mRNA_E-siliculosus-1a_F_contig1288.1760.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1288.1760.1
Unique NamemRNA_E-siliculosus-1a_F_contig1288.1760.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1760.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 491 bits (1265), Expect = 3.870e-166
Identity = 259/297 (87.21%), Postives = 268/297 (90.24%), Query Frame = 3 
Query:  765 TIAKAFLDTDTSLVDATDHRGFTALHHAALIERHARDKGDAVRVLVAAGADVHAKTTDDHLRCAPLHILVCGRIPSTGTIRALLEGGADVNVRDSEDRTPLHEACIWSSVAAVDLLLRWGAHEKLTDDGDETPADMIGTSDGVGSDDDDIEAD-QRIHQMLPRAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSTSSXXXXXXXXXXXXXNSTKLARFSGEDPGGGERETEDQMMVNLRGLVTRLVGLEADGLFRLVVGFLKRGRNGVLFTSLPQLSDSSRQALATKVVLW 1652
            TI KAFLDTDTSLV+ATDH G+TALHHAALIE H RDKGDAVRVL+AAGADVHAKTTDDHLRCAPLHI VCGR+PSTGTIRALLEGGADVNVRD EDRTPLHEAC +SSVAAV+LLLRWGA EKLTDDGD TPADMIGTS  VGSD  DIEAD QRIHQML RAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGS+SS             NSTKLARFSGED GGGERETEDQMMV+LRGLVTRLVGLEADGLFRLVVGFLKRGRNGVLFTSLPQLSDSSRQALATK+VLW
Sbjct:  257 TIVKAFLDTDTSLVNATDHYGYTALHHAALIEVHGRDKGDAVRVLLAAGADVHAKTTDDHLRCAPLHIAVCGRVPSTGTIRALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSGDVGSDHGDIEADGQRIHQMLARAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSSSSSNG----------NSTKLARFSGEDSGGGERETEDQMMVDLRGLVTRLVGLEADGLFRLVVGFLKRGRNGVLFTSLPQLSDSSRQALATKLVLW 543
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1760.1 vs. uniprot
Match: A0A6H5L812_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L812_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 8.410e-84
Identity = 184/332 (55.42%), Postives = 217/332 (65.36%), Query Frame = 3 
Query:  570 CLAELLLGGADKDVSDMGSKTPLFKAAENNHLGAVEELLAAGATRGRTHNXXXXXLEIAANRGHATIAKAFLDTDTSLVDATDHRGFTALHHAALIERHARDKGDAVRVLVAAGADVHAKTTDDHLRCAPLHILVCGRIPSTGTIRALLEGGADVNVRDSEDRTPLHEACIWSSVAAVDLLLRWGAHEKLTDDGDETPADMIGTSDGVGSDDDDIEAD-QRIHQMLPRAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSTSSXXXXXXXXXXXXXNSTKLARFSGEDPGGGERETEDQMMVNLRGLVTRLVGLEADGLFRLVVGFL 1562
            C++ELLLG                    N+HL AV+ELLAAGA      N     LEIAANRG A + KA LD D+  VDATD  G+ ALH+AA I+   RD GDAVRVL+ AGADV AK T D    + L++ V  RI S GTIRALLEGGA++N R   D+TPLH AC  SS   V+LLLRWGA +KLT +  +TPA ++        DD+++EAD QRI +ML R PA RSWRRR WLVLSRSCPTRV+IAN    GSS      XXXXXXXXXXX  NS K+A+ SGE     + ET D MMV+LR LV RL+ LEADG+FRLVVGFL
Sbjct:  174 CISELLLGA-------------------NSHLEAVQELLAAGANYSLRTNGSRSPLEIAANRGQADVVKALLDKDSGEVDATDGGGWAALHYAASIDGPVRDNGDAVRVLLRAGADVSAKGTKDPCDTS-LYLAVNRRIASDGTIRALLEGGANINARIGGDQTPLHVACSRSSAVGVELLLRWGADDKLTTNVGQTPAHVVRALQQDDLDDEELEADNQRIRRMLARDPAARSWRRRGWLVLSRSCPTRVQIAN----GSSX-----XXXXXXXXXXXNGNSAKVAKVSGESSSRDDEETADDMMVDLRDLVGRLIALEADGVFRLVVGFL 476
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1760.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 9.960e-81
Identity = 159/286 (55.59%), Postives = 193/286 (67.48%), Query Frame = 3 
Query:  711 THNXXXXXLEIAANRGHATIAKAFLDTDTSLVDATDHRGFTALHHAALIERHARDKGDAVRVLVAAGADVHAKTTDDHLRCA-PLHILVCGRIPSTGTIRALLEGGADVNVRDSEDRTPLHEACIWSSVAAVDLLLRWGAHEKLTDDGDETPADMIGTSDGVGSDDDDIEAD-QRIHQMLPRAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSTSSXXXXXXXXXXXXXNSTKLARFSGEDPGGGERETEDQMMVNLRGLVTRLVGLEADGLFRLVVGFL 1562
            T+      LEIAA RGHA + KA LD  +S VD  +  G+ ALH+ A  +   RDKGDAVRVL+ AGADV+ K T+D   CA PLH+ V   + STGTI ALLEGGA++N R + D TPLH AC     + V+LLLRWGA EKL ++  +TPAD++G  +    DD++ EAD QRIH+ML RAPADRSWRRR WLVLSRSCPTRV IAN + S SS+   +              NS K+AR SG+     + ETEDQMMV+LR LV RLVGLEA+GLFRLVVGFL
Sbjct:  241 TNGSRCSPLEIAAGRGHADVLKALLDKRSSEVDTANDLGWAALHYVASFDETVRDKGDAVRVLLGAGADVNVKGTNDS--CATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRING-------------NSAKVARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLVVGFL 511
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1760.1 vs. uniprot
Match: A0A6H5JXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF0_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.200e-67
Identity = 139/254 (54.72%), Postives = 167/254 (65.75%), Query Frame = 3 
Query:  804 VDATDHRGFTALHHAALIERHARDKGDAVRVLVAAGADVHAKTTDDHLRCAPLHILVCGRIPSTGTIRALLEGGADVNVRDSEDRTPLHEACIWSSVAAVDLLLRWGAHEKLTDDGDETPADMIGTSDGVGSDDDDIEAD-QRIHQMLPRAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSTSSXXXXXXXXXXXXXNSTKLARFSGEDPGGGERETEDQMMVNLRGLVTRLVGLEADGLFRLVVGFL 1562
            V+AT+  G  ALH+AA +     DKGDAVRVL+ AG DV+  TT D     PLH+ V GRI S GTIRALLEG ADV+ R   D+TPLH AC  +SV+ V+LLLRWGA E+LT++  + PAD+I        DD++ +AD QRI +ML RAPADRSWRRR WLVLSR CPTRV+I N + S  S                   NS K+A  SGED G G+ ETED++M +LR LV  LVGLEAD LFRLVV FL
Sbjct:   35 VNATNDLGLAALHYAASVVGPVHDKGDAVRVLLGAGVDVNVNTTTDSC-FTPLHVAVDGRIASDGTIRALLEG-ADVDSRARHDQTPLHIACKHASVSGVELLLRWGADEQLTNNRGDMPADVIRARQQGDLDDEEHDADNQRICRMLTRAPADRSWRRRGWLVLSRYCPTRVQIDNGSSSRGSYNG----------------NSAKVATLSGEDTGRGDEETEDRIMADLRDLVDWLVGLEADSLFRLVVAFL 270
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1760.1 vs. uniprot
Match: A0A6H5K6K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K9_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 1.810e-65
Identity = 147/270 (54.44%), Postives = 167/270 (61.85%), Query Frame = 3 
Query:  795 TSLVDATDHRGFTALHHAAL-IERHARDKGDAVRVLVAAGADVHAKTTDDHLRCAPLHILVCGRIPSTGTIRALLEGGADVNVRDSEDRTPLHEACIWSSVAAVDLLLRWGAHEKLTDDGDETPADMIGTS---------DGVGSD---DDDIEADQ-RIHQMLPRAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSTSSXXXXXXXXXXXXXNSTKLARFSGEDPGGGERETEDQMMVNLRGLVTRLVGLEADGLFRLVVGFL 1562
            +S V ATD  G+TALH     I     D GD VRVL+ AGADV AKTT D     PLH  V  RI   G IRALLEGGA+VN RD  D+TPLH AC  SSV  V+ LL WGA EKLTD   ETPA  I  S         D  G +   D+ IEADQ RI QML RAPADRSW RR WLVLSRSCPT+V+I+N + S S++ S SS              S ++   + +D GG ++ETEDQ  VN R LV RLVGLEAD LFRLVVGFL
Sbjct:    9 SSEVHATDDGGYTALHCCVCDINEPVLDNGDTVRVLLEAGADVDAKTTGDGNCATPLHYAVNRRIAPIGAIRALLEGGANVNARDVFDQTPLHVACARSSVNGVEFLLHWGADEKLTDLDGETPAGAIVDSEEETPPDVTDAPGENRGKDEAIEADQHRIRQMLARAPADRSWHRRRWLVLSRSCPTKVQISNTS-SSSNISSGSSGDGL----------SAEMVSVNCKDLGGDDKETEDQKTVNWRDLVVRLVGLEADVLFRLVVGFL 267
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1760.1 vs. uniprot
Match: D8LB27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB27_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 2.250e-63
Identity = 137/255 (53.73%), Postives = 165/255 (64.71%), Query Frame = 3 
Query:  804 VDATDHRGFTALHHAALIERHAR-DKGDAVRVLVAAGADVHAKTTDDHLRCAPLHILVCGRIPSTGTIRALLEGGADVNVRDSEDRTPLHEACIWSSVAAVDLLLRWGAHEKLTDDGDETPADMIGTSDGVGSDDDDIEAD-QRIHQMLPRAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSTSSXXXXXXXXXXXXXNSTKLARFSGEDPGGGERETEDQMMVNLRGLVTRLVGLEADGLFRLVVGFL 1562
            VD  D +G+TA+H A  + RH   D G  VR+L+ AG  V+A+T  D LR  PLH  V  RI S  T  ALLEGGA+ N       TPLH AC+ S+VAAV+LLLRWGA E  ++D  + PAD+IG  D    +D+D++AD +RI +ML RAPADRSWRRR WLVLSRSCPTRV+IAN+   GS V   S                 K+AR SGED GG E E E+QM V+  GLV  L+GLEADGLFRLVVGFL
Sbjct:  269 VDTGDDQGYTAIHCA--VNRHGPLDNGAVVRLLLEAGGGVNAETGRDFLRWTPLHFAVERRIASIDTTLALLEGGANTNAHGDHSGTPLHVACMHSNVAAVELLLRWGADETCSNDNGDVPADVIGVYDRGDVNDEDVKADHKRIRRMLARAPADRSWRRRGWLVLSRSCPTRVQIANK---GSRVNRNSCP--------------AKVARVSGEDLGGDEEEAENQMTVDWGGLVGSLLGLEADGLFRLVVGFL 504
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1760.1 vs. uniprot
Match: D8LQI9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI9_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 1.200e-59
Identity = 134/284 (47.18%), Postives = 167/284 (58.80%), Query Frame = 3 
Query:  582 LLLGGADKDVSDMGSKTPLFKAAENNHLGAVEELL---------------------------------AAGATRG-RTHNXXXXXLEIAANRGHATIAKAFLDTDTSLVDATDHRGFTALHHAALIERHARDKGDAVRVLVAAGADVHAKTTDDHLRCAPLHILVCGRIPSTGTIRALLEGGADVNVRDSEDRTPLHEACIWSSVAAVDLLLRWGAHEKLTDDGDETPADMIGTSDGVGSDDDDI-EAD-QRIHQMLPRAPADRSWRRRSWLVLSRSCPTRVKI 1325
            LLL G++ D +    +TPL  AA   H   + ELL                                  A A  G RT       LEIAA+ GHA + KA LD D+S +D TD  G+ ALH+AA+++   RD GDAVRVL+ AGADV+    +D     PLHI V GR  S GT+RALLEGG++++ R   D+TPLH AC  +SV  V+LLLRWGA EKLT++  +TPAD+I        DD++  EAD QRI +ML  APADRSWRRR WLVLSRSCPTRV+I
Sbjct:    2 LLLKGSNVDATTGYRETPLHLAASKGHALCISELLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGACANYGLRTEGTRCSPLEIAAHGGHADVLKALLDKDSSQLDDTDGEGWAALHYAAVVDGPVRDNGDAVRVLLGAGADVNETNNNDSC-FTPLHIAVNGRKVSDGTVRALLEGGSNIHARALLDQTPLHIACKHASVTGVELLLRWGADEKLTNNVGKTPADVIRPRRQNDFDDEEEREADNQRIRRMLEHAPADRSWRRRGWLVLSRSCPTRVEI 284
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1760.1 vs. uniprot
Match: D8LTL5_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTL5_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 2.380e-59
Identity = 169/460 (36.74%), Postives = 216/460 (46.96%), Query Frame = 3 
Query:  195 KQAGGVAMDERCWARLHAEKARRSYGLCSPRGRRVM*TSS--SGLNASPLFTLRRRGVQRRPPRRS**LEQIRTCVVGGNVVRSTSPPQQGTTES*VSFF*KGPM*TPRRVPATRPSISLLPRAIGYCLAELLLGGADKDVSDMGSKTPLFKAAENNHLGAVEELLAAGATRGRTHNXXXXXLEIAANRGHATIAKAFLDTDTSLVDATDHRGFTALHHAALIERHARDKGDAVRVLVAAGADVHAKTTDDHLRCAPLHILVCGRIPSTGTIRALLEGGADVNVRDSEDRTPLHEACIWSSVAAVDLLLRWGAHEKLTDDGDETPADMIGTSDGVGSDDDDIEAD-QRIHQMLPRAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSTSSXXXXXXXXXXXXXNSTKLARFSGEDPGGGERETEDQM-MVNLRGLVTRLVGLEADGLFRLVVGFL 1562
            KQ+GG AMDE CW RLH  +ARR YGLCSPRGRRV+  ++   G + S L     RG ++                       ST+                                             L++ GAD ++ D  +++PL  AAE  H   +               XXXXX           I++  +                                         GADV A+ T       PLH+ V  R+ S GTI ALLEGGAD++V D  D TPLH AC  SSV  V+LLLR GA E+LT++  + PAD++G S    + D++IE D QRI +ML RAPADRSWRRR  LVLSRSCPTRV+IAN + SGSS+GS+                  K++  S ++ GG   ET DQM MV+ R LV RL+ LE DGLFRLVVGF+
Sbjct:    3 KQSGGNAMDEHCWVRLHTARARRWYGLCSPRGRRVIDVNALFGGESESALHVAAARGAEK----------------------ASTA---------------------------------------------LMIAGADPNLRDRMNRSPLHLAAEAGHRHIIGIXXXXXXXXXXXXXXXXXXXXXXXXXXAPCISELLVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYP--GADVDAEATGSDCS-TPLHVAVDRRVASIGTIGALLEGGADIHVFDEIDDTPLHRACKRSSVTGVELLLRRGADEELTNEEGDAPADIVGASPSNATVDEEIEVDNQRIRRMLARAPADRSWRRRGLLVLSRSCPTRVQIANRSSSGSSIGSSKGCF-------------AKVSPASRKNSGGDNEETGDQMVMVDWRYLVCRLIELEVDGLFRLVVGFV 379
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1760.1 vs. uniprot
Match: A0A6H5L7E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E1_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 1.390e-57
Identity = 161/344 (46.80%), Postives = 188/344 (54.65%), Query Frame = 3 
Query:  573 LAELLLGGADKDVSDMGSKTPLFKAAE--------------NNHLGAVEELLAAGATRG---RTHNXXXXXLEIAANRGHATIAKAFLDTDTSLVDATDHRGFTALHHAALIERHARDKGDAVRVLVAAGADVHAKTTDDHLRCAPLHILVCGRIPSTGTIRALLEGGADVNVRDSEDRTPLHEACIWSSVAAVDLLLRWGAHEKLTDDGDETPADMIGTSDGVGSDDDDIEAD-QRIHQMLPRAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSTSSXXXXXXXXXXXXXNSTKLARFSGEDPGGGERETEDQMMVNLRGLVTRLVGLEADGLFRLV 1550
            +  LLL  AD         TPL  AA               NNHL AV+ELLAAGA  G      N     L++AA RGHA +  A LD D              +  A  ++    D GDAVR L+  GADV+AKTTD  +  +PLH+ V  RI S G I               +D  PLH AC  SSV  V+LLLRWGA EKLT+   +TPAD+I        DD + EAD QRI +M+   PADRSWRRR WLVLSRSCPTRV+IAN    GSS      XXXXXXXXX    N+ K+AR SGE     +  TE  M+V+LR LV RLVGLEADGL RLV
Sbjct:  152 IGSLLLNRADVHAKTASQSTPLHLAASEGRALCLSELLLGANNHLEAVQELLAAGANCGLRCMLTNGSHSSLDMAAGRGHADVLTALLDKDN-------------IFFAMSVDGPVHDNGDAVRALLGVGADVNAKTTDS-ICASPLHLAVDRRIASDGMIXXXXXXXXXXXXXXGDDNKPLHLACRHSSVHGVELLLRWGADEKLTNSVGKTPADVIRALQQGDLDDKEREADDQRIGRMVALVPADRSWRRRGWLVLSRSCPTRVQIAN----GSSXXXX--XXXXXXXXXRINGNAAKVARVSGESSSRDDERTEGDMIVDLRNLVGRLVGLEADGLLRLV 475
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1760.1 vs. uniprot
Match: A0A6H5JHD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD6_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 2.480e-57
Identity = 135/282 (47.87%), Postives = 156/282 (55.32%), Query Frame = 3 
Query:  717 NXXXXXLEIAANRGHATIAKAFLDTDTSLVDATDHRGFTALHHAALIERHARDKGDAVRVLVAAGADVHAKTTDDHLRCAPLHILVCGRIPSTGTIRALLEGGADVNVRDSEDRTPLHEACIWSSVAAVDLLLRWGAHEKLTDDGDETPADMIGTSDGVGSDDDDIEADQRIHQMLPRAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSTSSXXXXXXXXXXXXXNSTKLARFSGEDPGGGERETEDQMMVNLRGLVTRLVGLEADGLFRLVVGFL 1562
            N     LE+AAN GH  +A                    ALH AA+     RD GDAVR L+ AGADV+ + T++ +   PLH+  C RI S GTIRALLEGGA++N   +ED TPLHEAC   SVA V+LLL WGA EKLT+D  +TPAD+IGT                           RSWRRR WLVLSR C TRV IAN + S                     X   K+AR SGED G  + ET DQMMV+LR LV RLVGLEA GLFRLVVGFL
Sbjct:  162 NNTRSPLEVAANGGHGNVA--------------------ALHCAAVFVVAVRDNGDAVRALLGAGADVNVEATNN-ICFTPLHLAACHRIASDGTIRALLEGGANINAC-TEDETPLHEACWHLSVAGVELLLHWGADEKLTNDVGDTPADVIGT---------------------------RSWRRRGWLVLSRYCQTRVNIANRSSSSGXX-----------------XXXAKVARASGEDAGRRDEETADQMMVDLRDLVGRLVGLEAGGLFRLVVGFL 377
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1288.1760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD22_ECTSI3.870e-16687.21MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5L812_9PHAE8.410e-8455.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQN0_ECTSI9.960e-8155.59Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
A0A6H5JXF0_9PHAE1.200e-6754.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6K9_9PHAE1.810e-6554.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB27_ECTSI2.250e-6353.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LQI9_ECTSI1.200e-5947.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LTL5_ECTSI2.380e-5936.74MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
A0A6H5L7E1_9PHAE1.390e-5746.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHD6_9PHAE2.480e-5747.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1288contigE-siliculosus-1a_F_contig1288:20454..22814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1038
Model size1655
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.G
Ec32 orthologEc-11_000110.1
Ec32 ortholog descriptionAnkyrin repeat-containing domain
EggNOG OGsCOG0666@1,KOG4177@2759
EggNOG free text desc.response to abiotic stimulus
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
KEGG koko:K21440
Seed eggNOG ortholog2880.D8LD22
Seed ortholog evalue1.3e-137
Seed ortholog score496.1
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1288.1760.1prot_E-siliculosus-1a_F_contig1288.1760.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1288 20454..22197 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927808.9417589-CDS-E-siliculosus-1a_F_contig1288:20453..205471622927808.9417589-CDS-E-siliculosus-1a_F_contig1288:20453..20547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1288 20454..20547 -
1696318688.7602103-CDS-E-siliculosus-1a_F_contig1288:20453..205471696318688.7602103-CDS-E-siliculosus-1a_F_contig1288:20453..20547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1288 20454..20547 -
1622927808.9534297-CDS-E-siliculosus-1a_F_contig1288:21253..221971622927808.9534297-CDS-E-siliculosus-1a_F_contig1288:21253..22197Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1288 21254..22197 -
1696318688.774759-CDS-E-siliculosus-1a_F_contig1288:21253..221971696318688.774759-CDS-E-siliculosus-1a_F_contig1288:21253..22197Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1288 21254..22197 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927808.9662664-UTR-E-siliculosus-1a_F_contig1288:22197..228141622927808.9662664-UTR-E-siliculosus-1a_F_contig1288:22197..22814Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1288 22198..22814 -
1696318688.7836192-UTR-E-siliculosus-1a_F_contig1288:22197..228141696318688.7836192-UTR-E-siliculosus-1a_F_contig1288:22197..22814Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1288 22198..22814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1288.1760.1

>prot_E-siliculosus-1a_F_contig1288.1760.1 ID=prot_E-siliculosus-1a_F_contig1288.1760.1|Name=mRNA_E-siliculosus-1a_F_contig1288.1760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=346bp
MGSKTPLFKAAENNHLGAVEELLAAGATRGRTHNGDDSPLEIAANRGHAT
IAKAFLDTDTSLVDATDHRGFTALHHAALIERHARDKGDAVRVLVAAGAD
VHAKTTDDHLRCAPLHILVCGRIPSTGTIRALLEGGADVNVRDSEDRTPL
HEACIWSSVAAVDLLLRWGAHEKLTDDGDETPADMIGTSDGVGSDDDDIE
ADQRIHQMLPRAPADRSWRRRSWLVLSRSCPTRVKIANENRSGSSVGSTS
SSNGSVGSSSSSNGNSTKLARFSGEDPGGGERETEDQMMVNLRGLVTRLV
GLEADGLFRLVVGFLKRGRNGVLFTSLPQLSDSSRQALATKVVLW*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1288:20454..22814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1288.1760.1 ID=mRNA_E-siliculosus-1a_F_contig1288.1760.1|Name=mRNA_E-siliculosus-1a_F_contig1288.1760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2361bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1288:20454..22814- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACATCAGCAGCTGCTTCACAACAATCTCAAGATCGAACTTGTGTCGA
TGGCTTTGAGGTGGAGATTTTCAAGCTCGTCCAAAGAGAGGCGACCTCGA
GGCAGTGGAAGGGCTTCGAGCACCGCTCGAGCACGCCGCTGCCACGGAAA
CTTGGGTCTCTTCACAAGGCTGATGGACGCCGGTGCCAGCGCGGAAGCAG
GCTGGCGGGGTTGCGATGGACGAACGCTGCTGGGCGCGGCTGCATGCAGA
AAAAGCAAGAAGATCGTACGGGCTCTGCTCACCGCGGGGGCGAAGGGTGA
TGTAAACGTCCTCTTCGGGGCTAAACGCGAGTCCGCTCTTCACCTTGCGG
CGGCGCGGGGTGCAGAGGAGGCCTCCAAGGCGCTCATGATAGCTGGAGCA
AATCCGAACCTGCGTGGTGGGAGGAAACGTAGTCCGTTCCACCTCACCGC
CACAGCAGGGCACGACCGAGTCATAGGTATCCTTCTTCTGAAAGGGGCCG
ATGTAGACGCCAAGACGCGTGCCGGCGACACGTCCCTCCATCTCGCTGCT
TCCAAGGGCCATAGGCTATTGCCTCGCTGAACTTTTGCTGGGCGGCGCAG
ACAAGGACGTGAGCGATATGGGAAGTAAAACGCCACTGTTCAAGGCGGCA
GAAAACAACCACCTCGGAGCTGTCGAAGAGCTTCTAGCTGCCGGTGCCAC
CCGGGGCCGTACCCACAATGGTGACGATTCTCCACTTGAGATTGCCGCAA
ACAGAGGTCACGCGACCATCGCGAAAGCCTTCCTAGACACGGACACTAGT
CTAGTCGACGCCACCGATCATCGCGGATTCACAGCCCTACACCATGCTGC
ACTTATTGAGCGACATGCCCGTGACAAGGGCGATGCCGTCCGTGTACTCG
TGGCAGCTGGGGCTGATGTCCACGCCAAGACTACCGACGACCACTTGCGC
TGCGCGCCTCTCCATATTCTCGTTTGTGGTCGGATACCATCGACCGGCAC
GATCCGCGCCCTGTTGGAAGGAGGGGCGGATGTCAATGTGCGTGACAGTG
AGGACCGGACACCACTGCATGAAGCTTGCATATGGTCGAGTGTGGCGGCC
GTGGATCTTCTGTTGCGTTGGGGAGCACATGAGAAGCTCACGGACGATGG
CGATGAAACCCCTGCAGACATGATAGGAACGTCGGACGGTGTCGGTAGCG
ACGATGATGACATCGAGGCCGACCAGCGCATTCACCAAATGCTGCCACGC
GCTCCAGCCGACAGGTCGTGGCGTCGCCGCAGCTGGCTGGTGCTGAGCCG
TTCCTGCCCGACCAGGGTGAAGATTGCAAATGAAAATAGGAGCGGCAGCA
GTGTCGGCAGCACCAGCAGCAGCAACGGTAGTGTCGGCAGCAGCAGCAGC
AGCAACGGTAACTCCACCAAGCTTGCGAGGTTCAGCGGCGAGGACCCGGG
TGGGGGTGAGAGGGAGACGGAAGACCAGATGATGGTGAACTTAAGGGGTT
TGGTCACCAGGCTAGTCGGACTGGAGGCTGACGGCTTATTCCGTTTGGTG
GTAGGCTTCCTGTGACGTAGGTACAAGAGAGGAGAAGCTTGTTTCCGCTC
CGCTGATGATTTTGCTTGGGTGCCATCGAACCGAAGATGAATTACGTGTT
CTTCTCGCGAGTGTGCCCGTGCAAAAAAAGCACGGGACTTGCGGATGTCA
TTTTTCCTCGATCGCCTCGCTTCATCGCTCAACCAACAGTAGTGGCGGCC
GAACAAGAAATGTCTACCACGGGCAGGACCGATCAGTTGTCAGGTGCCCG
AGATCGCTTTCGCCCGTCGGCAGCGAGAGCCAACTATACTACTGCTGTAC
CTTCCTCTTTCTTTCGATCATATGTCTGTCTGTGCGTGTGATATGCTATT
GCGGGTAGCCTTCAAGGAAACTATCGTGGGAATGGTATAGCTAAGCATGC
CGTTGTGAGCTCTTTAGTGGACGGGTCGAGTCGGCTGCCCCGTCAAACCT
GTCGTCCTGTGCACCACTGGCGGTGCAACCCATGGCTCTTCTGCATACTA
AAACAGTTCCAGATTGAAACACTCAGGATCTCTACCTCTTGATGTCATTC
ATGGCCCGGGCTACTGGCAAGGGCATGTAAGCCCTTCTGTTTATCTTGCG
TACTTGGAAAGATGGAATGATCCCACGTCATGCTGTTGATAGGCGCGCTC
TGACCAACCGCCATCTTTGTGCTCTTCTCCCCTGGGCTACGTACTGCATT
TGGCGTTTCAATCGCAGGAAGAGAGGTCGGAACGGTGTCCTTTTCACGAG
TTTACCGCAGCTGTCCGATTCTTCGCGCCAGGCGTTGGCCACTAAAGTAG
TGCTGTGGTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1288:20454..22814-

>mRNA_E-siliculosus-1a_F_contig1288.1760.1 ID=mRNA_E-siliculosus-1a_F_contig1288.1760.1|Name=mRNA_E-siliculosus-1a_F_contig1288.1760.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2076bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1288:20454..22814- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGAAGTAAAACGCCACTGTTCAAGGCGGCAGAAAACAACCACCTCGG
AGCTGTCGAAGAGCTTCTAGCTGCCGGTGCCACCCGGGGCCGTACCCACA
ATGGTGACGATTCTCCACTTGAGATTGCCGCAAACAGAGGTCACGCGACC
ATCGCGAAAGCCTTCCTAGACACGGACACTAGTCTAGTCGACGCCACCGA
TCATCGCGGATTCACAGCCCTACACCATGCTGCACTTATTGAGCGACATG
CCCGTGACAAGGGCGATGCCGTCCGTGTACTCGTGGCAGCTGGGGCTGAT
GTCCACGCCAAGACTACCGACGACCACTTGCGCTGCGCGCCTCTCCATAT
TCTCGTTTGTGGTCGGATACCATCGACCGGCACGATCCGCGCCCTGTTGG
AAGGAGGGGCGGATGTCAATGTGCGTGACAGTGAGGACCGGACACCACTG
CATGAAGCTTGCATATGGTCGAGTGTGGCGGCCGTGGATCTTCTGTTGCG
TTGGGGAGCACATGAGAAGCTCACGGACGATGGCGATGAAACCCCTGCAG
ACATGATAGGAACGTCGGACGGTGTCGGTAGCGACGATGATGACATCGAG
GCCGACCAGCGCATTCACCAAATGCTGCCACGCGCTCCAGCCGACAGGTC
GTGGCGTCGCCGCAGCTGGCTGGTGCTGAGCCGTTCCTGCCCGACCAGGG
TGAAGATTGCAAATGAAAATAGGAGCGGCAGCAGTGTCGGCAGCACCAGC
AGCAGCAACGGTAGTGTCGGCAGCAGCAGCAGCAGCAACGGTAACTCCAC
CAAGCTTGCGAGGTTCAGCGGCGAGGACCCGGGTGGGGGTGAGAGGGAGA
CGGAAGACCAGATGATGGTGAACTTAAGGGGTTTGGTCACCAGGCTAGTC
GGACTGGAGGCTGACGGCTTATTCCGTTTGGTGGTAGGCTTCCTATGGGA
AGTAAAACGCCACTGTTCAAGGCGGCAGAAAACAACCACCTCGGAGCTGT
CGAAGAGCTTCTAGCTGCCGGTGCCACCCGGGGCCGTACCCACAATGGTG
ACGATTCTCCACTTGAGATTGCCGCAAACAGAGGTCACGCGACCATCGCG
AAAGCCTTCCTAGACACGGACACTAGTCTAGTCGACGCCACCGATCATCG
CGGATTCACAGCCCTACACCATGCTGCACTTATTGAGCGACATGCCCGTG
ACAAGGGCGATGCCGTCCGTGTACTCGTGGCAGCTGGGGCTGATGTCCAC
GCCAAGACTACCGACGACCACTTGCGCTGCGCGCCTCTCCATATTCTCGT
TTGTGGTCGGATACCATCGACCGGCACGATCCGCGCCCTGTTGGAAGGAG
GGGCGGATGTCAATGTGCGTGACAGTGAGGACCGGACACCACTGCATGAA
GCTTGCATATGGTCGAGTGTGGCGGCCGTGGATCTTCTGTTGCGTTGGGG
AGCACATGAGAAGCTCACGGACGATGGCGATGAAACCCCTGCAGACATGA
TAGGAACGTCGGACGGTGTCGGTAGCGACGATGATGACATCGAGGCCGAC
CAGCGCATTCACCAAATGCTGCCACGCGCTCCAGCCGACAGGTCGTGGCG
TCGCCGCAGCTGGCTGGTGCTGAGCCGTTCCTGCCCGACCAGGGTGAAGA
TTGCAAATGAAAATAGGAGCGGCAGCAGTGTCGGCAGCACCAGCAGCAGC
AACGGTAGTGTCGGCAGCAGCAGCAGCAGCAACGGTAACTCCACCAAGCT
TGCGAGGTTCAGCGGCGAGGACCCGGGTGGGGGTGAGAGGGAGACGGAAG
ACCAGATGATGGTGAACTTAAGGGGTTTGGTCACCAGGCTAGTCGGACTG
GAGGCTGACGGCTTATTCCGTTTGGTGGTAGGCTTCCTGAAGAGAGGTCG
GAACGGTGTCCTTTTCACGAGTTTACCGCAGCTGTCCGATTCTTCGCGCC
AGGCGTTGGCCACTAAAGTAGTGCTGTGGTGAGAAGAGAGGTCGGAACGG
TGTCCTTTTCACGAGTTTACCGCAGCTGTCCGATTCTTCGCGCCAGGCGT
TGGCCACTAAAGTAGTGCTGTGGTGA
back to top