mRNA_E-siliculosus-1a_F_contig1295.1792.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1295.1792.1 vs. uniprot
Match: D7FWU7_ECTSI (EF-hand, calcium binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU7_ECTSI) HSP 1 Score: 1244 bits (3218), Expect = 0.000e+0 Identity = 704/820 (85.85%), Postives = 709/820 (86.46%), Query Frame = 1
Query: 454 MSERAPWLAGSSRESNNSGGRRGPSLETATKALASGRGPVEGKXXXXXXXXXXXXHQEFMRELASHNGLQLRCSQGEDERARHRREVDRRIQIQENCVRRPSVGQSKVLLKAKILGSIGGGPFELLRAFRKMTCGGGTVIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDFSEFCEWMEDTDDXXXXPGGGDAXXXXXXXXX------TSKGRVGGFRPSSGGSDKSVSKRKMRDAQAKVKAASERVPERTMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVGGGGGWDDDTTKTPAMRAQERVTRAFREQAGKMTSETLHKVLREKLISTVKPGGGTLLRTYHNLHRSGNVGKCSTRGVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIMYAEDLAPQEPRETPVGLGTPPCPDAACDRPRGGVRPLTPGWISDETAAALDGTSNDTTDKRXXXXXXXXXXXXXXXNVDNLPAKEXXXXXXXXGEERCGAGPHGASKRKGQSRPACEQPVLGSSPPVTNGAKAEEKAREHPLSYMKTCVRSRWRHMLSAFRRLDPLRTGAVTSDEFRQVLTANKAMQSLQKGDLAALAAKHAIARGRVDYPRFMRHLLLGNGPAGDRPAGGVGRENDEDGGGLGSSPRHRSATSAKATRPGLKVSMSTGALPAPGAISSPSPRRDRLHQLRPLDRQAARHGSGGGXXXXGNELRDRAIAICRELQ 2895
MSERAPW AGSSR SNNSGGRRG SLETATK LASGR XXXXX HQEFMRELASHNGLQLRCSQGEDERARHRREVDRRIQIQE+CVRRPSVGQSKVLLKAKILGSIGGGPFELLRAFRKMTCGGGTVIDFKGFREGVKKL+LGLTEPEILDFFRSFDADGSGGIDFSEFCEWME TDD PG XXXXXXXXX TSKGR GGFRPSSGGSDKSVSKRKMRDAQAKVKAASERVPERTMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGV G GGWDDDTTKTPAMRAQERVTRAFREQAG GVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIMYAEDLAPQEP ETPVGLGTPPCPDAACDRPRGGVRPLTPGWISDE AA DGTSND TDKR XXXXXXXXXX N NLP KEXXXXX GE CGAGPH ASKR+G+SRP CEQPVLGSSP VTNGAKAEEK MK CVRSRWRHMLSAFRRLDPLRTGAVTSDEFRQVLTANKAMQSLQKGDLAALAAKHAIARGRVDYPRFMRHLLLGNGPAGDRPAGGVGR+NDEDGGG GSSPRHRSATSAKATRPGLKVSMSTGALPAPGAISSPSPRRDRLHQLRPLDRQAARHGSGGGXXXXGNELRDRAIAICRELQ
Sbjct: 1 MSERAPWPAGSSRGSNNSGGRRGSSLETATKGLASGRXXXXXXXXXXXDDDNDNEHQEFMRELASHNGLQLRCSQGEDERARHRREVDRRIQIQEDCVRRPSVGQSKVLLKAKILGSIGGGPFELLRAFRKMTCGGGTVIDFKGFREGVKKLSLGLTEPEILDFFRSFDADGSGGIDFSEFCEWMEATDDSADEPGXXXXXXXXXXXXXXXXXXXTSKGREGGFRPSSGGSDKSVSKRKMRDAQAKVKAASERVPERTMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVAGEGGWDDDTTKTPAMRAQERVTRAFREQAG---------------------------------------------GVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIMYAEDLAPQEPLETPVGLGTPPCPDAACDRPRGGVRPLTPGWISDENAATADGTSNDNTDKRERNXXXXXXXXXX--NFGNLPGKEXXXXXRSAGEG-CGAGPHVASKRQGRSRPVCEQPVLGSSP-VTNGAKAEEK--------MKACVRSRWRHMLSAFRRLDPLRTGAVTSDEFRQVLTANKAMQSLQKGDLAALAAKHAIARGRVDYPRFMRHLLLGNGPAGDRPAGGVGRDNDEDGGGRGSSPRHRSATSAKATRPGLKVSMSTGALPAPGAISSPSPRRDRLHQLRPLDRQAARHGSGGGXXXXGNELRDRAIAICRELQ 763
BLAST of mRNA_E-siliculosus-1a_F_contig1295.1792.1 vs. uniprot
Match: A0A6H5KCV0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV0_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 2.060e-18 Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1
Query: 868 VIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDFSE 993
VIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDFSE
Sbjct: 2 VIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDFSE 43
BLAST of mRNA_E-siliculosus-1a_F_contig1295.1792.1 vs. uniprot
Match: A0A2D4BW89_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW89_PYTIN) HSP 1 Score: 76.3 bits (186), Expect = 2.210e-10 Identity = 87/347 (25.07%), Postives = 139/347 (40.06%), Query Frame = 1
Query: 886 FREGVKKLNLGLTEPEILDFFRSFDADGSGGIDFSEFCEWMEDTDDXXXXPGGGDAXXXXXXXXXTSKGRVGGFRPSSGGSDKSVSKRKMRDAQ-AKVKAASERVPER-TMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVGGGGGWDDDTTKTPAMRAQERVTRAFREQAGKMTSETLHKVLREKLISTVKPGGGTLLRTYHNLHRSGNVGKCSTRGVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIM 1920
F + KL L LT ++ + F FD D SG +D +EF + + D F S K K K+ +++ A A + V T+AE EQ+LR+KI +AFR + G D +F A++T L L + + F+ FD +GSG D +EF V D G ++ + + + D K A+ ER ++ + + + K +R+K+ + T + Y +S ++ + +F++ + G +T AQ E LFRRYD DGS DID EF I+
Sbjct: 426 FNVAMVKLGLKLTSRQLDELFELFDFDKSGDLDXNEFVQGVMLDD----------------------------FSTKHWYSIKD--KHKVEESRRALYSMAVQSVXSSWTIAEIEQMLREKIEQRTSKSSDCFRQAFRIFKKVNGIKPD--EFHAALETIGLALDRSQSDILFQRFDKNGSGDXDLDEFIHGVLPPDYTGQQ--WVAAADEMHREA--------------DLRKKYEAVHNPERYMNEVEMESWSL--DEIEKRIRDKIQQSTSKSSDTFRQAYRIFKKSNHI--------TIDEFRDRLLALGFRLTRAQCEGLFRRYDTDGSNDIDLQEFCMRIL 714
BLAST of mRNA_E-siliculosus-1a_F_contig1295.1792.1 vs. uniprot
Match: A0A225WGR4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WGR4_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 3.410e-6 Identity = 51/205 (24.88%), Postives = 87/205 (42.44%), Query Frame = 1
Query: 1306 GRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVGGGGGWDDDTTKTPAMRAQERVTRAFREQAGKMTSETLHKVLREKLISTVKPGGGTLLRTYHNLHRSGNVGKCSTRGVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIM 1920
G+ T + +D A++ L L E +++ F FD D +G +D +F G +L D T+ F + DD K +M Q V ++ T + ++LREK+ + + + G++ +F ++ G+ +T Q + LFRR+DKDGSGDID +EF+ I+
Sbjct: 345 GKPTGISRSDLNIAMRKLGLQLSEKQLQDLFDTFDFDKTGDLDVNKF------------VQGVMLDDYSTS-----FWLSIKDRQKVDDSRKKLYSMAVQS-VQESW-------TIADIERMLREKIEQRTSKSSDCFRQAFRIFKK--------VNGIKPHEFHSSLEAIGLAMTRVQSDILFRRFDKDGSGDIDLNEFIHGIL 516
BLAST of mRNA_E-siliculosus-1a_F_contig1295.1792.1 vs. uniprot
Match: A0A078AAI2_STYLE (Ef hand family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AAI2_STYLE) HSP 1 Score: 62.0 bits (149), Expect = 5.810e-6 Identity = 45/213 (21.13%), Postives = 96/213 (45.07%), Query Frame = 1
Query: 826 LLRAFRKMTCGGGTVIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDFSEFCEWMEDTDDXXXXPGGGDAXXXXXXXXXTSKGRVGGFRPSSGGSDKSVSKRKMRDAQAKVKAASERVPERTMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGG 1464
L+++F+ +DF F+ + K+ + + E ++ FFR++D++G+G +D+ EF + + ++ + G +S G ++ + R +RD + ++A +++ +R G IG L R F+ M +D +F++AV+ F + + + ++ F FD + G ID++EF + G
Sbjct: 42 LIKSFKFFDFSNSGEVDFPTFQRAIAKMGVVVDEEDLEVFFRAYDSNGNGKLDYKEFSDIV------------------------FNRAQASGSGNASQGRQQASTYRGLRDPKPYIEAIRDKIKQRGAR-----------GIIG-----LQRVFKIMDDNNSKSLDKQEFKKAVRDFKIDIPDEYIDIIFAAFDLNRDGTIDYDEFLRIIRG 214
BLAST of mRNA_E-siliculosus-1a_F_contig1295.1792.1 vs. uniprot
Match: W2QEX6_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2QEX6_PHYPN) HSP 1 Score: 60.8 bits (146), Expect = 1.320e-5 Identity = 50/205 (24.39%), Postives = 87/205 (42.44%), Query Frame = 1
Query: 1306 GRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVGGGGGWDDDTTKTPAMRAQERVTRAFREQAGKMTSETLHKVLREKLISTVKPGGGTLLRTYHNLHRSGNVGKCSTRGVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIM 1920
G+ T + +D A+K L + +++ F FD D +G +D +F G +L D+ T+ F V +D K +M A V ++ T + ++LREK+ + + + G++ +F A+ G+ +T Q + LFRR+DKDGSGDID +EF+ ++
Sbjct: 340 GKPTGISRSDLNTAMKKLGLSVSNKQLQDLFATFDFDKTGDLDVNKF------------VQGVMLDDNSTS-----FWLSVKDRQKVEDSRRKLYSM-AVASVQESW-------TIADIERMLREKIEQRTSRSSDCFRQAFRIFKK--------VNGIKPHEFHAALEAIGLALTRVQSDILFRRFDKDGSGDIDLNEFIHGVL 511
BLAST of mRNA_E-siliculosus-1a_F_contig1295.1792.1 vs. uniprot
Match: A0A0W8CN27_PHYNI (Histidine protein methyltransferase 1 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CN27_PHYNI) HSP 1 Score: 60.8 bits (146), Expect = 1.420e-5 Identity = 50/205 (24.39%), Postives = 87/205 (42.44%), Query Frame = 1
Query: 1306 GRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVGGGGGWDDDTTKTPAMRAQERVTRAFREQAGKMTSETLHKVLREKLISTVKPGGGTLLRTYHNLHRSGNVGKCSTRGVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIM 1920
G+ T + +D A+K L + +++ F FD D +G +D +F G +L D+ T+ F V +D K +M A V ++ T + ++LREK+ + + + G++ +F A+ G+ +T Q + LFRR+DKDGSGDID +EF+ ++
Sbjct: 609 GKPTGISRSDLNTAMKKLGLSVSNKQLQDLFATFDFDKTGDLDVNKF------------VQGVMLDDNSTS-----FWLSVKDRQKVEDSRRKLYSM-AVASVQESW-------TIADIERMLREKIEQRTSRSSDCFRQAFRIFKK--------VNGIKPHEFHAALEAIGLALTRVQSDILFRRFDKDGSGDIDLNEFIHGVL 780
BLAST of mRNA_E-siliculosus-1a_F_contig1295.1792.1 vs. uniprot
Match: A0A8J5J8P2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J8P2_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.770e-5 Identity = 51/205 (24.88%), Postives = 86/205 (41.95%), Query Frame = 1
Query: 1306 GRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVGGGGGWDDDTTKTPAMRAQERVTRAFREQAGKMTSETLHKVLREKLISTVKPGGGTLLRTYHNLHRSGNVGKCSTRGVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIM 1920
G+ T + D A+K L + +V+ F FD D +G +D +F G +L D+ T+ F V +D K +M A V ++ T + ++LREK+ + + + G++ +F A+ G+ +T Q + LFRR+DKDGSGDID +EF+ ++
Sbjct: 646 GKPTGISCTDLSTALKKLGLKVSTKQVQDLFATFDFDKTGDLDVNKF------------VQGVMLDDNSTS-----FWLSVKDRQKVEDSRRKLYSM-AVASVQESW-------TIADIERMLREKIEQRTSRSSDCFRQAFRIFKK--------VNGIKPHEFHAALEAIGLALTRVQSDILFRRFDKDGSGDIDLNEFIHGVL 817
BLAST of mRNA_E-siliculosus-1a_F_contig1295.1792.1 vs. uniprot
Match: A0A662XNL7_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNL7_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 2.320e-5 Identity = 47/205 (22.93%), Postives = 85/205 (41.46%), Query Frame = 1
Query: 1306 GRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVGGGGGWDDDTTKTPAMRAQERVTRAFREQAGKMTSETLHKVLREKLISTVKPGGGTLLRTYHNLHRSGNVGKCSTRGVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIM 1920
G+ + + +DF A++ + L ++ F FD D +G +D +F G +L D ++ F V +D K +M Q T E + ++LREK+ + + + G++ +F A+ G+ +T AQ + LFRR+D++GSGDID +EF+ ++
Sbjct: 391 GKPSGISSDDFSNAMRMLGIKLSGKQMRELFDTFDFDKTGDLDLNKF------------VQGVMLDDYSSS-----FWMSVKDRQKLEDSRVKLYSMAVQSVQ--------DSWTIEEIERMLREKIEQRTSRSSDCFRQAFRIFKK--------VNGIKPDEFHSALETIGLQLTRAQSDLLFRRFDRNGSGDIDLNEFIHGVL 562
BLAST of mRNA_E-siliculosus-1a_F_contig1295.1792.1 vs. uniprot
Match: A0A6G0LGF7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0LGF7_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 4.360e-5 Identity = 48/205 (23.41%), Postives = 86/205 (41.95%), Query Frame = 1
Query: 1306 GRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFEEFCAWVGGTDAAGAADGFLLPDSKTTKSSPGFIPGVGGGGGWDDDTTKTPAMRAQERVTRAFREQAGKMTSETLHKVLREKLISTVKPGGGTLLRTYHNLHRSGNVGKCSTRGVELGDFKEAVHRYGMGVTDAQVEKLFRRYDKDGSGDIDFHEFLKLIM 1920
G+ T + +D A++ L + + +++ F FD D +G +D +F G +L D T+ F + DD K +M Q V ++ + ++LREK+ + + + G++ +F A+ G+ +T Q + LFRR+DKDGSGDID +EF+ ++
Sbjct: 19 GKPTGISCSDLNPALRRLGLRVSDKQLQDLFDTFDFDKTGDLDVNKF------------VQGVMLDDYSTS-----FWLSLKDRQKVDDSRQKLYSMAVQS-VQESW-------NIADIERMLREKIEQRTSRSSDCFRQAFRIFKK--------VNGIKPHEFHAALEAIGLALTRVQSDILFRRFDKDGSGDIDLNEFIHGVL 190 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1295.1792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1295.1792.1 >prot_E-siliculosus-1a_F_contig1295.1792.1 ID=prot_E-siliculosus-1a_F_contig1295.1792.1|Name=mRNA_E-siliculosus-1a_F_contig1295.1792.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=965bp MGPVVQAQPSPAAATRGGSSGGGKFPTRKLSGDLKLRLARLPSLGGGGALback to top mRNA from alignment at E-siliculosus-1a_F_contig1295:1392..23336- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1295.1792.1 ID=mRNA_E-siliculosus-1a_F_contig1295.1792.1|Name=mRNA_E-siliculosus-1a_F_contig1295.1792.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=21945bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1295:1392..23336- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1295:1392..23336- >mRNA_E-siliculosus-1a_F_contig1295.1792.1 ID=mRNA_E-siliculosus-1a_F_contig1295.1792.1|Name=mRNA_E-siliculosus-1a_F_contig1295.1792.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=5790bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1295:1392..23336- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |