mRNA_E-siliculosus-1a_F_contig12910.1779.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: D7FJ33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ33_ECTSI) HSP 1 Score: 163 bits (412), Expect = 5.510e-49 Identity = 85/96 (88.54%), Postives = 87/96 (90.62%), Query Frame = 1
Query: 1 MASSSHDFDDGGSDDASSLQADPRTEIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGR 288
MASSSHDFDDGG DDAS LQ DPRTEIKSLIRNVKTP +FAFGSSLLAPSPKLTVQGLG ISLPLS EDVG+LRGAAERAPFGHGAET VDE V R
Sbjct: 1 MASSSHDFDDGGGDDASLLQVDPRTEIKSLIRNVKTPESFAFGSSLLAPSPKLTVQGLGSISLPLSNEDVGTLRGAAERAPFGHGAETKVDESVRR 96
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: D7FJ30_ECTSI (Catalase is an enzyme, present in all aerobic cells, that decomposes hydrogen peroxide to molecular n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ30_ECTSI) HSP 1 Score: 146 bits (369), Expect = 6.170e-41 Identity = 77/96 (80.21%), Postives = 83/96 (86.46%), Query Frame = 1
Query: 1 MASSSHDFDDGGSDDASSLQADPRTEIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGR 288
MASSSH +DDGGSDDAS +Q +PR E+K IRNV+TPGTFAFGSSLLAPSPKLTVQGLG ISLPLS E VG+LRGAAERAPFGHG ET VDE V R
Sbjct: 1 MASSSHGYDDGGSDDAS-VQLNPRQEVKRFIRNVETPGTFAFGSSLLAPSPKLTVQGLGSISLPLSNEHVGALRGAAERAPFGHGTETKVDESVRR 95
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: D7FGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP4_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 9.360e-23 Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 3
Query: 276 VRRAWQIDGSLLGLSNEFAQAVGKKYALHAAEKLGLRAKALGVEARLYKLVM 431
+RRAWQIDGSLLGLSNE AQAVGKKYALHAAE+LGLR KALGVEARLYKLV+
Sbjct: 11 LRRAWQIDGSLLGLSNEVAQAVGKKYALHAAEELGLRTKALGVEARLYKLVI 62
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: A0A835YA66_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YA66_9CHLO) HSP 1 Score: 65.1 bits (157), Expect = 1.000e-9 Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 76 EIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGRGR 294
+++ + V+T G+FA L A P+L VQGLG IS+PLSR+D SL + APFG G ET D+ V RG+
Sbjct: 11 QLQEALDGVQTCGSFAATGLLAAKQPRLAVQGLGTISVPLSRKDAASLLRVGKIAPFGFGNETVQDQSVRRGK 83
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI00192C3A8B (2OG-Fe(II) oxygenase n=1 Tax=Thiothrix subterranea TaxID=2735563 RepID=UPI00192C3A8B) HSP 1 Score: 58.9 bits (141), Expect = 2.320e-7 Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query: 64 DPRTEIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGRGRSTAP 306
D T++ S++ V+ PG F ++ P+L V+G+G I+LPL + + +L AAE+AP+G G ET VD V + AP
Sbjct: 3 DLNTQLVSILSRVRRPGNFYASGNVDFALPRLEVEGVGNIALPLLPQQISALVQAAEQAPYGKGEETLVDTSVRKTWQIAP 83
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI001B7FE1B8 (2OG-Fe(II) oxygenase n=1 Tax=Azohydromonas australica TaxID=364039 RepID=UPI001B7FE1B8) HSP 1 Score: 58.5 bits (140), Expect = 3.150e-7 Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 76 EIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGR 288
E+ +L+ V+TPG F + P+LTVQG+G ++LPL L A+RAP+G G ET VD V R
Sbjct: 6 ELPALLSTVRTPGDFYTAGVIELSLPRLTVQGVGAVALPLLPVQAEQLIAIADRAPYGRGTETIVDTSVRR 76
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI001BE8BF34 (2OG-Fe(II) oxygenase n=1 Tax=Variovorax paradoxus TaxID=34073 RepID=UPI001BE8BF34) HSP 1 Score: 57.4 bits (137), Expect = 7.950e-7 Identity = 29/71 (40.85%), Postives = 40/71 (56.34%), Query Frame = 1
Query: 76 EIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGR 288
++ ++ +TPG + + P P+L V G+G I+LPL G L G AERAP+G G ET VD V R
Sbjct: 7 DLAMVLSTARTPGEYYATGACAIPLPRLEVNGVGPIALPLLPTQAGQLIGVAERAPYGRGEETLVDTEVRR 77
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI001AED3E03 (2OG-Fe(II) oxygenase n=1 Tax=Thiothrix litoralis TaxID=2891210 RepID=UPI001AED3E03) HSP 1 Score: 56.6 bits (135), Expect = 1.480e-6 Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 64 DPRTEIKSLIRNVKTPGTF-AFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGRGRSTAP 306
D T++ S++ V+ PG+F A G + LA P+L V+G+G I+LPL + + L AE+AP+G G ET VD V + AP
Sbjct: 3 DLNTQLVSILNRVQRPGSFYATGKADLA-MPRLEVEGVGNIALPLLPQQISPLVQVAEQAPYGKGEETLVDTTVRKTWQIAP 83
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI001D04B3FA (uncharacterized protein n=2 Tax=Bacidia gigantensis TaxID=2732470 RepID=UPI001D04B3FA) HSP 1 Score: 56.6 bits (135), Expect = 1.500e-6 Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 22 FDDGGSDDASSLQADPRTEIKSLIR----NVKTPGTFA-FGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECV 282
F D SD+ S + PR +K +R NV + G+FA FG +P +++ LG I LPLS ED ++ A+ +APFG G +T VDE +
Sbjct: 4 FYDSSSDEKSDDERTPRDIVKDNLRYCINNVHSTGSFATFGVVERFANPGISIDPLGLIRLPLSEEDAKAIVRASNKAPFGKGNKTLVDESI 95
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Match: UPI00022C768F (hypothetical protein n=1 Tax=Thiorhodovibrio sp. 970 TaxID=631362 RepID=UPI00022C768F) HSP 1 Score: 53.5 bits (127), Expect = 1.670e-6 Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 76 EIKSLIRNVKTPGTFAFGSSLLAPSPKLTVQGLGRISLPLSREDVGSLRGAAERAPFGHGAETTVDECVGR 288
++ +L+ + PG F +L P+L V+G+G I+LPL L G AE+AP+G G+ET VD V R
Sbjct: 7 QLAALLERIDRPGDFYATGTLDMHPPRLRVEGIGTIALPLLPVQAQQLIGVAEQAPYGRGSETLVDTEVRR 77 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12910.1779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig12910.1779.1 >prot_E-siliculosus-1a_F_contig12910.1779.1 ID=prot_E-siliculosus-1a_F_contig12910.1779.1|Name=mRNA_E-siliculosus-1a_F_contig12910.1779.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=128bp MASSSHDFDDGGSDDASSLQADPRTEIKSLIRNVKTPGTFAFGSSLLAPSback to top mRNA from alignment at E-siliculosus-1a_F_contig12910:288..718- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig12910.1779.1 ID=mRNA_E-siliculosus-1a_F_contig12910.1779.1|Name=mRNA_E-siliculosus-1a_F_contig12910.1779.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=431bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12910:288..718- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12910:288..718- >mRNA_E-siliculosus-1a_F_contig12910.1779.1 ID=mRNA_E-siliculosus-1a_F_contig12910.1779.1|Name=mRNA_E-siliculosus-1a_F_contig12910.1779.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=768bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12910:288..718- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |