mRNA_E-siliculosus-1a_F_contig1287.1753.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1287.1753.1
Unique NamemRNA_E-siliculosus-1a_F_contig1287.1753.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1753.1 vs. uniprot
Match: D7FW41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW41_ECTSI)

HSP 1 Score: 1166 bits (3016), Expect = 0.000e+0
Identity = 576/586 (98.29%), Postives = 581/586 (99.15%), Query Frame = 1
Query:    1 MDSDGDAAMANGGGGASADDEHCASGESSVPEHCEECEDRRPVWDCKQGCGGVFCDVCFYALHRKGKRALHKPEKIERPGAATGNCGPAAGKGLSGWIGPRLPPRKEEAHPDMYDRKSFSERSKYIPVRLTSDERRYLRLVESVISVTDYTGKVDADFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDERGYNEHEGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLREKGGLAILSDPNVEIATREVLANGRPRPQITKDIRRKETAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARLASLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQR 1758
            MDSDGDAAMANGGGGASA+DE+CASGE SVPEHCEECEDRRPVWDCKQGCGGVFCDVCFYALHRKGKRALHKPEKIERPGAATGNCGPAAGKGLSGWIGPRLPP+KEEAHPDMYDRKSFSERSKYIPVRLTSDERRYLRLVESVISVTDYTGKVDADFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDERGY+EHEGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLRE+GGLAILSDPNVEIATREVLANGRPRPQITKDIRRKETAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQ    SLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQR
Sbjct:    1 MDSDGDAAMANGGGGASANDENCASGERSVPEHCEECEDRRPVWDCKQGCGGVFCDVCFYALHRKGKRALHKPEKIERPGAATGNCGPAAGKGLSGWIGPRLPPQKEEAHPDMYDRKSFSERSKYIPVRLTSDERRYLRLVESVISVTDYTGKVDADFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDERGYSEHEGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLRERGGLAILSDPNVEIATREVLANGRPRPQITKDIRRKETAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQ----SLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQR 582          
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1753.1 vs. uniprot
Match: A0A835Z3Z0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z0_9STRA)

HSP 1 Score: 599 bits (1545), Expect = 6.180e-208
Identity = 299/470 (63.62%), Postives = 367/470 (78.09%), Query Frame = 1
Query:  352 SFSERSKYIPVRLTSDERRYLRLVESVISVTDYTGKVDADFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDERGYNEHEGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLREKGGLAILSDPNVEIATREVLANG-RPRPQITKDIRRKETAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARLASLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQR 1758
            SF ER+KYIP+RLT +ER+YLRL+ES +SV+DYTG VD +F + + R H  ++ I+  L GLV+AVDY  G  +++E+ +  H+ FFQDV EI RRHKIMNPEKMRTEY K+IYLMQD   P  Q +L++N+ R +KSVY  L+EK GLA+L D  + IAT+E+L +  + R  I ++I+ KE AV  +KR Y +  LS+DDIHTCLYSMCDNDSFLNSNR+PIDKMIA+L++YFSP+    + YSLAI AGE GARLTHSH RQYNFA    L SLTLWR+I+HDMFRLWCL E DLLS +  Y L  TGQG QRVQ  P+T KAMQEIL+  Q  V++WVGSSVIHLGD NVPN+LMFIDKYTQVSRIL PIV CLEQL  L ++D+ +   I+ GYGG+E L  DIL DFFR AFDGSGADNF++AGSCIDGRLTSAWNWCSQL+SKPF+P+F+LTGF  FDG++Q+
Sbjct:    5 SFVERAKYIPLRLTLEERQYLRLLESALSVSDYTGTVDREFKTENHRKHKQMEHISALLGGLVVAVDYDSGQELLEEKDFTAHDAFFQDVFEIGRRHKIMNPEKMRTEYGKMIYLMQDTCGPVGQ-LLHVNVMRNIKSVYYLLQEKNGLAMLEDQYMAIATKEILPDANKSRAAINQEIKMKERAVEYLKRHYCSATLSKDDIHTCLYSMCDNDSFLNSNRLPIDKMIAYLKRYFSPENI-QEGYSLAIVAGEEGARLTHSHERQYNFA----LQSLTLWREIIHDMFRLWCLAELDLLSSTDPYTLTPTGQGLQRVQPCPRTHKAMQEILYLTQKEVKNWVGSSVIHLGDKNVPNSLMFIDKYTQVSRILSPIVMCLEQLAKLTEEDKGVDIYIEHGYGGVERLTMDILHDFFRCAFDGSGADNFYEAGSCIDGRLTSAWNWCSQLSSKPFYPVFKLTGFMGFDGDWQK 468          
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1753.1 vs. uniprot
Match: A0A6H5JV81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV81_9PHAE)

HSP 1 Score: 581 bits (1497), Expect = 1.990e-202
Identity = 296/321 (92.21%), Postives = 299/321 (93.15%), Query Frame = 1
Query:  676 YAKLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLREKGGLAILSDPNVEIATREVLANGRPRPQITKDIRRKETAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARLASLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAG 1638
            +  LIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLRE+GGLAILSDPNVEIATREVLANGRPRPQITKDIRRKE AVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLE+YFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARL                   GEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAG
Sbjct:   47 FTTLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLRERGGLAILSDPNVEIATREVLANGRPRPQITKDIRRKEAAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEQYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARL-------------------GEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAG 348          
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1753.1 vs. uniprot
Match: B5Y5N5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y5N5_PHATC)

HSP 1 Score: 574 bits (1480), Expect = 6.170e-198
Identity = 284/468 (60.68%), Postives = 362/468 (77.35%), Query Frame = 1
Query:  352 SFSERSKYIPVRLTSDERRYLRLVESVISVTDYTGKVDADFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDERGYNEHEGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLREKGGLAILSDPNVEIATREVLANGRPRPQITKDIRRKETAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARLASLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQ 1755
            +  ER+KYIP+RL+  ER+ LRL+E+ ++ TDYT  VD  F S S+R H  LK +T  L GLV A DY  G  ++ +  Y   E FF+ + E+ARRHKIMNPEKMRTEY K+IYL+QDAVSP  +  L  +IK  ++SVY+FL ++ GL +LSD  +E AT E+LA  + R QI ++IR+KE AV+ IKRKY +  L+ +DIH CLYS+CDN+SFLNSNRVPIDK+I +L K+FSP+   ++ YSL+I +GE G+RL+HSH RQY FA    L SLTLWRDI+ DMFRLW + EEDLLS+S +Y L DTGQG QRVQ SPQT++AM+++L   Q  V  W+GS++IHLGDHNVPNAL FIDKYTQV RIL PIV+CLE L  L +KD+ IQ +ID G+GG++ LR+DIL+DFFRSAFDGSGA+NF+DAGSCIDGRLTSAWNWCSQL +KPF+P+F+LTGFT FDG+F+
Sbjct:   16 TVKERAKYIPLRLSLGERKMLRLMEASMTCTDYTTHVDRPFKSTSRRVHEQLKGVTSVLRGLVTACDYAAGQQLLQDDNYAHFEKFFRQMFEMARRHKIMNPEKMRTEYGKVIYLLQDAVSPSLRPHLGFSIKGPIESVYKFLEDRRGLEVLSDKLIETATEEILAGWKSRSQIDQEIRQKERAVSLIKRKYRSSLLTSEDIHLCLYSICDNNSFLNSNRVPIDKVIDYLTKHFSPEHV-EEGYSLSIVSGEDGSRLSHSHERQYYFA----LQSLTLWRDIVDDMFRLWAMAEEDLLSDSVSYVLQDTGQGMQRVQQSPQTYRAMRQVLVRVQSKVSHWIGSNMIHLGDHNVPNALSFIDKYTQVPRILAPIVTCLENLEQLCEKDDGIQQMIDDGFGGVKKLRQDILYDFFRSAFDGSGANNFYDAGSCIDGRLTSAWNWCSQLPTKPFYPIFKLTGFTGFDGDFK 478          
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1753.1 vs. uniprot
Match: A0A1Z5JZ97_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZ97_FISSO)

HSP 1 Score: 583 bits (1504), Expect = 2.300e-196
Identity = 288/468 (61.54%), Postives = 360/468 (76.92%), Query Frame = 1
Query:  352 SFSERSKYIPVRLTSDERRYLRLVESVISVTDYTGKVDADFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDERGYNEHEGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLREKGGLAILSDPNVEIATREVLANGRPRPQITKDIRRKETAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARLASLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQ 1755
            S  ERSKYIP+RL+  ER+ LRLVE+ +   DYT +VD  F S ++R+H  LK +T  L GLV A DY+    +++   Y+++E FF+ + EIARRHKIMNPEKMRTEY KLIYL+QDAVSP     L  ++K  ++SVY+FL E+GGL +LSD  +E AT E+LA GRPR  I  +IR+KE AV  +KRKY T  LSQDDIH CLYS+CDN+SFLNSNRVPIDK+I FL+  FSP+   ++ YSL+I +GE G+RL+HSH RQ+ +A    L SLTLWRDI+ DMFRLW + EEDLLSES  Y L DTGQG QRVQ SP+ ++AMQE+L   ++ V  WVGSSV+H+GDHNVPNAL FIDKYTQV RILGPI+SCLE L  +   DE I ++I+ G+GG+E LRKDIL+DFFRSAFDGSG+D ++DAGSC+DGRLTSAWNWCSQL  KPF+P+F+LTGFT FDG+F+
Sbjct:  376 SVKERSKYIPLRLSLGERKMLRLVEAAMYCCDYTSEVDRCFSSGARRTHAQLKGVTSVLRGLVTACDYEAAQKLMEAENYSDYESFFRQMFEIARRHKIMNPEKMRTEYGKLIYLLQDAVSPTVMPHLGFSVKGPIESVYKFLEERGGLGLLSDELIETATIEILALGRPRSVIDTEIRKKERAVILLKRKYQTSRLSQDDIHLCLYSICDNNSFLNSNRVPIDKIIDFLKSNFSPNKI-EEGYSLSIVSGEAGSRLSHSHERQFYYA----LQSLTLWRDIIDDMFRLWAMAEEDLLSESVTYSLQDTGQGMQRVQQSPRAYRAMQEVLNRVRNSVGHWVGSSVVHMGDHNVPNALSFIDKYTQVPRILGPIISCLENLERICKDDEGILSMINNGFGGVEKLRKDILYDFFRSAFDGSGSDLWYDAGSCVDGRLTSAWNWCSQLQEKPFYPIFKLTGFTGFDGDFK 838          
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1753.1 vs. uniprot
Match: A0A7S2XMA5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMA5_9STRA)

HSP 1 Score: 572 bits (1475), Expect = 1.980e-195
Identity = 284/471 (60.30%), Postives = 359/471 (76.22%), Query Frame = 1
Query:  352 SFSERSKYIPVRLTSDERRYLRLVESVISVTDYTGKVDADFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDE---RGYNEHEGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLREKGGLAILSDPNVEIATREVLANGRPRPQITKDIRRKETAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARLASLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQ 1755
            S  ERSK+IP+RL+  ER+ LRLVE++++  DYT  VD  F +A++R+H  LK +   L G+V A DY  G  + D+     + + E FF  + EIARRHKIMNPEKMRTEY KLIYL+QDAVSP     L+ + K  +++VY+FL  +GGL +L DP +E+AT+E+LA  + R  I ++IRRKE AV++IK  +   NL+ DDIH CLYS+CDN+SFLNSNRVPIDK+I +L++ F+P    D+ YSL+I +G+ GARL+HSH RQY FA    L SL+LWRDI+ DMFRLW   EEDLLSE+  Y L DTGQG QRVQ SP+T+KAMQ+IL   Q  ++ W+GS VIHLGDHNVPNAL FIDKYTQV RILGPIVSCLE L  +Y+ D+ I+ +ID G+GGLE L+KDIL+DFFRSAFDGSGADNF+DAGSCIDGR+TSAW+WCSQL SKPF+ +F+LTGFT FDGEF+
Sbjct:  129 SVKERSKFIPLRLSIGERKMLRLVEAIMTCCDYTTDVDRLFKNAARRTHAQLKSVMAVLRGMVTACDYAAGQKLCDDDDDNHFTDFEPFFCQMFEIARRHKIMNPEKMRTEYGKLIYLLQDAVSPTVAPHLSFSCKGPIETVYKFLEARGGLGVLDDPLIEVATQEILAEKKTRANIDEEIRRKEMAVSKIKSSHRNTNLTSDDIHLCLYSICDNNSFLNSNRVPIDKVIGYLQESFAPGNI-DEGYSLSIVSGQDGARLSHSHERQYYFA----LQSLSLWRDIVDDMFRLWHFAEEDLLSETITYSLKDTGQGMQRVQQSPRTYKAMQQILVRVQGKMKQWIGSGVIHLGDHNVPNALSFIDKYTQVPRILGPIVSCLENLERIYENDDGIKEMIDDGFGGLECLKKDILYDFFRSAFDGSGADNFYDAGSCIDGRMTSAWHWCSQLPSKPFYSIFKLTGFTGFDGEFK 594          
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1753.1 vs. uniprot
Match: A0A7S3VBK2_9STRA (Hypothetical protein n=4 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBK2_9STRA)

HSP 1 Score: 579 bits (1492), Expect = 5.110e-194
Identity = 282/468 (60.26%), Postives = 363/468 (77.56%), Query Frame = 1
Query:  352 SFSERSKYIPVRLTSDERRYLRLVESVISVTDYTGKVDADFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDERGYNEHEGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLREKGGLAILSDPNVEIATREVLANGRPRPQITKDIRRKETAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARLASLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQ 1755
            S  ER+KYIP+RL+  ER+ LRLVE+ ++  DYT + D  F S+++R+H  +K I+  L G+V A DY  G  +++E  Y+E+  FF+ + EIARRHKIMNPEKMRTEY KLIYL+QDAVSP  Q  L  + K  +++VY++L E GG+ +L DP +E+ATREVLA  + R QI+ +IRRKE AVA +K+ Y + +LS ++IH CLYS+CDNDSFLNSNRVP+DK+I +LE++FSP T  ++ YSL+I +G+ G+RL+HSH RQY FA    L SLTLWRDI+ DMFRLW + E DLLSES +Y L DTGQG QRVQ SPQT+K+MQ+IL   Q  V+ W+GS+VIHLGDHNVPN+L FIDKYTQV RIL PIV+CLE +  + ++D  ++  ID G+GG+E LRK IL+DFF+SAFDGSGADNF+DAGSCIDGRLTSAWNWCSQL  KPF+ +F+LTGFT FDGEF+
Sbjct:  417 SVKERAKYIPLRLSMGERKMLRLVEAAMACCDYTTETDKPFKSSTRRTHAQMKHISSVLRGMVTACDYAAGQILLEEDNYSEYAKFFRQMFEIARRHKIMNPEKMRTEYGKLIYLLQDAVSPSIQPHLAFSCKGEIETVYKYLEENGGVKMLEDPLIEVATREVLAGKKSRSQISNEIRRKERAVAHLKQHYRSQHLSSENIHLCLYSICDNDSFLNSNRVPVDKVIGYLEQFFSP-TKIEEGYSLSIVSGQDGSRLSHSHERQYYFA----LQSLTLWRDIIDDMFRLWAMAESDLLSESVSYALQDTGQGFQRVQQSPQTYKSMQKILSRVQGKVKQWIGSNVIHLGDHNVPNSLTFIDKYTQVPRILSPIVTCLENVEKICEEDNGVKAFIDNGFGGVEQLRKGILYDFFKSAFDGSGADNFYDAGSCIDGRLTSAWNWCSQLQDKPFYCIFKLTGFTGFDGEFK 879          
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1753.1 vs. uniprot
Match: A0A7S2V695_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V695_9STRA)

HSP 1 Score: 566 bits (1458), Expect = 1.880e-192
Identity = 302/590 (51.19%), Postives = 386/590 (65.42%), Query Frame = 1
Query:  100 CEECEDRRPVWDCKQGCGGVFCDVCFYALHRKGKRALHKPEKIERPGAATGNCG--------------------------------PAAGK----GLSGWIGPRLPPRKEEAHPDMYDRKSFSERSKYIPVRLTSDERRYLRLVESVISVTDYTGKVDA-DFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDERGYNEHEGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLREKGGLAILSDPNVEIATREVLANGR-PRPQITKDIRRKETAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARLASLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQ 1755
            CEECED      C+  C G FC +CF  LHRKGKRA H+P+    P A                                      PA  +      +G +G          +PD+       ER+KYIP+RL+ +ERR+LRL+++ ++V DYT +VDA DF + ++R HL + ++   L+G+V ++ Y++G  +   R +  +E  FQD  EI RRHKIMNPEKMR EY K+IYL+QDA        L  + KR V +VY  L +     +L DPN+E+AT E+L +    R +I + I+RK   V    + YA+  +S +D+  CLYS+CDN SFLNSNR+PIDKMI +L KYF PD   ++ Y LAIS+GEGGARLTHSH RQYNF     L SL LWR+I++DMFRLW L EEDLLS++ +Y+L DTGQG+QRVQNSP+TFKAMQEIL+  Q  + SWVGSSVIHLGD NVPNAL FIDKY QV+RIL PIV+ LE +  +  +D  I   I+ G+GGL  LRKDILFDFF+ AFDGSGADNFFDAGSCIDGRLTSAWNWC+QL+ KPF+P+F+LTGFT FDGEF+
Sbjct:   50 CEECEDNPSALVCEL-CEGYFCSLCFQILHRKGKRAGHEPKPFTIPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPPATARDAVLAAAGGVG---------LNPDLSQYAKMRERAKYIPLRLSYEERRFLRLLQATLTVCDYTTRVDAHDFKAEAQRQHLQMSKLCHLLTGMVTSLSYRRGQELARSRDFQGYEELFQDAFEIGRRHKIMNPEKMRGEYGKMIYLLQDAQKNSED--LQFSCKRPVLTVYSLLEDAKAAKMLDDPNIELATEEILPDPNVSRAEIQQRIKRKNRLVEAFAKTYASRRISAEDVRLCLYSICDNKSFLNSNRLPIDKMIGYLRKYFRPDQ-WEEGYCLAISSGEGGARLTHSHERQYNFV----LQSLYLWREIVNDMFRLWYLAEEDLLSDTESYRLEDTGQGRQRVQNSPRTFKAMQEILYCTQVKLGSWVGSSVIHLGDRNVPNALTFIDKYAQVARILLPIVNTLELVEKICKEDSGISYYIEHGFGGLGKLRKDILFDFFQKAFDGSGADNFFDAGSCIDGRLTSAWNWCAQLSQKPFYPIFKLTGFTGFDGEFK 622          
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1753.1 vs. uniprot
Match: A0A7S2SFY1_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SFY1_9STRA)

HSP 1 Score: 559 bits (1441), Expect = 4.960e-190
Identity = 285/478 (59.62%), Postives = 359/478 (75.10%), Query Frame = 1
Query:  352 SFSERSKYIPVRLTSDERRYLRLVESVISVTDYTGKVDA-----DFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDERGYNEHEGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRIL-----NLNIKRGVKSVYEFLREKGGLAILSDPNVEIATREVLANGRPRPQITKDIRRKETAVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARLASLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQ 1755
            S  ERS YIP+RL+  ER+ LRLVE+ ++  DYT  VD      +  S +KR H IL+ IT  L GLVL+ D    +   ++ G  ++  FF+ + EIARRHK+MNPEKMRTEY KL+Y++QDAVSP  Q  L      L++   +++VY+FL E+ GLA+L+DP +E+AT E+LA  + R QI  +I+RKE AV  +K+ Y +  LS DD+H CLYSMCDNDSFLNSNRVPIDK+I +L+K+F+PD   +D YSL+I +G+ G+RL+HSH RQY FA    L SLTLWRDI+ DMFRLW + E DLLSES  Y L DTGQG QRVQ SP+T+K+MQ+IL   Q  V  WVGSSVIHLGDHNVPN+L FIDKYTQV RILGPIVSCLE L  + ++DE I+  I++G+GGLE L+KDIL+DFF+SAFDGSGADNF+DAGSCIDGRLTSAWNWCSQL +KPF+ +F+LTGF  FDGEF+
Sbjct:  142 SIKERSIYIPLRLSMGERKMLRLVEAAMTCCDYTTLVDDVNTNNNSKSVAKRIHTILRHITSVLQGLVLSCDSNANVE--EDDGDEDYSSFFRRLFEIARRHKVMNPEKMRTEYGKLVYMLQDAVSPTVQPNLPYCKSGLSLVSPMETVYKFLSERNGLAMLNDPLMEVATEEILAGKKSRSQINSEIKRKERAVLMLKQNYKSSQLSADDVHLCLYSMCDNDSFLNSNRVPIDKIIDYLQKFFAPDKI-EDGYSLSIVSGQDGSRLSHSHERQYYFA----LQSLTLWRDIIDDMFRLWAMAEGDLLSESVTYSLQDTGQGMQRVQQSPRTYKSMQKILSRVQSKVSQWVGSSVIHLGDHNVPNSLSFIDKYTQVPRILGPIVSCLENLERICEEDEGIEGFIESGFGGLERLKKDILYDFFKSAFDGSGADNFYDAGSCIDGRLTSAWNWCSQLPNKPFYCIFKLTGFIGFDGEFK 612          
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1753.1 vs. uniprot
Match: A0A7R9UCK5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCK5_9STRA)

HSP 1 Score: 550 bits (1417), Expect = 3.790e-186
Identity = 287/559 (51.34%), Postives = 384/559 (68.69%), Query Frame = 1
Query:   91 PEHCEECEDRRPVWDCKQGCGGVFCDVCFYALHRKGKRALHKPEKIERPGAATGNCGPAAGKGLSGWIGPRLPPRKEEAHPDMYDRKSFSERSKYIPVRLTSDERRYLRLVESVISVTDYTGKVDADFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDERGYNEHEGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRILNLNIKRGVKSVYEFLREKGGLAILSDPNVEIATREVLAN-GRPRPQITKDIRRKETAVAQIKRKY---ATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKYFSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARLASLTLWRDIMHDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHAQHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVLYDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCIDGRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQ 1755
            P  CEECEDR+ V +C   C G FC++C  +LHRKGKRA H+    E                      PR   R++    +   R++  ER+K+IP+RL   ER+ LR+VE+ +  +DY  +VD  F S +KR H+ LK I  FL GL  +V Y+ G  +++ER ++E+ GFFQ+ +EI RR+KIMNPEKMR EY KL+++MQDA+S +  ++L  ++K  +K+VY  L E   L +L DP +E AT+EVL +  R R +I  DI+RK  A+  + +KY   ++ +   + +  CLYS+ DN+SFLN+NR+P++KMI  LE YF+  T  ++ YSLAI  G  GARLTH+H RQ+NF  Q    SL LW +I+ D FRLW L EEDLLS + AY L DTGQG QRVQ  P+TF+AMQEILF     V SW+GSSV+HLGDHNVPNAL+FIDKY QVSRILGP+++ LEQ+  +YD+D   + L+D G+GGL+ + K+IL+DFFR AFDGSGADNF+DAGSCIDGRLTSAWNWCSQ+NSKP+ P+F+LTG   FDG+F+
Sbjct:   96 PSLCEECEDRKAVHECLD-CDGRFCELCLRSLHRKGKRARHRFCVFESDVKQA----------------PREIAREQVRAAE--GRRNMRERAKFIPLRLEYTERKLLRMVEAALRASDYVTEVDRPFASEAKRRHVQLKGICAFLCGLATSVQYEAGQRLLEERCFSEYAGFFQECMEILRRYKIMNPEKMRNEYGKLLFMMQDAMSGQIHQLLGFDLKGPIKTVYSRLEELDALEMLDDPLIETATQEVLPDRSRSRAEIQTDIKRKNRAIEILVKKYWRGSSRSEEAEAVRLCLYSIADNNSFLNANRLPVEKMIVKLEHYFNAQTV-EEGYSLAIQEGLQGARLTHNHERQFNFVKQ----SLKLWSEILLDFFRLWYLAEEDLLSGTVAYSLEDTGQGFQRVQQCPRTFRAMQEILFTVMDRV-SWIGSSVVHLGDHNVPNALVFIDKYAQVSRILGPVINTLEQMRRIYDEDPATEVLVDQGFGGLDKVEKEILYDFFRYAFDGSGADNFYDAGSCIDGRLTSAWNWCSQINSKPYVPIFRLTGNQGFDGDFR 629          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1287.1753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW41_ECTSI0.000e+098.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3Z0_9STRA6.180e-20863.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JV81_9PHAE1.990e-20292.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B5Y5N5_PHATC6.170e-19860.68Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JZ97_FISSO2.300e-19661.54Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2XMA5_9STRA1.980e-19560.30Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3VBK2_9STRA5.110e-19460.26Hypothetical protein n=4 Tax=Chaetoceros debilis T... [more]
A0A7S2V695_9STRA1.880e-19251.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2SFY1_9STRA4.960e-19059.62Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7R9UCK5_9STRA3.790e-18651.34Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1287contigE-siliculosus-1a_F_contig1287:22999..28971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1761
Model size1991
Exons10
Ec32 orthologEc-01_003290.1
Ec32 ortholog descriptionProtein of unknown function DUF2009
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs28J77@1,2QRJJ@2759
EggNOG free text desc.Protein of unknown function (DUF2009)
Seed eggNOG ortholog2880.D7FW41
Seed ortholog evalue0.0
Seed ortholog score1173.3
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927807.7121692-UTR-E-siliculosus-1a_F_contig1287:22998..232281622927807.7121692-UTR-E-siliculosus-1a_F_contig1287:22998..23228Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1287 22999..23228 -
1696318688.366124-UTR-E-siliculosus-1a_F_contig1287:22998..232281696318688.366124-UTR-E-siliculosus-1a_F_contig1287:22998..23228Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1287 22999..23228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927807.7230098-CDS-E-siliculosus-1a_F_contig1287:23228..233491622927807.7230098-CDS-E-siliculosus-1a_F_contig1287:23228..23349Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 23229..23349 -
1696318688.3761675-CDS-E-siliculosus-1a_F_contig1287:23228..233491696318688.3761675-CDS-E-siliculosus-1a_F_contig1287:23228..23349Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 23229..23349 -
1622927807.7323327-CDS-E-siliculosus-1a_F_contig1287:23714..239081622927807.7323327-CDS-E-siliculosus-1a_F_contig1287:23714..23908Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 23715..23908 -
1696318688.3844166-CDS-E-siliculosus-1a_F_contig1287:23714..239081696318688.3844166-CDS-E-siliculosus-1a_F_contig1287:23714..23908Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 23715..23908 -
1622927807.7430725-CDS-E-siliculosus-1a_F_contig1287:24294..244081622927807.7430725-CDS-E-siliculosus-1a_F_contig1287:24294..24408Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 24295..24408 -
1696318688.3935516-CDS-E-siliculosus-1a_F_contig1287:24294..244081696318688.3935516-CDS-E-siliculosus-1a_F_contig1287:24294..24408Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 24295..24408 -
1622927807.7528052-CDS-E-siliculosus-1a_F_contig1287:24635..247941622927807.7528052-CDS-E-siliculosus-1a_F_contig1287:24635..24794Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 24636..24794 -
1696318688.4027698-CDS-E-siliculosus-1a_F_contig1287:24635..247941696318688.4027698-CDS-E-siliculosus-1a_F_contig1287:24635..24794Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 24636..24794 -
1622927807.7669797-CDS-E-siliculosus-1a_F_contig1287:25090..252861622927807.7669797-CDS-E-siliculosus-1a_F_contig1287:25090..25286Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 25091..25286 -
1696318688.4144948-CDS-E-siliculosus-1a_F_contig1287:25090..252861696318688.4144948-CDS-E-siliculosus-1a_F_contig1287:25090..25286Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 25091..25286 -
1622927807.7768965-CDS-E-siliculosus-1a_F_contig1287:25558..256411622927807.7768965-CDS-E-siliculosus-1a_F_contig1287:25558..25641Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 25559..25641 -
1696318688.4276187-CDS-E-siliculosus-1a_F_contig1287:25558..256411696318688.4276187-CDS-E-siliculosus-1a_F_contig1287:25558..25641Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 25559..25641 -
1622927807.787289-CDS-E-siliculosus-1a_F_contig1287:25854..260641622927807.787289-CDS-E-siliculosus-1a_F_contig1287:25854..26064Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 25855..26064 -
1696318688.44006-CDS-E-siliculosus-1a_F_contig1287:25854..260641696318688.44006-CDS-E-siliculosus-1a_F_contig1287:25854..26064Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 25855..26064 -
1622927807.8029616-CDS-E-siliculosus-1a_F_contig1287:26660..268311622927807.8029616-CDS-E-siliculosus-1a_F_contig1287:26660..26831Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 26661..26831 -
1696318688.44815-CDS-E-siliculosus-1a_F_contig1287:26660..268311696318688.44815-CDS-E-siliculosus-1a_F_contig1287:26660..26831Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 26661..26831 -
1622927807.812806-CDS-E-siliculosus-1a_F_contig1287:27332..274981622927807.812806-CDS-E-siliculosus-1a_F_contig1287:27332..27498Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 27333..27498 -
1696318688.4568317-CDS-E-siliculosus-1a_F_contig1287:27332..274981696318688.4568317-CDS-E-siliculosus-1a_F_contig1287:27332..27498Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 27333..27498 -
1622927807.8251765-CDS-E-siliculosus-1a_F_contig1287:28624..289711622927807.8251765-CDS-E-siliculosus-1a_F_contig1287:28624..28971Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 28625..28971 -
1696318688.464423-CDS-E-siliculosus-1a_F_contig1287:28624..289711696318688.464423-CDS-E-siliculosus-1a_F_contig1287:28624..28971Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1287 28625..28971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1287.1753.1prot_E-siliculosus-1a_F_contig1287.1753.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1287 23229..28971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1287.1753.1

>prot_E-siliculosus-1a_F_contig1287.1753.1 ID=prot_E-siliculosus-1a_F_contig1287.1753.1|Name=mRNA_E-siliculosus-1a_F_contig1287.1753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=587bp
MDSDGDAAMANGGGGASADDEHCASGESSVPEHCEECEDRRPVWDCKQGC
GGVFCDVCFYALHRKGKRALHKPEKIERPGAATGNCGPAAGKGLSGWIGP
RLPPRKEEAHPDMYDRKSFSERSKYIPVRLTSDERRYLRLVESVISVTDY
TGKVDADFPSASKRSHLILKQITRFLSGLVLAVDYQKGMTMIDERGYNEH
EGFFQDVLEIARRHKIMNPEKMRTEYAKLIYLMQDAVSPEAQRILNLNIK
RGVKSVYEFLREKGGLAILSDPNVEIATREVLANGRPRPQITKDIRRKET
AVAQIKRKYATHNLSQDDIHTCLYSMCDNDSFLNSNRVPIDKMIAFLEKY
FSPDTPGDDAYSLAISAGEGGARLTHSHARQYNFAHQARLASLTLWRDIM
HDMFRLWCLGEEDLLSESFAYKLVDTGQGKQRVQNSPQTFKAMQEILFHA
QHGVQSWVGSSVIHLGDHNVPNALMFIDKYTQVSRILGPIVSCLEQLVVL
YDKDEHIQNLIDTGYGGLETLRKDILFDFFRSAFDGSGADNFFDAGSCID
GRLTSAWNWCSQLNSKPFFPMFQLTGFTSFDGEFQR*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1287:22999..28971-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1287.1753.1 ID=mRNA_E-siliculosus-1a_F_contig1287.1753.1|Name=mRNA_E-siliculosus-1a_F_contig1287.1753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5973bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1287:22999..28971- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACTCGGATGGTGATGCTGCGATGGCAAACGGTGGGGGGGGGGCATC GGCAGACGATGAGCATTGTGCTTCTGGCGAGAGCAGTGTCCCCGAGCATT GTGAAGAGTGCGAGGATAGGCGACCAGTGTGGGATTGCAAGCAGGGGTGC GGTGGAGTGTTCTGCGATGTTTGTTTCTACGCGCTGCACCGCAAGGGTAA AAGGGCCTTGCACAAGCCAGAAAAAATCGAGCGCCCGGGGGCAGCTACCG GAAATTGTGGGCCGGCAGCCGGGAAGGGGCTGAGCGGGTGGATTGGGCCG CGGTTGCCTCCACGAAAGGAGGAGGCGCATCCCGACATGTATGATAGGTC AGCACCAGTGTTGTGGGTATCCTGCTAGTGTTGTTGTCCGGCCTGTGGAT GAACAATGTGACGGCAAGCGTCTCGGGTGTATGTAGTACTGCTGTTGCTG GAGCAGAAAATAAATGTATAGTGTTGATTGATTGTTCTTTTTCAGGGAGA CCGACCGATGCCAACGCACGATCTACAGGAGCGAAGTTGCGTACCAGGCA GGTAGTGGGTGCAGTGTACATCGGCGCTTTATGGGCCAGTGCACGCTATG ATAACTCCTTGCAACAATTTGGGTCAGGGAGAAACAACCCTCTCGGTGTG GAGAGGGGGTGTATCGCTTGATGCAAAACGGATCACCGAGTCTCGTTGAG GATAGGGGAAGCGAACGGGAAGGGACTGCTGGTTCCCTCTCGCGATGACA AGATACGGCAGTAGGGTCAAGCTCCCATTAGGGTGGTGACAAGCCCTGCA TGCCCTGCCCTCCGTGCGAACCCGTGCTGATGTTGCATATGCCGAATGGT GTCGTCTGACGAAAGTAATAGATGGGGTGACAACACACACATCTTCATAT ACCATGGTATAGAAATAGGGTAACAGCAGACCGCGGCGATTGAAGAAGAC AACACTTGGCATGTGAATCGAGACAAGGTTACGCCCCTCGACTAAATACG GTCATGACGAACTCAAACGAGCCCGTGTTTCCCATCCCCACGAAGGTGAT TGTTGGTTGTACCCCCAGTTGGACCCAGCGTTTCATGGCCCAGAGTCGGG AACATCACCATACACAGCAATCTCAGCACCTCTGGGATCAAGTCACGCAT GGCCTGGCACCCTCCTTTGATGAGGCAACTGCAGTACCGAGGCACACCGT TGTCTCTCACTCCAAGCACTGCTATAGTTTGCTATCAAACCCAGTATCAT CCAAGGATGCCTCCACATCAGGGAGTCGATATTTTTCTTGTCGTATCGCG ACACCACACCGTCTTGACGGCCCTCACCTCATATTTCTTTACCTGCCATT TGGCAATACACGGTTCTTTCACCTTCACTACAGTTGACATCACGAAGCAG TGGCATGCATTGACCTCTACCGCCCGCCGCCGCCCACAACTGCGGTACCC ACATGATCGTGTGTATGCTCCAGAAAATCTTTCTCCGAGAGGTCCAAGTA CATTCCGGTGCGACTGACTTCCGACGAGCGCCGCTACTTGCGACTGGTGG AGTCGGTCATCTCTGTCACGGACTACACTGGGAAGGTCGATGCCGACTTC CCTTCGGCGAGCAAGCGCAGCCACCTCATCCTCAAGCAGGTGGGTGAAAC ATTTCTCGTCGGCTATCAGCGTTTCTATTCTGTTTGCTGTTGTGCCCTAT TTAGCAGGCAGCCTCTGCTCTTGGGAAGCACGATGCACCCCTTCGCTAGA CAAACGGCATATTCATCTGTTGTCAATCTTAGACGTGCGGTCCCATATGG CACAATATTTTCACAGCCGGAGCCCACATTTCACTCGCGGTTCCTTTACA CACACATGCGCGTGTATACGCGAAGGTGCTCTGCAATCTGTTATGTATGT TGATTTGCCATGTACTCAGTTCTGGCACTTCCGGCCTCGTCCGTGCGACA TCGGTAGTGTACGTAGTTGAGAAAATCAATACCGAGTCTTACAGCCCAAA AATTCTTGAGATTCTTGAGAAAGATTACCAATCAATACTTAGACTTTCTC CGACCGTGGCGTCATTGGTGTGTTCCAAGTGGTTTCCCCTCGTTTACGTT GCACCTACCGTACTTGTTGTCGGGGCTGCTTGTTGTTCAGATCACGCGGT TCTTGAGCGGGCTGGTGCTTGCGGTAGACTACCAGAAGGGCATGACGATG ATCGACGAGCGAGGGTACAACGAGCACGAGGGTTTTTTCCAGGACGTGCT GGAGATCGCTCGAAGACACAAGATTATGAACCCCGAGAAGATGCGTACGG AATACGCTAAGGTGACTGCTTTGGGAGAGGATGATGGGTTTAAGATTAAA GTGCTGGGGTGACCTCTGTGTGCGTGCACGCGCGTCCAATATGTCGGAAG AGACGATCTTCGGAAGTAACAGTATACCCAAGATCCTTTTGGATTCTGGA GACTCCTCACGAATATGCATCACCTCTTGTGGCGCCGCTTGCTGGCATAT TTGCGGGCAAAATTGGTGGCATGGGAACGCTGCTTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTGTTGGCTCTTTTTCCCTGCCTTGTTTTCGGCTG TGCATGCGGACAGCGATAAATGGCAGCCTGGGTCGCAAGACAACCTGTGC CCGTGTGGCTGGGAAAGCGCGCACAGAAAACATCTTATCTAGACTATGGT CGGGGTGTTGGATTTCCGTATGACTTGTCTCCACCATGTGGGAGTCGCAC GTCCTTTTTACCACTCTTGAGTTTCAGACGGGAGTGAGGAGTGAGTAGCC GTGTGCTGAGATTCACAACTCTCCCACTGGGCACCAACAAGATCTATATC CATGCGATTTTGATATAAACTTCTTGTATGTTGCCCTTGTTTTTTCCTGG CTCGCAGCTGATCTACCTGATGCAAGACGCGGTATCCCCGGAGGCGCAGC GTATCTTGAACTTGAACATCAAGAGAGGAGTGAAGTCGGTGTACGAGTTC TTGAGGGAAAAGGGAGGCCTGGCGATTCTTAGCGATCCGAACGTGGAGAT TGCGACAAGGGAGGTCTTGGCGAACGGCAGGCCACGACCGCAGATCACCA AGGACATTAGGAGGAAGGTGTGATGTGCAAGATATGTGTCAGTGTGGGGG GCGTGAAGGGCCCCATTCGACAACATGTTGCCTGTCTTGATAATTGTGAA GATTTTCCTGGCGTGCTTCATGTTTAGGCAGAACCACGTTGGCGTGAAAG CTCTTTTTCGTGCTCAATTTCGTCATGCCTAAAGTAGACCCCTCCTGGTT TCCCGTGGTGTGATATTTCACGCCTCTCAGGAGACAGCGGTGGCGCAGAT CAAGCGGAAGTATGCCACCCACAACCTTTCACAGGATGACATCCACACCT GCCTCTACAGCATGTGAGTGATGCCTGCTCACGCCCGGCGAAACCGGCCT TGAGAACGTGCAGTGTACCTCTGGATGTGGTGGTCAATTCGGAGGAATGC GGTTCGTATACATCAATCATGTCTTGCTAGGATGTTGTCAGTCTGCTGAG GGCATGGATGTCTCTTCCAGTGACGCCGCTGCGATTAAAACGCGGCCACT GCTTCTACCGTATCACGCCCGACCCCGCTGTTGTCGAACGCCATCACACC AGACCGGCTCACTTGTATTCTACTGTTTATTACAGGTGCGACAATGACTC CTTTCTCAACTCGAACCGTGTGCCCATCGACAAGATGATAGCGTTTTTGG AGAAGTACTTCTCCCCGGACACTCCGGGAGACGACGCTTACTCCCTGGCC ATCTCAGCCGGAGAGGGCGGGGCGCGCTTGACGCACTCCCACGCGCGACA GTACAACTTTGCGCATCAGGCAAGGCTGGCTGTGCCTCACTAGTCGCCGT GTTTTCAGTGTGGAAGCGTTGAAAGAGCAGCGTGAAAGCGCCGTCGTTTT AATCGTCGTATATATGGACCATTTGCGCTGAGTACATGGTGTTGGGGAGT GGGGAGGATGCTGGGTTCACCCCGCGTGTTTACGTGTATCGATGTGTGCA CAGGTGCGTCGCTGCGATTGTCCACTTGCATGGTTCACTTTGCGGCACAA CGGCCATTTGTTTTCTCATGTCAACGCTCAATCGCGCCGCCGCCGTCCTT GTCCGCTTTCCTGCATGTTTTGAACAGTCGCTGACGTTGTGGCGAGATAT CATGCACGACATGTTTCGACTGTGGTGCTTAGGGGAGGAAGACTTGCTCT CCGAAAGCTTTGCTTATAAGCTAGTGGACACGGGGCAAGGGAAACAACGG GTGCAGAACAGCCCCCAGACCTTCAAAGCGATGCAGGTACAACGTTGTGT TCGGCTTTCCTGGCACGCGTTTAGTGCTGGCCACCCTCGTGTTATACACG TTTAGTGCTGTTTCCCAAGTCACTCGTTGCTCGGAAGCATGTTATGCGCG CGTTAATTCGTTGGGCAGTCTGCAGGCATTTGCGCCCTTGCTCCGAAGAA GGCAGACCTTCTCTCGTTGCCTGTCCATCTAATAGTGTTGCTGATGTTGT CGCATCGCCGCAGGAGATCCTGTTCCACGCCCAGCATGGGGTACAGAGCT GGGTGGGGAGCAGCGTCATCCACCTGGGCGACCACAACGTACCGAACGCC CTGATGTTTATCGACAAGTATACCCAGGTGCGTGTGCCTGCACCTTGATC TGCGGTAGATATTTGTTAAGTTAGCTACCTGAGATCAGAAGCCCGCATCA GAGGTGGTTTTCATACTCCGACGAATGGCGCCAGCTGATGATATCATAGA ACACCGTTGCGACATTGGCCGGTTTGTCTGGGGTTTTTTTCCAAGAGTTC GCGGAATTCGGTGTCAACAGCAGTGCTAAATTCGGTGGCGCGAACAAAAG GGCACTTACCGGAAGGGGCTAGCGAGATGTCGTGGAGAAGGGCAAATGTG TTTTGTCTGTTGATTCATGAAAATAGCGTTCTGTCGCGAATAAGTCACCG CGGGTGCCGAGGAAGCAAGCGTGACGATCCCCCTTCCCGCCGCCGCCGCA ACAATTGGCGTAGGTTTCGCGCATCCTGGGCCCCATCGTGTCGTGCCTGG AGCAGCTTGTCGTGCTGTACGACAAGGATGAACACATCCAAAACCTGATC GACACTGGCTATGGCGGGCTTGAGACGCTGAGGAAGGACATTCTGTTCGA CTTTTTTCGATCGGCTTTCGACGGCAGCGGTGCCGACAACTTCTTCGACG CCGGCAGGTATGATGCAAGATCTGAGCGCGTTCAGTTTTCTTGTCGCCTC TCTCCGCTCGCAGCTCAGATATCTGTTTAGTTCAATTGCCCTTGTGCGTT GTTTCCCCGTTTATCGCGTCAGACATGCTCAGGTAGCATGTCATCCGTGT GCGCGCGACTTCGCGACTGCTGGTGATACACTCTCAAAGAAAGGACACCA GCTACGCAGCGTGCTACGGTTCTTTGCCTATGTTGACGCAGGTTCTTTGT GTTTTCGTGTGGCTAGTACATTCGTTGCCTCCACTCTCTCGAGGACGCGT GGTCAATGGTCTAACCGCTCAAGGCATGCCAAAGTACCTCCCCCCCCCCC CGCGAACTGCTTTGTTTTTCAGTTGCATTGACGGCCGGCTGACCTCGGCA TGGAACTGGTGCTCCCAGCTGAACTCGAAGCCGTTCTTCCCGATGTTCCA GCTCACGGGCTTCACCAGTTTCGATGGAGAGTTTCAGCGTTGAAGAGACC GTTAGAAATTCGCCGTTTATTCGATTTTCACCGAACTGGGGGAGCAAGTA TCCCCATTTGGATCTGGGGCCGTGTGGTGGTGGTGGAGGTGTTCACAAGT GAAGATGTGTGGAACATTTTTTATGACAGTGGTCGAGGGTGAAATTGGCC GTTGATAGGTCAAAGATGCGAGGTTTCCGGTTGCCTTTTTCGAAGAAAGA ACGATGCACACAAACCAATGCAC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1287:22999..28971-

>mRNA_E-siliculosus-1a_F_contig1287.1753.1 ID=mRNA_E-siliculosus-1a_F_contig1287.1753.1|Name=mRNA_E-siliculosus-1a_F_contig1287.1753.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3522bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1287:22999..28971- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACTCGGATGGTGATGCTGCGATGGCAAACGGTGGGGGGGGGGCATC
GGCAGACGATGAGCATTGTGCTTCTGGCGAGAGCAGTGTCCCCGAGCATT
GTGAAGAGTGCGAGGATAGGCGACCAGTGTGGGATTGCAAGCAGGGGTGC
GGTGGAGTGTTCTGCGATGTTTGTTTCTACGCGCTGCACCGCAAGGGTAA
AAGGGCCTTGCACAAGCCAGAAAAAATCGAGCGCCCGGGGGCAGCTACCG
GAAATTGTGGGCCGGCAGCCGGGAAGGGGCTGAGCGGGTGGATTGGGCCG
CGGTTGCCTCCACGAAAGGAGGAGGCGCATCCCGACATGTATGATAGATG
GACTCGGATGGTGATGCTGCGATGGCAAACGGTGGGGGGGGGGCATCGGC
AGACGATGAGCATTGTGCTTCTGGCGAGAGCAGTGTCCCCGAGCATTGTG
AAGAGTGCGAGGATAGGCGACCAGTGTGGGATTGCAAGCAGGGGTGCGGT
GGAGTGTTCTGCGATGTTTGTTTCTACGCGCTGCACCGCAAGGGTAAAAG
GGCCTTGCACAAGCCAGAAAAAATCGAGCGCCCGGGGGCAGCTACCGGAA
ATTGTGGGCCGGCAGCCGGGAAGGGGCTGAGCGGGTGGATTGGGCCGCGG
TTGCCTCCACGAAAGGAGGAGGCGCATCCCGACATGTATGATAGAAAATC
TTTCTCCGAGAGGTCCAAGTACATTCCGGTGCGACTGACTTCCGACGAGC
GCCGCTACTTGCGACTGGTGGAGTCGGTCATCTCTGTCACGGACTACACT
GGGAAGGTCGATGCCGACTTCCCTTCGGCGAGCAAGCGCAGCCACCTCAT
CCTCAAGCAGAAAATCTTTCTCCGAGAGGTCCAAGTACATTCCGGTGCGA
CTGACTTCCGACGAGCGCCGCTACTTGCGACTGGTGGAGTCGGTCATCTC
TGTCACGGACTACACTGGGAAGGTCGATGCCGACTTCCCTTCGGCGAGCA
AGCGCAGCCACCTCATCCTCAAGCAGATCACGCGGTTCTTGAGCGGGCTG
GTGCTTGCGGTAGACTACCAGAAGGGCATGACGATGATCGACGAGCGAGG
GTACAACGAGCACGAGGGTTTTTTCCAGGACGTGCTGGAGATCGCTCGAA
GACACAAGATTATGAACCCCGAGAAGATGCGTACGGAATACGCTAAGATC
ACGCGGTTCTTGAGCGGGCTGGTGCTTGCGGTAGACTACCAGAAGGGCAT
GACGATGATCGACGAGCGAGGGTACAACGAGCACGAGGGTTTTTTCCAGG
ACGTGCTGGAGATCGCTCGAAGACACAAGATTATGAACCCCGAGAAGATG
CGTACGGAATACGCTAAGCTGATCTACCTGATGCAAGACGCGGTATCCCC
GGAGGCGCAGCGTATCTTGAACTTGAACATCAAGAGAGGAGTGAAGTCGG
TGTACGAGTTCTTGAGGGAAAAGGGAGGCCTGGCGATTCTTAGCGATCCG
AACGTGGAGATTGCGACAAGGGAGGTCTTGGCGAACGGCAGGCCACGACC
GCAGATCACCAAGGACATTAGGAGGAAGCTGATCTACCTGATGCAAGACG
CGGTATCCCCGGAGGCGCAGCGTATCTTGAACTTGAACATCAAGAGAGGA
GTGAAGTCGGTGTACGAGTTCTTGAGGGAAAAGGGAGGCCTGGCGATTCT
TAGCGATCCGAACGTGGAGATTGCGACAAGGGAGGTCTTGGCGAACGGCA
GGCCACGACCGCAGATCACCAAGGACATTAGGAGGAAGGAGACAGCGGTG
GCGCAGATCAAGCGGAAGTATGCCACCCACAACCTTTCACAGGATGACAT
CCACACCTGCCTCTACAGCATGAGACAGCGGTGGCGCAGATCAAGCGGAA
GTATGCCACCCACAACCTTTCACAGGATGACATCCACACCTGCCTCTACA
GCATGTGCGACAATGACTCCTTTCTCAACTCGAACCGTGTGCCCATCGAC
AAGATGATAGCGTTTTTGGAGAAGTACTTCTCCCCGGACACTCCGGGAGA
CGACGCTTACTCCCTGGCCATCTCAGCCGGAGAGGGCGGGGCGCGCTTGA
CGCACTCCCACGCGCGACAGTACAACTTTGCGCATCAGGCAAGGCTGGCT
GTGCGACAATGACTCCTTTCTCAACTCGAACCGTGTGCCCATCGACAAGA
TGATAGCGTTTTTGGAGAAGTACTTCTCCCCGGACACTCCGGGAGACGAC
GCTTACTCCCTGGCCATCTCAGCCGGAGAGGGCGGGGCGCGCTTGACGCA
CTCCCACGCGCGACAGTACAACTTTGCGCATCAGGCAAGGCTGGCTTCGC
TGACGTTGTGGCGAGATATCATGCACGACATGTTTCGACTGTGGTGCTTA
GGGGAGGAAGACTTGCTCTCCGAAAGCTTTGCTTATAAGCTAGTGGACAC
GGGGCAAGGGAAACAACGGGTGCAGAACAGCCCCCAGACCTTCAAAGCGA
TGCAGTCGCTGACGTTGTGGCGAGATATCATGCACGACATGTTTCGACTG
TGGTGCTTAGGGGAGGAAGACTTGCTCTCCGAAAGCTTTGCTTATAAGCT
AGTGGACACGGGGCAAGGGAAACAACGGGTGCAGAACAGCCCCCAGACCT
TCAAAGCGATGCAGGAGATCCTGTTCCACGCCCAGCATGGGGTACAGAGC
TGGGTGGGGAGCAGCGTCATCCACCTGGGCGACCACAACGTACCGAACGC
CCTGATGTTTATCGACAAGTATACCCAGGAGATCCTGTTCCACGCCCAGC
ATGGGGTACAGAGCTGGGTGGGGAGCAGCGTCATCCACCTGGGCGACCAC
AACGTACCGAACGCCCTGATGTTTATCGACAAGTATACCCAGGTTTCGCG
CATCCTGGGCCCCATCGTGTCGTGCCTGGAGCAGCTTGTCGTGCTGTACG
ACAAGGATGAACACATCCAAAACCTGATCGACACTGGCTATGGCGGGCTT
GAGACGCTGAGGAAGGACATTCTGTTCGACTTTTTTCGATCGGCTTTCGA
CGGCAGCGGTGCCGACAACTTCTTCGACGCCGGCAGGTTTCGCGCATCCT
GGGCCCCATCGTGTCGTGCCTGGAGCAGCTTGTCGTGCTGTACGACAAGG
ATGAACACATCCAAAACCTGATCGACACTGGCTATGGCGGGCTTGAGACG
CTGAGGAAGGACATTCTGTTCGACTTTTTTCGATCGGCTTTCGACGGCAG
CGGTGCCGACAACTTCTTCGACGCCGGCAGTTGCATTGACGGCCGGCTGA
CCTCGGCATGGAACTGGTGCTCCCAGCTGAACTCGAAGCCGTTCTTCCCG
ATGTTCCAGCTCACGGGCTTCACCAGTTTCGATGGAGAGTTTCAGCGTTG
ATTGCATTGACGGCCGGCTGACCTCGGCATGGAACTGGTGCTCCCAGCTG
AACTCGAAGCCGTTCTTCCCGATGTTCCAGCTCACGGGCTTCACCAGTTT
CGATGGAGAGTTTCAGCGTTGA
back to top