mRNA_E-siliculosus-1a_F_contig1292.1784.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1292.1784.1 vs. uniprot
Match: D7G468_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G468_ECTSI) HSP 1 Score: 334 bits (857), Expect = 8.340e-116 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1
Query: 1 PQAKAPKWYSGDDVKPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMIF 519
PQAKAPKWYSGDDVKPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMIF
Sbjct: 7 PQAKAPKWYSGDDVKPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMIF 179
BLAST of mRNA_E-siliculosus-1a_F_contig1292.1784.1 vs. uniprot
Match: A0A835YT51_9STRA (60S ribosomal protein L6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT51_9STRA) HSP 1 Score: 214 bits (545), Expect = 3.380e-68 Identity = 113/172 (65.70%), Postives = 132/172 (76.74%), Query Frame = 1
Query: 19 KWYSGDDVKP----KAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMT-NPMLKAYLNAKFSLKKGDRPHEMIF 519
+WY DD+K KA H PTKLRS+ITPGT+ +LLSGRFRGKRVVFLKQ+ SGTLLVTGPY VNGVP+RRVNQAYVIATS +DVSKV + A DD+YF R A KT ED FF Q +K S VSD++K DQ VDA +LA ++ + +LKAYLNAKFSL K DRPHEM+F
Sbjct: 14 RWYPADDIKAPRKSKAKRSVHKPTKLRSSITPGTVCVLLSGRFRGKRVVFLKQMASGTLLVTGPYKVNGVPLRRVNQAYVIATSTKLDVSKVDVSAIDDAYFARAPEAKKTAEDAFFAQASKESVVSDQKKKDQDVVDASILAGLSKDKLLKAYLNAKFSLTKKDRPHEMVF 185
BLAST of mRNA_E-siliculosus-1a_F_contig1292.1784.1 vs. uniprot
Match: A0A7S1U5W8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5W8_9STRA) HSP 1 Score: 197 bits (501), Expect = 9.280e-61 Identity = 105/174 (60.34%), Postives = 134/174 (77.01%), Query Frame = 1
Query: 4 QAKAPKWYSGDDVK-PKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 519
+ + P Y DDVK P + + PTKLR++ITPGT+LI+L+GRFRGKRVVFLKQL SGTLLVTGPY VNGVP+RRVNQAYVIATS+ VD++ V++P DD +F RE+ +KTDE+QFF ++ VS RK QK VDAG+LAA+ P+L+AYL A+FSL+ GD+PH+M F
Sbjct: 67 EGEGPAMYPADDVKKPLMRFRVNKPTKLRASITPGTVLIMLAGRFRGKRVVFLKQLSSGTLLVTGPYKVNGVPLRRVNQAYVIATSVVVDLAGVSLPDIDDEFFAREKKESKTDEEQFFSNEPTATVVSQARKDAQKAVDAGILAAVKKVPLLQAYLGARFSLRNGDKPHKMKF 240
BLAST of mRNA_E-siliculosus-1a_F_contig1292.1784.1 vs. uniprot
Match: K3WPZ3_GLOUD (60S ribosomal protein L6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPZ3_GLOUD) HSP 1 Score: 190 bits (482), Expect = 6.990e-58 Identity = 108/180 (60.00%), Postives = 131/180 (72.78%), Query Frame = 1
Query: 7 AKAPKWYSGDDVKPKAAPQK-----HNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATK-TDEDQFFEQGAKSST--VSDKRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 519
+KA KWY D + K A K KLR +ITPGT+LILLSGRFRGKRVVFLKQLPSGTLLVTGPY VNGVP+RRVNQAYVIATS V++S VT+P DDSYF +E+ + K + E+QFF Q +S +SDKRK DQK +DA ++ + + P L+AYLNAKF+L K DR HE+ F
Sbjct: 61 SKAAKWYPADYIPKKLASAKTARNSKKTAKLRKSITPGTVLILLSGRFRGKRVVFLKQLPSGTLLVTGPYKVNGVPLRRVNQAYVIATSTKVELSDVTLPDIDDSYFVKEKPSKKDSKEEQFFAQSGAASAPAISDKRKQDQKAIDAILMKKLKDEPYLQAYLNAKFTLTKNDRVHELQF 240
BLAST of mRNA_E-siliculosus-1a_F_contig1292.1784.1 vs. uniprot
Match: A0A1Y1Y938_9FUNG (Ribosomal_L6e_N domain-containing protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y938_9FUNG) HSP 1 Score: 187 bits (476), Expect = 5.330e-57 Identity = 102/174 (58.62%), Postives = 131/174 (75.29%), Query Frame = 1
Query: 10 KAPKWYSGDDV-KPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAA-DDSYFTREEVA-TKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 519
KA +WY +DV +PKA+ + PTKLR+TITPGT+L+LL+GRFRGKRVVFLKQL SG LLVTGPY VNGVP+RRVNQAYV+ATS VD+S V + A DD+YF +E+ A K E++FF + K + + R ADQK+VD +LAA++ P L++YLNA F+L+KG PH M F
Sbjct: 65 KASRWYPAEDVAQPKASRKVAKPTKLRATITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVLATSTKVDLSNVNVDAKFDDAYFKKEKAAKAKGTEEEFFGEEQKKKVIPESRSADQKSVDKEILAAVSQVPHLRSYLNASFTLRKGQAPHSMKF 238
BLAST of mRNA_E-siliculosus-1a_F_contig1292.1784.1 vs. uniprot
Match: A0A6G0WU17_9STRA (60S ribosomal protein L6 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU17_9STRA) HSP 1 Score: 187 bits (474), Expect = 1.070e-56 Identity = 104/173 (60.12%), Postives = 126/173 (72.83%), Query Frame = 1
Query: 19 KWYSGDDV-KP----KAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMT-NPMLKAYLNAKFSLKKGDRPHEMIF 519
KWY D V KP K A TKLR++ITPGT+LILLSGRFRGKRVVFLKQL SGTLLVTGPY VNGVP+RRVNQA+VIATS VD+S V +P +D+YF +E+ K DE+ FF Q + ++ VS++RK DQK VDA ++ + P+LK YLNAKFSL K R HE+ F
Sbjct: 66 KWYPTDYVPKPLPSAKTARNSVKTTKLRNSITPGTVLILLSGRFRGKRVVFLKQLASGTLLVTGPYKVNGVPLRRVNQAFVIATSTKVDISDVKLPEINDAYFAKEKTHAKKDEEAFFAQSSTAAIVSEQRKKDQKEVDAALIKKINATPLLKQYLNAKFSLSKTQRVHELKF 238
BLAST of mRNA_E-siliculosus-1a_F_contig1292.1784.1 vs. uniprot
Match: G7J9R6_MEDTR (60S ribosomal L6-like protein n=6 Tax=Trifolieae TaxID=163742 RepID=G7J9R6_MEDTR) HSP 1 Score: 186 bits (472), Expect = 1.850e-56 Identity = 105/178 (58.99%), Postives = 130/178 (73.03%), Query Frame = 1
Query: 1 PQAKAPKWYSGDDVKPKAAPQKHNP--TKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE-EVATKTDEDQFFEQGAKSSTV-SDKRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 519
P K PK+Y DDVK K KH P TKLR++ITPGT+LILL+GRF+GKRVVFLKQLPSG LLVTGP+ +NGVP+RRVNQAYVI TS VD+S V + DD YF++E + TK E +FFE + V ++K DQKTVDAG+L A+ + P LK YL A+FSLK G +PHE++F
Sbjct: 57 PVEKPPKFYPADDVK-KPLRNKHRPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESQKKTKKGESEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHELVF 233
BLAST of mRNA_E-siliculosus-1a_F_contig1292.1784.1 vs. uniprot
Match: A0A1Y1Y1J0_9FUNG (60S ribosomal protein L6 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y1J0_9FUNG) HSP 1 Score: 186 bits (471), Expect = 3.040e-56 Identity = 103/175 (58.86%), Postives = 133/175 (76.00%), Query Frame = 1
Query: 10 KAPKWYSGDDV-KPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAA-DDSYFTREEVA--TKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 519
KA +WY +DV +PK + + PTKLR++ITPGT+L+LL+GRFRGKRVVFLKQL SG LLVTGPY VNGVP+RRVNQAYVIATS VD+S V + DD+YF +E+ A +KT+E+ FF++ T+S+ R ADQK+VD +LAA++ P L+AYLNA F+L+KG PH M F
Sbjct: 65 KASRWYPAEDVAQPKQSRKTAKPTKLRTSITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVIATSTKVDLSNVKVDEKFDDAYFKKEKTAKASKTEEE-FFDEKQPKKTISESRSADQKSVDKEILAAVSGVPHLRAYLNASFTLRKGQAPHAMKF 238
BLAST of mRNA_E-siliculosus-1a_F_contig1292.1784.1 vs. uniprot
Match: K3YVL3_SETIT (60S ribosomal protein L6 n=13 Tax=Panicoideae TaxID=147369 RepID=K3YVL3_SETIT) HSP 1 Score: 184 bits (468), Expect = 4.860e-56 Identity = 101/175 (57.71%), Postives = 128/175 (73.14%), Query Frame = 1
Query: 7 AKAPKWYSGDDVKPKA-APQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE--EVATKTDEDQFFEQGAKSSTVSDKRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 519
AK PK+Y DDVKP+A + +K PTKLRSTITPGT+LILL+GRF GKRVVFLKQL SG LL++GP+ +NGVP+RRVNQ YVIATS VD+S V + DD YF RE + KT+ + F + S ++ D +K DQK VDA ++ A+ P LK YL A+FSL+ GD+PHEM+F
Sbjct: 45 AKEPKFYPADDVKPRAPSTRKPKPTKLRSTITPGTVLILLAGRFMGKRVVFLKQLKSGLLLISGPFKINGVPIRRVNQTYVIATSTKVDISGVDVSKFDDKYFAREKKQKVKKTEGELFETEKEASKSLPDFKKDDQKAVDAALIKAIEAVPELKTYLGARFSLRDGDKPHEMVF 219
BLAST of mRNA_E-siliculosus-1a_F_contig1292.1784.1 vs. uniprot
Match: B8CBR7_THAPS (60S ribosomal protein L6 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBR7_THAPS) HSP 1 Score: 183 bits (464), Expect = 5.450e-56 Identity = 101/174 (58.05%), Postives = 129/174 (74.14%), Query Frame = 1
Query: 10 KAPKWYSGDDV-KPK-AAPQKHNPTKLRSTITPGTILILLSGRFRGKRVVFLKQLPSGTLLVTGPYSVNGVPMRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFF-EQGAKSSTVSDKRKADQKTVDAGVLAAM-TNPMLKAYLNAKFSLKKGDRPHEMIF 519
K+ ++Y DD+ +PK + +KHN K+R+++TPGT+ ILLSGRFRGKRVV LK L SG LLVTGPY +NGVP+RRVNQAYVIATS VDVS + DD+YF R + + E++FF AK + VSD+RKADQK VDA +L A+ + P++K YL + FSLKK DRPHEMIF
Sbjct: 5 KSARYYPADDIPRPKHSRAKKHNAPKVRASLTPGTVCILLSGRFRGKRVVCLKALESGLLLVTGPYKINGVPLRRVNQAYVIATSTKVDVSGADVSKIDDAYFARVKSDSAEGEEEFFANDAAKPAVVSDQRKADQKKVDAAILKAVESTPLMKNYLGSNFSLKKHDRPHEMIF 178 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1292.1784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1292.1784.1 >prot_E-siliculosus-1a_F_contig1292.1784.1 ID=prot_E-siliculosus-1a_F_contig1292.1784.1|Name=mRNA_E-siliculosus-1a_F_contig1292.1784.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=174bp PQAKAPKWYSGDDVKPKAAPQKHNPTKLRSTITPGTILILLSGRFRGKRVback to top mRNA from alignment at E-siliculosus-1a_F_contig1292:30325..32997+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1292.1784.1 ID=mRNA_E-siliculosus-1a_F_contig1292.1784.1|Name=mRNA_E-siliculosus-1a_F_contig1292.1784.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2673bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1292:30325..32997+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1292:30325..32997+ >mRNA_E-siliculosus-1a_F_contig1292.1784.1 ID=mRNA_E-siliculosus-1a_F_contig1292.1784.1|Name=mRNA_E-siliculosus-1a_F_contig1292.1784.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1292:30325..32997+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |