mRNA_E-siliculosus-1a_F_contig1294.1788.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1294.1788.1
Unique NamemRNA_E-siliculosus-1a_F_contig1294.1788.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1294.1788.1 vs. uniprot
Match: D8LI49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI49_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.210e-36
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 QAVNFTCYQVFKTKLSAVLGREELAPWQHMLLGGLSGGIGPCVNNPLDVSKTRLQQQVVIPGQAPKY 201
            QAVNFTCYQVFKTKLS +LG EELAPW HMLLGGLSGGIGPCVNNPLDVSKTRLQQQV+IPGQAPKY
Sbjct:  169 QAVNFTCYQVFKTKLSDLLGTEELAPWHHMLLGGLSGGIGPCVNNPLDVSKTRLQQQVLIPGQAPKY 235
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BLAST of mRNA_E-siliculosus-1a_F_contig1294.1788.1 vs. uniprot
Match: D7FUW2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUW2_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 4.330e-33
Identity = 58/67 (86.57%), Postives = 61/67 (91.04%), Query Frame = 1 
Query:    1 QAVNFTCYQVFKTKLSAVLGREELAPWQHMLLGGLSGGIGPCVNNPLDVSKTRLQQQVVIPGQAPKY 201
            QAVNFTCYQ+FKT+LS   G EELA WQHMLLGGLSGGIGPCVNNPLDV KTRLQ+QVVIPGQAPKY
Sbjct:  184 QAVNFTCYQMFKTQLSLYTGSEELASWQHMLLGGLSGGIGPCVNNPLDVVKTRLQKQVVIPGQAPKY 250
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BLAST of mRNA_E-siliculosus-1a_F_contig1294.1788.1 vs. uniprot
Match: A0A6V1U9P6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U9P6_HETAK)

HSP 1 Score: 107 bits (267), Expect = 1.280e-26
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 QAVNFTCYQVFKTKLSAVLGREELAPWQHMLLGGLSGGIGPCVNNPLDVSKTRLQQQVVIPGQAPKY 201
            QAVNFTCYQ+FK +     GREELAPWQHML+GGLSGG GP  NNPLDV KTRLQ+Q V PGQ PKY
Sbjct:  188 QAVNFTCYQIFKEQWLKRSGREELAPWQHMLIGGLSGGFGPAANNPLDVVKTRLQKQRVEPGQRPKY 254
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BLAST of mRNA_E-siliculosus-1a_F_contig1294.1788.1 vs. uniprot
Match: A0A836CM83_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM83_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.180e-25
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    1 QAVNFTCYQVFKTKLSAVLGREELAPWQHMLLGGLSGGIGPCVNNPLDVSKTRLQQQVVIPGQAPKY 201
            QAVNF+ YQ+FKTK  A    +EL  WQHML+GGLSGG+GP VNNPLDV KTRLQ+QVVIPG+ PKY
Sbjct:  194 QAVNFSFYQIFKTKWEAARDGKELIAWQHMLIGGLSGGMGPVVNNPLDVVKTRLQRQVVIPGEVPKY 260
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BLAST of mRNA_E-siliculosus-1a_F_contig1294.1788.1 vs. uniprot
Match: A0A6V1U9R0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U9R0_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 2.330e-20
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QAVNFTCYQVFKTKLSAVLGREELAPWQHMLLGGLSGGIGPCVNNPLDVSKTRLQ 165
            QAVNFTCYQ+FK +     GREELAPWQHML+GGLSGG GP  NNPLDV KTRLQ
Sbjct:  188 QAVNFTCYQIFKEQWLKRSGREELAPWQHMLIGGLSGGFGPAANNPLDVVKTRLQ 242
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BLAST of mRNA_E-siliculosus-1a_F_contig1294.1788.1 vs. uniprot
Match: A0A6U4GJ12_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4GJ12_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.450e-20
Identity = 44/68 (64.71%), Postives = 52/68 (76.47%), Query Frame = 1 
Query:    1 QAVNFTCYQVFKTKLSAVL-GREELAPWQHMLLGGLSGGIGPCVNNPLDVSKTRLQQQVVIPGQAPKY 201
            QAVNFT YQ  K  +SA      ELA WQH+LLGGLSGG+GP  NNPLDV KTR+Q+QV++PG+ PKY
Sbjct:  193 QAVNFTAYQSMKDWVSANFRDGGELASWQHLLLGGLSGGMGPLANNPLDVVKTRMQKQVILPGETPKY 260
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BLAST of mRNA_E-siliculosus-1a_F_contig1294.1788.1 vs. uniprot
Match: W7U0T5_9STRA (Succinate fumarate mitochondrial transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0T5_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.020e-20
Identity = 43/67 (64.18%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 QAVNFTCYQVFKTKLSAVLGREELAPWQHMLLGGLSGGIGPCVNNPLDVSKTRLQQQVVIPGQAPKY 201
            QAVNFT YQ  KT       R+EL PW+ ML GGLSGG+GP VNNPLDV KTRLQ+Q ++ GQ PKY
Sbjct:  207 QAVNFTTYQAVKTAWLERQQRKELLPWESMLFGGLSGGLGPLVNNPLDVVKTRLQKQRIVEGQLPKY 273
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BLAST of mRNA_E-siliculosus-1a_F_contig1294.1788.1 vs. uniprot
Match: A0A1Z5JX09_FISSO (Solute carrier family 25 (Mitochondrial citrate transporter), member 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JX09_FISSO)

HSP 1 Score: 89.7 bits (221), Expect = 1.100e-19
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:    1 QAVNFTCYQVFKTKLSAVLGREELAPWQHMLLGGLSGGIGPCVNNPLDVSKTRLQQQVVIPGQAPKY 201
            QAVNFT Y   K ++ A  G + L  WQ +L+GGLSGG+GP VNNPLDV KTRLQ+QV+ PG+ PKY
Sbjct:  246 QAVNFTAYNYIKREVMARQGTDSLDSWQSLLIGGLSGGMGPLVNNPLDVVKTRLQKQVITPGKTPKY 312
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BLAST of mRNA_E-siliculosus-1a_F_contig1294.1788.1 vs. uniprot
Match: A0A7S1DE10_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DE10_CYCTE)

HSP 1 Score: 85.9 bits (211), Expect = 1.320e-19
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    1 QAVNFTCYQVFKTKLSAVLGREELAPWQHMLLGGLSGGIGPCVNNPLDVSKTRLQQQVVIPGQAPKY 201
            QA NFT YQ  K K+       EL  WQ +LLGG+SGG+GP VNNPLDV KTR+Q+QVV PG+ PKY
Sbjct:   48 QAANFTGYQFLKRKVLENQQTSELQHWQSLLLGGISGGLGPLVNNPLDVVKTRIQKQVVTPGKQPKY 114
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BLAST of mRNA_E-siliculosus-1a_F_contig1294.1788.1 vs. uniprot
Match: A0A0L0FIA2_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FIA2_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 1.750e-19
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    1 QAVNFTCYQVFKTKLSAVLGREELAPWQHMLLGGLSGGIGPCVNNPLDVSKTRLQQQVVIPGQAPKY 201
            QA NFT YQ  K ++ +  G EEL PWQH+++GG SG +GP  N+PLDV KTRLQ+Q ++ GQ PKY
Sbjct:  185 QAANFTAYQEIKKRMISYQGVEELQPWQHLMIGGFSGAMGPLCNSPLDVIKTRLQKQTIVKGQKPKY 251
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1294.1788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI49_ECTSI1.210e-3692.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUW2_ECTSI4.330e-3386.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1U9P6_HETAK1.280e-2674.63Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A836CM83_9STRA4.180e-2571.64Mitochondrial carrier domain-containing protein n=... [more]
A0A6V1U9R0_HETAK2.330e-2076.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U4GJ12_9STRA2.450e-2064.71Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
W7U0T5_9STRA6.020e-2064.18Succinate fumarate mitochondrial transporter n=2 T... [more]
A0A1Z5JX09_FISSO1.100e-1961.19Solute carrier family 25 (Mitochondrial citrate tr... [more]
A0A7S1DE10_CYCTE1.320e-1961.19Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A0L0FIA2_9EUKA1.750e-1956.72Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1294contigE-siliculosus-1a_F_contig1294:121..2539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size201
Model size202
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko00536,ko01000,ko02000
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
CAZyGH79
COG Functional cat.U
EC3.2.1.166
EggNOG OGsKOG0756@1,KOG0756@2759
EggNOG free text desc.mitochondrial tricarboxylic acid transmembrane transport
GOsGO:0003674,GO:0005215,GO:0005310,GO:0005342,GO:0005469,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006835,GO:0006839,GO:0006855,GO:0008150,GO:0008509,GO:0008514,GO:0015075,GO:0015138,GO:0015141,GO:0015238,GO:0015291,GO:0015297,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015741,GO:0015744,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071422,GO:0071702,GO:0098656,GO:1903825,GO:1905039
KEGG ModuleM00078
KEGG Pathwayko00531,ko01100,ko05205,map00531,map01100,map05205
KEGG ReactionR07811
KEGG TC2.A.29.7
KEGG koko:K07964,ko:K15100
Preferred nameSFC1
Seed eggNOG ortholog2880.D8LI49
Seed ortholog evalue3.3e-29
Seed ortholog score133.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927813.4491274-CDS-E-siliculosus-1a_F_contig1294:120..2911622927813.4491274-CDS-E-siliculosus-1a_F_contig1294:120..291Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1294 121..291 +
1696318691.0815895-CDS-E-siliculosus-1a_F_contig1294:120..2911696318691.0815895-CDS-E-siliculosus-1a_F_contig1294:120..291Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1294 121..291 +
1622927813.462421-CDS-E-siliculosus-1a_F_contig1294:2508..25381622927813.462421-CDS-E-siliculosus-1a_F_contig1294:2508..2538Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1294 2509..2538 +
1696318691.092124-CDS-E-siliculosus-1a_F_contig1294:2508..25381696318691.092124-CDS-E-siliculosus-1a_F_contig1294:2508..2538Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1294 2509..2538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1294.1788.1prot_E-siliculosus-1a_F_contig1294.1788.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1294 121..2538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1294.1788.1

>prot_E-siliculosus-1a_F_contig1294.1788.1 ID=prot_E-siliculosus-1a_F_contig1294.1788.1|Name=mRNA_E-siliculosus-1a_F_contig1294.1788.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=67bp
QAVNFTCYQVFKTKLSAVLGREELAPWQHMLLGGLSGGIGPCVNNPLDVS
KTRLQQQVVIPGQAPKY
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mRNA from alignment at E-siliculosus-1a_F_contig1294:121..2539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1294.1788.1 ID=mRNA_E-siliculosus-1a_F_contig1294.1788.1|Name=mRNA_E-siliculosus-1a_F_contig1294.1788.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2419bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1294:121..2539+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCCGTCAACTTCACCTGCTATCAAGTCTTCAAGACAAAGTTATCTGC
TGTCCTGGGTAGGGAGGAGCTAGCACCGTGGCAGCACATGTTGCTAGGGG
GGCTCAGCGGTGGAATCGGGCCGTGCGTCAACAACCCGCTCGACGTTAGC
AAAACTCGCTTGCAGCAGCAGGTGCGCTGTTGTCGAACTTTTTGTTTTTT
GGCGTCGCAGGTCTGTGAATAGCGCCCTTTTGCATTGCGTCTACATCGGT
ACTAGCCGACAGGACTGTTCAGGCGCAAAAGCTTCGCTTGAGGCCGACAA
GAGACTGCAAGTTGACTCAAGACCTTTCTTATTACGAGAGAAGAGACATG
AGGGAGGCAGGAATAACCTTGCTCGCCATTCCCGTCACACCCATGTCATC
CACGTACCCCCCCCTAGTAGTCCCCAAGATCAGTTCACTGCCGAGAACCC
CCAAACAGCCCGCCGAGAAACGATATTCACGACCCTCTACGAACTGCCAG
GCCAAACGGCAGTTAATAGAAACCTTCAATAAATCCAAAAACTATCCATC
GTTTATATCAAAGATATTCACTATCGATCATCTCCGATTACTGGCTCTTT
TTCAGATTTCAGGTTTTATCACAATATTTCTTCCTTGTGCGCCAATGTGG
TTTGAGTCAATCACCAAAATCAACCCGCTCGAGAACCTGTTTTCACCAAG
CTCTTAGACAGTGAAAAACAAGCAATTTCCCGAACACCCACCAGAGGTCA
ACATTATTTCGGGATCGGGTCAGAACAAGGACAGGTCACTTCCAGGAAGA
TGTGTCTACCACTCAACACCAAATTCCCGTAATCAACATGTTCCAACTTT
TGGACGCACCGAGGCCTCAGCCGTGACTTATGATAACATGCCAAGCCCAT
TCTCCCGAACACGTACTAACATCAAATAAACAAACCCAACAGCCCCCGTA
CAGTAACATTCCCCTCGAGCATGAAACCAAATCAGAGTACTCTTGTATCT
CGAAACAAGTACCAACTTCTACTAGGGTCATGGAACCCTAATCTCCTCCG
CCATGACTCTCGTGCAGTACAACCCTGACGCCAGACCAGAAAACAGCAAA
ACAACAACAACAGTAGAAAAGGGCGCTACTCGACAGGCACAATAAAAACC
CCAGGACACACAAAGCAACGCCCCCGCCTCTGAACGTTACACGTGCCAGA
TGGATACCAAAAACGGAGGCAAACAGCAATCCAGCACAAAACAAAATCAA
TGAGTTTTCCTGACGCAGTCGCGATGCACGGTTTCAATAGGACATGTGCG
TTGTTGGTCCGATCGTGCATGAGCAATGTACCTGAATCACCCCCCAGACT
ACACTCTGGCGGAAATGGTGGTGGATATCGATGTGCTTCGAGTTGGGAAT
AGCAGCCCGGGTCATTTGCCAAGCGCATGGCATCTACATTGTCCTCTTGC
ACTGAAGTGCACCCCACATCGCGTTCCGGAAACATAGAAACTCTACATAT
CCAAATAGCCTCGTTCATCTATGACTACGTACTCCACTTTCTGTCGAGGA
CAGGGTGACGCTCTTTTGCGTCCTGCACGTACACATCACACATGTACCAG
TGAACATCACTGACACCCCAGAAACAGACAGCCGCTTGGTTGCCTTGTTG
GCGAAACCGCATCGACCAACCCCCCCCGACTGCCGCGCCCCTCTGAAAAG
TAACACCGAACACTACTCGTGGATCCAATGCACATCAAGATATGCTACGC
CGTTTTTTCCAGTGCAATCGTTTCGGCGATTACTCGAATACCTCGCCACG
GCTCGCACCATCTACCGTGACTCACCCCGCGAGAACACGTGGTCTACACC
GGTGCCGCTGTGAGCCACACGATATACTGTGTTTGCGTGTCACAGCTTCG
TAAGAGACCGATAGAGAAAAGAAGGTTGACTCGAGACCCTTGTTGTTTAG
AGAGCGAGAGACACGGAGGAGGCAGGAAGAAACTCCCTCAACATGTCCAT
CATATCCATGTGTCATCCTCGTTCCCCGGGGCCCCGGGGGGCCCGTAGAT
CAATACTCTGCCGAGCACCCCCAAACGAGGACACTCGCCGGGAGCTTGTG
AAGGAAAAAGAGAAAACAGTCGGAAAAGTTGGCGTGCAGACACCGTGCGC
CTTGGTCCATGTTGTGACACAGTGAGCGTGCGCGCGTCTTACAAAGTTGC
CTGTCGTCGGTGCCGGCTTATTTTTTTTCCGTTTCTCCGACATCGTTCAA
ATAAGTGGTACACACACAGGGTCGCGCACAGTTATTTCGCCGACTAAGGT
TTCCTTGCGGGCGGCGTCGTACACCAACCCCTCCACCACCCCGCACCCCC
GTCGTCGAAAACGCTTGCTGCCATGAACCGCTTCGAAGGTGGTGATCCCC
GGCCAGGCGCCCAAGTACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1294:121..2539+

>mRNA_E-siliculosus-1a_F_contig1294.1788.1 ID=mRNA_E-siliculosus-1a_F_contig1294.1788.1|Name=mRNA_E-siliculosus-1a_F_contig1294.1788.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=402bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1294:121..2539+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCCGTCAACTTCACCTGCTATCAAGTCTTCAAGACAAAGTTATCTGC
TGTCCTGGGTAGGGAGGAGCTAGCACCGTGGCAGCACATGTTGCTAGGGG
GGCTCAGCGGTGGAATCGGGCCGTGCGTCAACAACCCGCTCGACGTTAGC
AAAACTCGCTTGCAGCAGCAGCAGGCCGTCAACTTCACCTGCTATCAAGT
CTTCAAGACAAAGTTATCTGCTGTCCTGGGTAGGGAGGAGCTAGCACCGT
GGCAGCACATGTTGCTAGGGGGGCTCAGCGGTGGAATCGGGCCGTGCGTC
AACAACCCGCTCGACGTTAGCAAAACTCGCTTGCAGCAGCAGGTGGTGAT
CCCCGGCCAGGCGCCCAAGTACGTGGTGATCCCCGGCCAGGCGCCCAAGT
AC
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