567
Model size1095
Exons1
Hectar predicted targeting categorychloroplast
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927817.7215767-CDS-E-siliculosus-1a_F_contig12990:195..7621622927817.7215767-CDS-E-siliculosus-1a_F_contig12990:195..762Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12990 196..762 +
1696318692.9706535-CDS-E-siliculosus-1a_F_contig12990:195..7621696318692.9706535-CDS-E-siliculosus-1a_F_contig12990:195..762Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12990 196..762 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927817.758997-UTR-E-siliculosus-1a_F_contig12990:762..12901622927817.758997-UTR-E-siliculosus-1a_F_contig12990:762..1290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12990 763..1290 +
1696318692.9783978-UTR-E-siliculosus-1a_F_contig12990:762..12901696318692.9783978-UTR-E-siliculosus-1a_F_contig12990:762..1290Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12990 763..1290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12990.1814.1prot_E-siliculosus-1a_F_contig12990.1814.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12990 196..762 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12990.1814.1

>prot_E-siliculosus-1a_F_contig12990.1814.1 ID=prot_E-siliculosus-1a_F_contig12990.1814.1|Name=mRNA_E-siliculosus-1a_F_contig12990.1814.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=189bp
MNQQDTTCFVHRHPRPTPTRPPCFLPALVLLLFCCSCVCYCNPFKSARLP
AHGTRGAFFLSLLPSPSPPSCTPKINKQHINTTAAAGSSNNNKKRATSTT
TTKTSAEQPDAPSVEHLLLLLLLLPKSKTRKRQLRCAAHQAPAAVTFLAQ
RSNSSPQTKTKTSGGYNCRGTRQNGPQPTRVFGPTNAA*
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mRNA from alignment at E-siliculosus-1a_F_contig12990:196..1290+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12990.1814.1 ID=mRNA_E-siliculosus-1a_F_contig12990.1814.1|Name=mRNA_E-siliculosus-1a_F_contig12990.1814.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1095bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12990:196..1290+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACCAACAGGATACAACATGTTTTGTTCACCGGCACCCTCGCCCCAC
ACCCACTCGCCCACCCTGCTTCTTGCCTGCTTTGGTGCTACTGCTGTTCT
GCTGTTCTTGTGTGTGCTACTGTAACCCATTCAAGTCCGCCCGCCTTCCG
GCACATGGCACTCGGGGGGCATTTTTTCTTTCTCTCCTTCCGTCCCCCTC
TCCCCCGTCGTGTACTCCCAAGATCAACAAGCAGCACATCAACACGACGG
CGGCGGCAGGCAGCAGCAACAACAACAAAAAGCGAGCAACGTCAACAACG
ACAACCAAAACGAGCGCCGAACAGCCCGACGCTCCCTCGGTGGAGCACCT
CCTCCTCCTCCTCCTCCTCCTCCCCAAATCAAAGACACGAAAACGACAGC
TCCGCTGTGCGGCGCATCAAGCTCCTGCTGCAGTAACGTTTCTCGCCCAA
AGGAGCAACAGCAGCCCACAAACAAAAACCAAAACATCCGGTGGATACAA
TTGCCGGGGGACGCGACAAAACGGTCCACAGCCGACCCGGGTGTTCGGGC
CAACAAACGCCGCTTAGCCTCTTGGAACGACAACGACGCGCCCCTTGGCC
CTTATCGAACTTTGCGCTTCCCTTCCCATGACATCGTTCGCCGTCGTCTG
CTCTCTCGTCGCACCTGCGATCGCGTGCGCAACCTCTTCCGCACGGGTAC
TCACTCCCCTTTCCCCTTGACTTATTCTTTTCTCGAGTATGTACAACAAC
CCCCTATTTAATCCCGGTCCCATCAACCCACATCTCGGGCGGCGAGGCTC
TTTCTGATACCGCTGCCGCTGCGGTTCTGCGCGTCGCGCGCCAAGGGAGA
CGATGATATACAATGAACGCCGCCTGTGGGTAAGGCTTTTTTTGACGTGG
CTCAGCCCGTCCGATTCCCGCCATCGCGTCTCGTTCTGCTCCCCTTTCCC
CGCCTGTGGCCCTCCCCTTCCTATCGAGAAAATACAGCAGTGATCCGTCC
GTCGGACCAACAACAGAAAAAAAACTCCATCTCTCAAGCACCCCCACCAC
CAACACAGCACACGCTTCAACCAGGCGCCAAGGGTGCTTACACAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12990:196..1290+

>mRNA_E-siliculosus-1a_F_contig12990.1814.1 ID=mRNA_E-siliculosus-1a_F_contig12990.1814.1|Name=mRNA_E-siliculosus-1a_F_contig12990.1814.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12990:196..1290+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACCAACAGGATACAACATGTTTTGTTCACCGGCACCCTCGCCCCAC
ACCCACTCGCCCACCCTGCTTCTTGCCTGCTTTGGTGCTACTGCTGTTCT
GCTGTTCTTGTGTGTGCTACTGTAACCCATTCAAGTCCGCCCGCCTTCCG
GCACATGGCACTCGGGGGGCATTTTTTCTTTCTCTCCTTCCGTCCCCCTC
TCCCCCGTCGTGTACTCCCAAGATCAACAAGCAGCACATCAACACGACGG
CGGCGGCAGGCAGCAGCAACAACAACAAAAAGCGAGCAACGTCAACAACG
ACAACCAAAACGAGCGCCGAACAGCCCGACGCTCCCTCGGTGGAGCACCT
CCTCCTCCTCCTCCTCCTCCTCCCCAAATCAAAGACACGAAAACGACAGC
TCCGCTGTGCGGCGCATCAAGCTCCTGCTGCAGTAACGTTTCTCGCCCAA
AGGAGCAACAGCAGCCCACAAACAAAAACCAAAACATCCGGTGGATACAA
TTGCCGGGGGACGCGACAAAACGGTCCACAGCCGACCCGGGTGTTCGGGC
CAACAAACGCCGCTTAGATGAACCAACAGGATACAACATGTTTTGTTCAC
CGGCACCCTCGCCCCACACCCACTCGCCCACCCTGCTTCTTGCCTGCTTT
GGTGCTACTGCTGTTCTGCTGTTCTTGTGTGTGCTACTGTAACCCATTCA
AGTCCGCCCGCCTTCCGGCACATGGCACTCGGGGGGCATTTTTTCTTTCT
CTCCTTCCGTCCCCCTCTCCCCCGTCGTGTACTCCCAAGATCAACAAGCA
GCACATCAACACGACGGCGGCGGCAGGCAGCAGCAACAACAACAAAAAGC
GAGCAACGTCAACAACGACAACCAAAACGAGCGCCGAACAGCCCGACGCT
CCCTCGGTGGAGCACCTCCTCCTCCTCCTCCTCCTCCTCCCCAAATCAAA
GACACGAAAACGACAGCTCCGCTGTGCGGCGCATCAAGCTCCTGCTGCAG
TAACGTTTCTCGCCCAAAGGAGCAACAGCAGCCCACAAACAAAAACCAAA
ACATCCGGTGGATACAATTGCCGGGGGACGCGACAAAACGGTCCACAGCC
GACCCGGGTGTTCGGGCCAACAAACGCCGCTTAG
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