mRNA_E-siliculosus-1a_F_contig129.1769.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig129.1769.1
Unique NamemRNA_E-siliculosus-1a_F_contig129.1769.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig129.1769.1 vs. uniprot
Match: D7G939_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G939_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 3.990e-74
Identity = 126/136 (92.65%), Postives = 128/136 (94.12%), Query Frame = -1 
Query:   55 GLTTMLGSPARSPPPLSHRHRTVFDSAAQQTGRYDYGGRDATGRDGGRAAGAAAWIETVAGCTGPEDGFVYGGDAGSVLTFVRKGREDGGDSGVXXXXXXXXXXXXAGHPSLPQVLRWFWNLKHERGVLAYEVAEL 462
            GLTT+LGSPARSPPPLSHRHRTVFDSAAQQTGRYDYGGRDATGRD G AAGAAAWIETVAGCTGPEDGFVYGG+AGSVLTFVRKGREDGGDSGV XXXXXX     AGHPSLPQVLRWFWNLKHERGVLAYEVAEL
Sbjct:   33 GLTTILGSPARSPPPLSHRHRTVFDSAAQQTGRYDYGGRDATGRDAGGAAGAAAWIETVAGCTGPEDGFVYGGEAGSVLTFVRKGREDGGDSGVAXXXXXX-----AGHPSLPQVLRWFWNLKHERGVLAYEVAEL 163
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BLAST of mRNA_E-siliculosus-1a_F_contig129.1769.1 vs. uniprot
Match: A0A6H5JG89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG89_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 2.540e-69
Identity = 116/136 (85.29%), Postives = 118/136 (86.76%), Query Frame = -1 
Query:   55 GLTTMLGSPARSPPPLSHRHRTVFDSAAQQTGRYDYGGRDATGRDGGRAAGAAAWIETVAGCTGPEDGFVYGGDAGSVLTFVRKGREDGGDSGVXXXXXXXXXXXXAGHPSLPQVLRWFWNLKHERGVLAYEVAEL 462
            GLTTMLGS A+SP PLSHRHRTVFDSAAQQTGRYDYGGRDATGR  G AAG AAWIETVAGCTGPEDGFVYGG+AGSVLTFVRKGREDGGDSGV            AGHPSLPQVLRWFWNLKHERGVLAYEVAEL
Sbjct:  128 GLTTMLGSSAKSPRPLSHRHRTVFDSAAQQTGRYDYGGRDATGRGAGGAAGTAAWIETVAGCTGPEDGFVYGGEAGSVLTFVRKGREDGGDSGVAAAAAA------AGHPSLPQVLRWFWNLKHERGVLAYEVAEL 257
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BLAST of mRNA_E-siliculosus-1a_F_contig129.1769.1 vs. uniprot
Match: A0A6H5JHT3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT3_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.650e-28
Identity = 67/133 (50.38%), Postives = 78/133 (58.65%), Query Frame = -1 
Query:   55 MLGSPARSPPPLSHRHRTVFDSAAQQTGRYDYGGRDATGRDGGRAAGAA-AWIETVAGCTGPEDGFVYGGDAGSVLTFVRKGREDGGDSGVXXXXXXXXXXXXAGHPSLPQVLRWFWNLKHERGVLAYEVAEL 450
            MLGS A +PPPLS RHRT FDSAAQQ GRYD GG DATG D G AAG+A AWIET   C+G  +      +  ++L  +                            S PQVLRWFW+L+HERGVLAY+VAEL
Sbjct:    1 MLGSSANTPPPLSRRHRTAFDSAAQQAGRYDGGGDDATGHDAGGAAGSASAWIET---CSGVRE------ETAAMLMLLDT-------------------------LSCPQVLRWFWSLEHERGVLAYDVAEL 99
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig129.1769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G939_ECTSI3.990e-7492.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG89_9PHAE2.540e-6985.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHT3_9PHAE1.650e-2850.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig129contigE-siliculosus-1a_F_contig129:59241..59800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size117
Model size462
Exons2
Ec32 orthologEc-02_001320.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig129.1769.1prot_E-siliculosus-1a_F_contig129.1769.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig129 59241..59455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927810.8241515-CDS-E-siliculosus-1a_F_contig129:59240..592971622927810.8241515-CDS-E-siliculosus-1a_F_contig129:59240..59297Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig129 59241..59297 +
1696318689.4922447-CDS-E-siliculosus-1a_F_contig129:59240..592971696318689.4922447-CDS-E-siliculosus-1a_F_contig129:59240..59297Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig129 59241..59297 +
1622927810.8374383-CDS-E-siliculosus-1a_F_contig129:59395..594551622927810.8374383-CDS-E-siliculosus-1a_F_contig129:59395..59455Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig129 59396..59455 +
1696318689.5006032-CDS-E-siliculosus-1a_F_contig129:59395..594551696318689.5006032-CDS-E-siliculosus-1a_F_contig129:59395..59455Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig129 59396..59455 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927810.8486357-UTR-E-siliculosus-1a_F_contig129:59455..598001622927810.8486357-UTR-E-siliculosus-1a_F_contig129:59455..59800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig129 59456..59800 +
1696318689.5105157-UTR-E-siliculosus-1a_F_contig129:59455..598001696318689.5105157-UTR-E-siliculosus-1a_F_contig129:59455..59800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig129 59456..59800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig129.1769.1

>prot_E-siliculosus-1a_F_contig129.1769.1 ID=prot_E-siliculosus-1a_F_contig129.1769.1|Name=mRNA_E-siliculosus-1a_F_contig129.1769.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=39bp
MTVVSSSPTQVNPTEPTNQLGDFVRQHPSLVLQVPEPP*
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mRNA from alignment at E-siliculosus-1a_F_contig129:59241..59800+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig129.1769.1 ID=mRNA_E-siliculosus-1a_F_contig129.1769.1|Name=mRNA_E-siliculosus-1a_F_contig129.1769.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=560bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig129:59241..59800+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAGTAGTATCGTCTTCACCAACGCAAGTCAACCCGACCGAGCCCAC
CAATCAGGTAACGAGCGAGGCAGTGCTCCATAGTCGCTCACCAATATTCG
ACGCGAACACCACTTCCCACCCGGTCTCCTGCCCGACATCTCGTCGCTCG
TTCAGCTCGGCGACTTCGTACGCCAACACCCCTCGCTCGTGCTTCAAGTT
CCAGAACCACCTTAGCACCTGGGGCAGGGAAGGGTGTCCGGCAGAAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCTACGCCGCTGTCGCCGCCGTCT
TCTCTCCCCTTCCGCACGAAAGTCAGCACGCTACCGGCATCGCCGCCGTA
GACGAACCCGTCCTCGGGGCCCGTGCACCCCGCTACGGTCTCTATCCATG
CCGCCGCCCCTGCGGCGCGCCCACCATCACGGCCGGTAGCGTCCCTACCG
CCGTAGTCATAGCGGCCAGTCTGTTGGGCAGCACTATCAAACACGGTTCG
ATGCCGGTGGGAGAGCGGCGGCGGGCTCCTGGCCGGCGAGCCGAGCATGG
TGGTGAGCCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig129:59241..59800+

>mRNA_E-siliculosus-1a_F_contig129.1769.1 ID=mRNA_E-siliculosus-1a_F_contig129.1769.1|Name=mRNA_E-siliculosus-1a_F_contig129.1769.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig129:59241..59800+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACAGTAGTATCGTCTTCACCAACGCAAGTCAACCCGACCGAGCCCAC
CAATCAGATGACAGTAGTATCGTCTTCACCAACGCAAGTCAACCCGACCG
AGCCCACCAATCAGCTCGGCGACTTCGTACGCCAACACCCCTCGCTCGTG
CTTCAAGTTCCAGAACCACCTTAGCTCGGCGACTTCGTACGCCAACACCC
CTCGCTCGTGCTTCAAGTTCCAGAACCACCTTAG
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