mRNA_E-siliculosus-1a_F_contig1288.1762.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1288.1762.1
Unique NamemRNA_E-siliculosus-1a_F_contig1288.1762.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1288.1762.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 7.240e-76
Identity = 160/189 (84.66%), Postives = 161/189 (85.19%), Query Frame = -1 
Query:   37 VGSMSRTNSNSRLANGRGSGGAQQSEHDRPGGRETTSRHGG-----------------GGDAGGVRFEGPARAGGGQRTTAESSRSGGGAGSRGSKRGRSAEPERSGGRDGGGYDGPGSAEGDPSQAFDSKRMRQPDQAMMPQPEGVGGRRGSAKSSVDRWGRGYGXXXXXXXXXTWEREGPAAPNEAN 552
            VGSMS       LANGRGSGGAQQSEHDRPGGRETTSRHGG                 GGDAGGVRFEGPARAGGGQRTTAESSRSGGGAGSRGSKRGRSAEPERSGGRDGGGYDGPGSAEGDPSQAFDSKRMRQPDQAMMP PEG GGRRGSAKSS DRWGRGYGXXXXXXXXX WEREGPAAPN+AN
Sbjct: 2001 VGSMSXXXXXXXLANGRGSGGAQQSEHDRPGGRETTSRHGGHARRVDEDARDAPSGGGGGDAGGVRFEGPARAGGGQRTTAESSRSGGGAGSRGSKRGRSAEPERSGGRDGGGYDGPGSAEGDPSQAFDSKRMRQPDQAMMPHPEGGGGRRGSAKSSADRWGRGYGXXXXXXXXXXWEREGPAAPNDAN 2189
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD24_ECTSI7.240e-7684.66THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1288contigE-siliculosus-1a_F_contig1288:30653..31213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size561
Model size562
Exons1
Hectar predicted targeting categorychloroplast
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927808.0351727-CDS-E-siliculosus-1a_F_contig1288:30652..312131622927808.0351727-CDS-E-siliculosus-1a_F_contig1288:30652..31213Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1288 30653..31213 +
1696318688.5404994-CDS-E-siliculosus-1a_F_contig1288:30652..312131696318688.5404994-CDS-E-siliculosus-1a_F_contig1288:30652..31213Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1288 30653..31213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1288.1762.1prot_E-siliculosus-1a_F_contig1288.1762.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1288 30653..31213 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1288.1762.1

>prot_E-siliculosus-1a_F_contig1288.1762.1 ID=prot_E-siliculosus-1a_F_contig1288.1762.1|Name=mRNA_E-siliculosus-1a_F_contig1288.1762.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=187bp
MPKVIVIASAAVVGLIGCGGPLPLPCSTAAAAAAAAIPPTPAIHRRFRGA
PSPADALGLRHHRLVRLPHALAVECLARVPLGAARTVVPASVSAAASLRL
GAASPLASAGAGTTTAAARFGRRPLPPPRTRGAFESHPPGIAAATVTACC
FTPAGAIVLALLSPAAAAAVGQAAVAIGSRHTADDRT
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mRNA from alignment at E-siliculosus-1a_F_contig1288:30653..31213+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1288.1762.1 ID=mRNA_E-siliculosus-1a_F_contig1288.1762.1|Name=mRNA_E-siliculosus-1a_F_contig1288.1762.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=561bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1288:30653..31213+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTAAGGTCATCGTGATAGCGTCCGCTGCTGTTGTTGGCCTCATTGG
GTGCGGCGGGCCCCTCCCGCTCCCATGTTCCACCGCCGCTGCCGCCGCCG
CCGCCGCCATACCCCCGACCCCAGCGATCCACCGAAGATTTCGCGGAGCC
CCTTCTCCCGCCGACGCCCTCGGGCTGCGGCATCATCGCCTGGTCCGGCT
GCCGCATGCGCTTGCTGTCGAATGCCTGGCTAGGGTCCCCCTCGGCGCTG
CCCGGACCGTCGTACCCGCCTCCGTCTCTGCCGCCGCTTCGCTCAGGCTC
GGCGCTGCGTCCCCTCTTGCTTCCGCGGGAGCCGGCACCACCACCGCTGC
GGCTAGATTCGGCCGTCGTCCGTTGCCCCCCCCCCGCACGCGCGGGGCCT
TCGAATCGCACCCCCCCGGCATCGCCGCCGCCACCGTGACGGCTTGTTGT
TTCACGCCCGCCGGGGCGATCGTGCTCGCTCTGTTGAGCCCCGCCGCTGC
CGCGGCCGTTGGCCAAGCGGCTGTTGCTATTGGTTCGCGACATACTGCCG
ACGACCGCACC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1288:30653..31213+

>mRNA_E-siliculosus-1a_F_contig1288.1762.1 ID=mRNA_E-siliculosus-1a_F_contig1288.1762.1|Name=mRNA_E-siliculosus-1a_F_contig1288.1762.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1122bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1288:30653..31213+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTAAGGTCATCGTGATAGCGTCCGCTGCTGTTGTTGGCCTCATTGG
GTGCGGCGGGCCCCTCCCGCTCCCATGTTCCACCGCCGCTGCCGCCGCCG
CCGCCGCCATACCCCCGACCCCAGCGATCCACCGAAGATTTCGCGGAGCC
CCTTCTCCCGCCGACGCCCTCGGGCTGCGGCATCATCGCCTGGTCCGGCT
GCCGCATGCGCTTGCTGTCGAATGCCTGGCTAGGGTCCCCCTCGGCGCTG
CCCGGACCGTCGTACCCGCCTCCGTCTCTGCCGCCGCTTCGCTCAGGCTC
GGCGCTGCGTCCCCTCTTGCTTCCGCGGGAGCCGGCACCACCACCGCTGC
GGCTAGATTCGGCCGTCGTCCGTTGCCCCCCCCCCGCACGCGCGGGGCCT
TCGAATCGCACCCCCCCGGCATCGCCGCCGCCACCGTGACGGCTTGTTGT
TTCACGCCCGCCGGGGCGATCGTGCTCGCTCTGTTGAGCCCCGCCGCTGC
CGCGGCCGTTGGCCAAGCGGCTGTTGCTATTGGTTCGCGACATACTGCCG
ACGACCGCACCATGCCTAAGGTCATCGTGATAGCGTCCGCTGCTGTTGTT
GGCCTCATTGGGTGCGGCGGGCCCCTCCCGCTCCCATGTTCCACCGCCGC
TGCCGCCGCCGCCGCCGCCATACCCCCGACCCCAGCGATCCACCGAAGAT
TTCGCGGAGCCCCTTCTCCCGCCGACGCCCTCGGGCTGCGGCATCATCGC
CTGGTCCGGCTGCCGCATGCGCTTGCTGTCGAATGCCTGGCTAGGGTCCC
CCTCGGCGCTGCCCGGACCGTCGTACCCGCCTCCGTCTCTGCCGCCGCTT
CGCTCAGGCTCGGCGCTGCGTCCCCTCTTGCTTCCGCGGGAGCCGGCACC
ACCACCGCTGCGGCTAGATTCGGCCGTCGTCCGTTGCCCCCCCCCCGCAC
GCGCGGGGCCTTCGAATCGCACCCCCCCGGCATCGCCGCCGCCACCGTGA
CGGCTTGTTGTTTCACGCCCGCCGGGGCGATCGTGCTCGCTCTGTTGAGC
CCCGCCGCTGCCGCGGCCGTTGGCCAAGCGGCTGTTGCTATTGGTTCGCG
ACATACTGCCGACGACCGCACC
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