mRNA_E-siliculosus-1a_F_contig1297.1802.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1297.1802.1
Unique NamemRNA_E-siliculosus-1a_F_contig1297.1802.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1297.1802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1297contigE-siliculosus-1a_F_contig1297:18797..19275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size387
Model size479
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1297.1802.1prot_E-siliculosus-1a_F_contig1297.1802.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1297 18824..19210 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927815.1760557-UTR-E-siliculosus-1a_F_contig1297:18796..188231622927815.1760557-UTR-E-siliculosus-1a_F_contig1297:18796..18823Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1297 18797..18823 +
1696318691.8606732-UTR-E-siliculosus-1a_F_contig1297:18796..188231696318691.8606732-UTR-E-siliculosus-1a_F_contig1297:18796..18823Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1297 18797..18823 +
1622927815.2804837-UTR-E-siliculosus-1a_F_contig1297:19210..192751622927815.2804837-UTR-E-siliculosus-1a_F_contig1297:19210..19275Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1297 19211..19275 +
1696318691.8885407-UTR-E-siliculosus-1a_F_contig1297:19210..192751696318691.8885407-UTR-E-siliculosus-1a_F_contig1297:19210..19275Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1297 19211..19275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927815.1956084-CDS-E-siliculosus-1a_F_contig1297:18823..192101622927815.1956084-CDS-E-siliculosus-1a_F_contig1297:18823..19210Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1297 18824..19210 +
1696318691.8770185-CDS-E-siliculosus-1a_F_contig1297:18823..192101696318691.8770185-CDS-E-siliculosus-1a_F_contig1297:18823..19210Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1297 18824..19210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1297.1802.1

>prot_E-siliculosus-1a_F_contig1297.1802.1 ID=prot_E-siliculosus-1a_F_contig1297.1802.1|Name=mRNA_E-siliculosus-1a_F_contig1297.1802.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=129bp
MQPTYGIRNVRCAGFVPSCMAWGMAKNTPVACRREYRAAACAKSGQDSHI
ALRASTTPFTAAAPPSFAREPVDGLALVSTSLLSVSAWLPAPLDWLLSTA
TAIPLLFHQNTNHPDIRSRQHMACWMPG*
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mRNA from alignment at E-siliculosus-1a_F_contig1297:18797..19275+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1297.1802.1 ID=mRNA_E-siliculosus-1a_F_contig1297.1802.1|Name=mRNA_E-siliculosus-1a_F_contig1297.1802.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=479bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1297:18797..19275+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCCTGAGGGATGGTGAATCTTATAAGATGCAACCTACATACGGTATACG
AAACGTTCGTTGTGCAGGCTTCGTACCGTCATGCATGGCGTGGGGCATGG
CGAAAAACACACCCGTGGCGTGTCGGCGGGAATACCGCGCTGCGGCATGC
GCAAAGAGCGGCCAAGACTCACACATAGCATTGCGCGCCAGTACAACGCC
ATTCACAGCAGCAGCGCCTCCGTCGTTCGCTCGAGAGCCTGTAGATGGCT
TGGCTCTGGTGTCGACATCCCTGCTGTCAGTCAGCGCTTGGTTGCCCGCT
CCTCTTGATTGGCTGCTTTCGACAGCGACAGCAATTCCGCTCCTCTTCCA
CCAGAACACAAATCACCCTGACATACGCTCACGTCAACACATGGCCTGTT
GGATGCCAGGATAGCAATGGCTTGGGAGCCCCACACACACCAAAAGAGAG
CGTGTGCACAAAAACACGCGCCTGCCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1297:18797..19275+

>mRNA_E-siliculosus-1a_F_contig1297.1802.1 ID=mRNA_E-siliculosus-1a_F_contig1297.1802.1|Name=mRNA_E-siliculosus-1a_F_contig1297.1802.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=774bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1297:18797..19275+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAACCTACATACGGTATACGAAACGTTCGTTGTGCAGGCTTCGTACC
GTCATGCATGGCGTGGGGCATGGCGAAAAACACACCCGTGGCGTGTCGGC
GGGAATACCGCGCTGCGGCATGCGCAAAGAGCGGCCAAGACTCACACATA
GCATTGCGCGCCAGTACAACGCCATTCACAGCAGCAGCGCCTCCGTCGTT
CGCTCGAGAGCCTGTAGATGGCTTGGCTCTGGTGTCGACATCCCTGCTGT
CAGTCAGCGCTTGGTTGCCCGCTCCTCTTGATTGGCTGCTTTCGACAGCG
ACAGCAATTCCGCTCCTCTTCCACCAGAACACAAATCACCCTGACATACG
CTCACGTCAACACATGGCCTGTTGGATGCCAGGATAGATGCAACCTACAT
ACGGTATACGAAACGTTCGTTGTGCAGGCTTCGTACCGTCATGCATGGCG
TGGGGCATGGCGAAAAACACACCCGTGGCGTGTCGGCGGGAATACCGCGC
TGCGGCATGCGCAAAGAGCGGCCAAGACTCACACATAGCATTGCGCGCCA
GTACAACGCCATTCACAGCAGCAGCGCCTCCGTCGTTCGCTCGAGAGCCT
GTAGATGGCTTGGCTCTGGTGTCGACATCCCTGCTGTCAGTCAGCGCTTG
GTTGCCCGCTCCTCTTGATTGGCTGCTTTCGACAGCGACAGCAATTCCGC
TCCTCTTCCACCAGAACACAAATCACCCTGACATACGCTCACGTCAACAC
ATGGCCTGTTGGATGCCAGGATAG
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