mRNA_E-siliculosus-1a_F_contig12871.1755.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12871.1755.1
Unique NamemRNA_E-siliculosus-1a_F_contig12871.1755.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12871.1755.1 vs. uniprot
Match: D8LKZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ3_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.980e-19
Identity = 38/44 (86.36%), Postives = 38/44 (86.36%), Query Frame = 2 
Query:    2 DKKPHGATGGADQDAPFVSPEDAVGFGARRLL*RLPTKTYCTAG 133
            DK PHGATGG DQDAPF  PEDAVGFGARRLL RLPTKT CTAG
Sbjct:    2 DKNPHGATGGDDQDAPFEDPEDAVGFGARRLLQRLPTKTCCTAG 45
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BLAST of mRNA_E-siliculosus-1a_F_contig12871.1755.1 vs. uniprot
Match: D8LMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM4_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 5.960e-18
Identity = 38/44 (86.36%), Postives = 38/44 (86.36%), Query Frame = 2 
Query:    2 DKKPHGATGGADQDAPFVSPEDAVGFGARRLL*RLPTKTYCTAG 133
            DK PHGATGG DQDAPF  PEDAVGFGARRLL RLPTKTY TAG
Sbjct:    2 DKNPHGATGGDDQDAPFEDPEDAVGFGARRLLQRLPTKTYGTAG 45
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BLAST of mRNA_E-siliculosus-1a_F_contig12871.1755.1 vs. uniprot
Match: D7FRZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.170e-15
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   10 ASRCYGRGRPGRALRKPGGCCGFWSSEVAVAAANEDVLHSR 132
            ASRCYGRGR GRALR+PGGC GFWSSEVA  AANE+VLHSR
Sbjct:  323 ASRCYGRGRLGRALRRPGGCRGFWSSEVAATAANENVLHSR 363
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12871.1755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKZ3_ECTSI3.980e-1986.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMM4_ECTSI5.960e-1886.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRZ1_ECTSI2.170e-1585.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12871contigE-siliculosus-1a_F_contig12871:503..637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size135
Model size137
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927807.9137778-CDS-E-siliculosus-1a_F_contig12871:502..6371622927807.9137778-CDS-E-siliculosus-1a_F_contig12871:502..637Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12871 503..637 -
1696318688.5027075-CDS-E-siliculosus-1a_F_contig12871:502..6371696318688.5027075-CDS-E-siliculosus-1a_F_contig12871:502..637Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12871 503..637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12871.1755.1prot_E-siliculosus-1a_F_contig12871.1755.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12871 503..637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12871.1755.1

>prot_E-siliculosus-1a_F_contig12871.1755.1 ID=prot_E-siliculosus-1a_F_contig12871.1755.1|Name=mRNA_E-siliculosus-1a_F_contig12871.1755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=45bp
GQKASRCYGRGRPGRALRKPGGCCGFWSSEVAVAAANEDVLHSR*
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mRNA from alignment at E-siliculosus-1a_F_contig12871:503..637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12871.1755.1 ID=mRNA_E-siliculosus-1a_F_contig12871.1755.1|Name=mRNA_E-siliculosus-1a_F_contig12871.1755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=135bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12871:503..637- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGACAAAAAGCCTCACGGTGCTACGGGAGGGGCCGACCAGGACGCGCCCT
TCGTAAGCCCGGAGGATGCTGTGGGTTTTGGAGCTCGGAGGTTGCTGTAG
CGGCTGCCAACGAAGACGTACTGCACAGCAGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12871:503..637-

>mRNA_E-siliculosus-1a_F_contig12871.1755.1 ID=mRNA_E-siliculosus-1a_F_contig12871.1755.1|Name=mRNA_E-siliculosus-1a_F_contig12871.1755.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=270bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12871:503..637- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGACAAAAAGCCTCACGGTGCTACGGGAGGGGCCGACCAGGACGCGCCCT
TCGTAAGCCCGGAGGATGCTGTGGGTTTTGGAGCTCGGAGGTTGCTGTAG
CGGCTGCCAACGAAGACGTACTGCACAGCAGGTGAGGACAAAAAGCCTCA
CGGTGCTACGGGAGGGGCCGACCAGGACGCGCCCTTCGTAAGCCCGGAGG
ATGCTGTGGGTTTTGGAGCTCGGAGGTTGCTGTAGCGGCTGCCAACGAAG
ACGTACTGCACAGCAGGTGA
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