mRNA_E-siliculosus-1a_F_contig12879.1757.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12879.1757.1
Unique NamemRNA_E-siliculosus-1a_F_contig12879.1757.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12879.1757.1 vs. uniprot
Match: D7G3D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D8_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 4.380e-6
Identity = 20/20 (100.00%), Postives = 20/20 (100.00%), Query Frame = 1 
Query:    1 EIVCFEGCCPSQDVKPQETG 60
            EIVCFEGCCPSQDVKPQETG
Sbjct:   45 EIVCFEGCCPSQDVKPQETG 64
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12879.1757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3D8_ECTSI4.380e-6100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12879contigE-siliculosus-1a_F_contig12879:907..1388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size207
Model size210
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927807.9864109-CDS-E-siliculosus-1a_F_contig12879:906..10561622927807.9864109-CDS-E-siliculosus-1a_F_contig12879:906..1056Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12879 907..1056 +
1696318688.524324-CDS-E-siliculosus-1a_F_contig12879:906..10561696318688.524324-CDS-E-siliculosus-1a_F_contig12879:906..1056Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12879 907..1056 +
1622927807.9975495-CDS-E-siliculosus-1a_F_contig12879:1329..13861622927807.9975495-CDS-E-siliculosus-1a_F_contig12879:1329..1386Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12879 1330..1386 +
1696318688.5317092-CDS-E-siliculosus-1a_F_contig12879:1329..13861696318688.5317092-CDS-E-siliculosus-1a_F_contig12879:1329..1386Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12879 1330..1386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12879.1757.1prot_E-siliculosus-1a_F_contig12879.1757.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12879 907..1386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12879.1757.1

>prot_E-siliculosus-1a_F_contig12879.1757.1 ID=prot_E-siliculosus-1a_F_contig12879.1757.1|Name=mRNA_E-siliculosus-1a_F_contig12879.1757.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=69bp
EIVCFEGCCPSQDVKPQETGSEKICCKLCTREVQRSKMRLHVGGHILKDK
ALQVSTVCGFCGEVGCRST
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mRNA from alignment at E-siliculosus-1a_F_contig12879:907..1388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12879.1757.1 ID=mRNA_E-siliculosus-1a_F_contig12879.1757.1|Name=mRNA_E-siliculosus-1a_F_contig12879.1757.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=482bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12879:907..1388+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAAATTGTCTGCTTCGAGGGATGCTGCCCGTCTCAAGATGTTAAACCTCA
GGAGACTGGCTCCGAGAAGATCTGCTGCAAACTCTGCACGAGAGAAGTTC
AACGATCGAAAATGAGACTGCACGTGGGAGGTCACATTTTGAAGGACAAG
GTGCGGGTGTTCTTAATTTTTTTTGGCATGGGAATGCAAGACCGGGTGAG
ATTCAACCTGTTTTGATACGTGCATGGCTTCGTTATTTTTCATTAGCATC
GTATAGACTTCACCTGCGTGGCCTGCTTCACCCTGTCCCCTGTGTTATTA
TTTCGCGAGATGTTGGGCAACGGTGCTTACCGGACGCGCGTGGACTCATG
CCGCATATTTCAATCCGGCGTGGAAATGTCAGCGGCACGCTCACGATCCA
TCCTCTCTCCCTTTTTGTTGTAGGCTTTGCAAGTGAGCACTGTCTGTGGC
TTCTGTGGTGAGGTCGGGTGCCGCAGCACCAT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12879:907..1388+

>mRNA_E-siliculosus-1a_F_contig12879.1757.1 ID=mRNA_E-siliculosus-1a_F_contig12879.1757.1|Name=mRNA_E-siliculosus-1a_F_contig12879.1757.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12879:907..1388+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAAATTGTCTGCTTCGAGGGATGCTGCCCGTCTCAAGATGTTAAACCTCA
GGAGACTGGCTCCGAGAAGATCTGCTGCAAACTCTGCACGAGAGAAGTTC
AACGATCGAAAATGAGACTGCACGTGGGAGGTCACATTTTGAAGGACAAG
GAAATTGTCTGCTTCGAGGGATGCTGCCCGTCTCAAGATGTTAAACCTCA
GGAGACTGGCTCCGAGAAGATCTGCTGCAAACTCTGCACGAGAGAAGTTC
AACGATCGAAAATGAGACTGCACGTGGGAGGTCACATTTTGAAGGACAAG
GCTTTGCAAGTGAGCACTGTCTGTGGCTTCTGTGGTGAGGTCGGGTGCCG
CAGCACCGCTTTGCAAGTGAGCACTGTCTGTGGCTTCTGTGGTGAGGTCG
GGTGCCGCAGCACC
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