mRNA_E-siliculosus-1a_F_contig1296.1794.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1296.1794.1
Unique NamemRNA_E-siliculosus-1a_F_contig1296.1794.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1296.1794.1 vs. uniprot
Match: D7G509_ECTSI (Uncharacterized protein n=5 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G509_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 7.230e-38
Identity = 92/130 (70.77%), Postives = 96/130 (73.85%), Query Frame = 1 
Query:    1 KDEEIELLKAQLAMRLKQPQEGEANAHTDVSTELPSPSLHSRWGSAENVPGVSSFQTKRHPSVSTDSSAAVIAAAASRTFVSKASRSSTKSVATTTYLDTTAEDKAATEFLTADTALTHWWLAATATSAG 390
            KDEEI+LLKAQLAM+LKQPQE           E P  S            GVSSFQ K HPSVSTDSSAAVIA AAS TFVSKASRS TKSVATTTYLDTTA+DKAA EFL ADTAL HWWL+ATATSAG
Sbjct:  247 KDEEIKLLKAQLAMQLKQPQEA-----CTAGGEAPRTSA-----------GVSSFQAKGHPSVSTDSSAAVIATAASGTFVSKASRSGTKSVATTTYLDTTADDKAAAEFLIADTALAHWWLSATATSAG 360
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1296.1794.1 vs. uniprot
Match: A0A6H5KBI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBI0_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.200e-18
Identity = 70/154 (45.45%), Postives = 77/154 (50.00%), Query Frame = 1 
Query:    1 KDEEIELLKAQLAMRLKQPQEG-------------------------------------------EANAHTDVSTELPSPS----------------------LHSRWGSAENVPGVSSFQTKRHPSVSTDSSAAVIAAAASRTFVSKASRSST 267
            KDEEI+LLKAQLA++ KQP+EG                                           EANAHTDVSTELPSP                         +RWGSAENVPGVSSFQT  + SV TDSSAA IA AAS TFVSKA+RS T
Sbjct:  305 KDEEIKLLKAQLAIQFKQPEEGQHTCERVADVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEANAHTDVSTELPSPRGLIXXXXXXXXXXXXXXXXXXXXXTRWGSAENVPGVSSFQTNNNHSVFTDSSAATIATAASGTFVSKATRSGT 458
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1296.1794.1 vs. uniprot
Match: D7FU49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU49_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.480e-13
Identity = 68/140 (48.57%), Postives = 82/140 (58.57%), Query Frame = 1 
Query:    1 KDEEIELLKAQLAMRLKQPQEGE-ANAHTDVSTELPSPSLHSRWGSAENVPGVSSFQTKRHPSV--------STDSSAAVIAAAASRTFV-SKASRSSTKSVATTTYLDTTAED--KAATEFLTADTALTHWWLAATATS 384
            KD EIE LK QLA+R+K P++ + A    D STE PSPSLHSRWGS   V G S F+     +         + DSSAAVIAAAA+ TFV SKASR +T   AT   + +T  D  +AA E L AD  L  W L   AT+
Sbjct:  248 KDSEIERLKTQLALRVKDPEKVDGAQDIADRSTEPPSPSLHSRWGS---VDGASIFRASNTSAAFKAPVGRKTPDSSAAVIAAAAAGTFVYSKASRRATVKSATKIVVASTVSDADRAAAEALIADAGLEAWGLTMRATT 384
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1296.1794.1 vs. uniprot
Match: D7FXP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP9_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.530e-10
Identity = 66/143 (46.15%), Postives = 77/143 (53.85%), Query Frame = 1 
Query:    1 KDEEIELLKAQLAMRLKQPQEGEANAHTDVSTELPSPSLHSRWGSAENVPGVSSFQTKRHPSVST--------DSSAAVIAAAASRTFV-SKASRSSTKSVATTTYLDTTAED--KAATEFLTADTALTHWWLAA--TATSAG 390
            KD EIE LKAQL   L   +   A    D STE PSPSLHSRWGSA+NV G S F+   + + S         ++SAA+IAAA   TFV SKASR +T  +AT     +   D    A E L AD  L  W L     ATSAG
Sbjct:   66 KDREIERLKAQL---LHSKEVDGAQDIADRSTEPPSPSLHSRWGSADNVDGASIFRAGNNSADSKTPCGRKAPNASAAIIAAAG--TFVYSKASRRATDKLATNVIATSAVSDADSFAAEALIADARLEAWGLTMRRAATSAG 203
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1296.1794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G509_ECTSI7.230e-3870.77Uncharacterized protein n=5 Tax=Ectocarpus silicul... [more]
A0A6H5KBI0_9PHAE1.200e-1845.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU49_ECTSI1.480e-1348.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXP9_ECTSI7.530e-1046.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1296contigE-siliculosus-1a_F_contig1296:3..1562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size393
Model size393
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1296.1794.1prot_E-siliculosus-1a_F_contig1296.1794.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1296 3..1562 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927814.3772717-CDS-E-siliculosus-1a_F_contig1296:2..661622927814.3772717-CDS-E-siliculosus-1a_F_contig1296:2..66Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1296 3..66 +
1696318691.4796848-CDS-E-siliculosus-1a_F_contig1296:2..661696318691.4796848-CDS-E-siliculosus-1a_F_contig1296:2..66Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1296 3..66 +
1622927814.389344-CDS-E-siliculosus-1a_F_contig1296:701..7501622927814.389344-CDS-E-siliculosus-1a_F_contig1296:701..750Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1296 702..750 +
1696318691.487308-CDS-E-siliculosus-1a_F_contig1296:701..7501696318691.487308-CDS-E-siliculosus-1a_F_contig1296:701..750Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1296 702..750 +
1622927814.4002244-CDS-E-siliculosus-1a_F_contig1296:1282..15621622927814.4002244-CDS-E-siliculosus-1a_F_contig1296:1282..1562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1296 1283..1562 +
1696318691.4945512-CDS-E-siliculosus-1a_F_contig1296:1282..15621696318691.4945512-CDS-E-siliculosus-1a_F_contig1296:1282..1562Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1296 1283..1562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1296.1794.1

>prot_E-siliculosus-1a_F_contig1296.1794.1 ID=prot_E-siliculosus-1a_F_contig1296.1794.1|Name=mRNA_E-siliculosus-1a_F_contig1296.1794.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=131bp
KDEEIELLKAQLAMRLKQPQEGEANAHTDVSTELPSPSLHSRWGSAENVP
GVSSFQTKRHPSVSTDSSAAVIAAAASRTFVSKASRSSTKSVATTTYLDT
TAEDKAATEFLTADTALTHWWLAATATSAG*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1296:3..1562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1296.1794.1 ID=mRNA_E-siliculosus-1a_F_contig1296.1794.1|Name=mRNA_E-siliculosus-1a_F_contig1296.1794.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1560bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1296:3..1562+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGACGAGGAGATCGAGCTCCTGAAGGCTCAGCTGGCCATGCGGCTCAA
GCAGCCGCAGGAAGGTCAGCATCCATGTGAACGTGTTGCCGATGTGGTGT
ACGCTAGTCGCGGGACACACACACACATTGTGCGCAGAGATCGCCTATAC
TCACGCCCGTGGATACCCTTTGAGCGCTTGCTTTGAGGAAGGCTTTCGAC
GAACGATCGTCGTACATACGCGTAGCGGGCATCACAACCTCAGCCGAAAC
GATGACTCGCGAGACTTCAAATATTTGGTGGAAGGGTGTGCTTACCAATT
AGGTTGGTCGTCAACGTCTTCATCGCATGGGAATGGTCATGTTGCAGCTC
GTCCTCTACCAGTTTGCGTTTTACTCCCTACTCGCACGGTGCATGGGAGA
CCACGATTTAGGAACCTATCAAACCTCAACAACAACTCAGTGCATGGTTT
TCGTACCGTCAATGTTTCCCCTATAGTCTAGAGAGTAAAGCGAATGTTGA
AATGTTGAAAGACGGGTGTTCCAGTGGATGCGTCCCATGCCCTCTCCCAA
CAAAATGTCATGTTACAAACCAAGCAAAGCACGAACCCGGTCGCGAGCGG
CGTCAAGAGCGCAACACTCCTCCTGTGTGTCTCACAAAACGCGGGTGTAC
CAACACAACATTCTGTGTGCTCTCTTCTTGCGTTTTTTCAATTTTGCAGG
CGAGGCCAACGCCCACACCGACGTCTCCACCGAGCTGCCCAGCCCCAGGT
ACGATATCAAGACGGCATGACCGTTCCTCGGTAGACTTGCCAGCGAACGG
TTTCGGCCGTTTGTTCTCTGTTTCAAGTTCCCTTTGTCGGTGGGTGCTTA
ACGACTGTGATGACATGGTTTTGGCGATTCGTACAGCGGGTTGTTCTTTA
CCAGGTATCACTGACGACTTCATTCAAGGTGTGTTCTACGATGCTTCATT
GATGGGATAATTTTCTTGCCACCTGCGGATAGTATACGTCGCAATACCAT
TCCCAGTAGGATATCTTCTATGTACCTTCGAGCAATCTAGGGGGAAGTTG
GGGGCGAAGTGATGCACAACCGTCCTCTTCAAGCACTTTGTTGGCGTATT
TCGGCCATTCCATCCCACCAGAACAGGATTAAAGGGATGTACGCATACCG
CAAGCAACAAAACCGGCCCGCTTGCTTGTTTGTCCACCGGTTTTATGGTC
ATCCAACGTGCATGCTTCCTCCCACTTTGCGGTGGTGCTTCCCTTCCGCG
CCCGCCGACTCTGTCCTATCGAACAAACAGCTTGCACAGCAGGTGGGGAA
GCGCCGAGAACGTCCCGGGTGTCTCGAGTTTCCAGACCAAGCGCCACCCG
TCCGTCTCCACCGACTCGTCCGCCGCTGTGATCGCAGCCGCCGCTTCGCG
GACCTTCGTCTCCAAGGCCTCCCGTTCGAGCACTAAGTCGGTCGCCACGA
CGACCTACCTGGACACCACCGCCGAGGACAAGGCGGCGACGGAGTTCCTT
ACTGCGGACACCGCGCTCACACACTGGTGGCTGGCGGCGACAGCTACCTC
GGCTGGGTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1296:3..1562+

>mRNA_E-siliculosus-1a_F_contig1296.1794.1 ID=mRNA_E-siliculosus-1a_F_contig1296.1794.1|Name=mRNA_E-siliculosus-1a_F_contig1296.1794.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=786bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1296:3..1562+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AAGGACGAGGAGATCGAGCTCCTGAAGGCTCAGCTGGCCATGCGGCTCAA
GCAGCCGCAGGAAGAAGGACGAGGAGATCGAGCTCCTGAAGGCTCAGCTG
GCCATGCGGCTCAAGCAGCCGCAGGAAGGCGAGGCCAACGCCCACACCGA
CGTCTCCACCGAGCTGCCCAGCCCCAGGCGAGGCCAACGCCCACACCGAC
GTCTCCACCGAGCTGCCCAGCCCCAGCTTGCACAGCAGGTGGGGAAGCGC
CGAGAACGTCCCGGGTGTCTCGAGTTTCCAGACCAAGCGCCACCCGTCCG
TCTCCACCGACTCGTCCGCCGCTGTGATCGCAGCCGCCGCTTCGCGGACC
TTCGTCTCCAAGGCCTCCCGTTCGAGCACTAAGTCGGTCGCCACGACGAC
CTACCTGGACACCACCGCCGAGGACAAGGCGGCGACGGAGTTCCTTACTG
CGGACACCGCGCTCACACACTGGTGGCTGGCGGCGACAGCTACCTCGGCT
GGGTGACTTGCACAGCAGGTGGGGAAGCGCCGAGAACGTCCCGGGTGTCT
CGAGTTTCCAGACCAAGCGCCACCCGTCCGTCTCCACCGACTCGTCCGCC
GCTGTGATCGCAGCCGCCGCTTCGCGGACCTTCGTCTCCAAGGCCTCCCG
TTCGAGCACTAAGTCGGTCGCCACGACGACCTACCTGGACACCACCGCCG
AGGACAAGGCGGCGACGGAGTTCCTTACTGCGGACACCGCGCTCACACAC
TGGTGGCTGGCGGCGACAGCTACCTCGGCTGGGTGA
back to top