mRNA_E-siliculosus-1a_F_contig1286.1747.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1286.1747.1
Unique NamemRNA_E-siliculosus-1a_F_contig1286.1747.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1286.1747.1 vs. uniprot
Match: D7G365_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G365_ECTSI)

HSP 1 Score: 541 bits (1394), Expect = 2.430e-191
Identity = 287/361 (79.50%), Postives = 305/361 (84.49%), Query Frame = 2 
Query:   41 NTEHHHPRAARSGRLDWST---------KASLGHKEEDVVNVGTVAMQMSRYGRVFGLSRECHSVAVFLEHTGVCRRTPKACATTTSSSRAPTAR*ALSGAFPGRRTFARSASRVPVAAASRALTDSWSAYR-ILALLAENSRVHHADAYIYGDHGWKVSAQEPMKEGWNAMVSPKYVRSLEENLNVDLGGLDCNTQAFEVLSELYAQLYDLHSDGLWTSLLLDISSFGGSADGPTLHNPNRDSWVRAAFVFGFKPVWLSCYCVV*RPGDKESAALDAGLTPARISEILGLDGGDSTATVQLAHLVGTGCDGDVEDVVNLADTLGLVETIELNADGSVEAVQLYAAADD*SIATRICKLDA 1093
            NT  ++   +  G   WST          +  G KEE V+NVGTVAMQMSRYGRVFGLSRE HSVAVF  +  + RRTPK CATTT+SSRAPTAR AL GAFPGRRTFARS SRVPVA ASRALT SW A   I+ALLAENSRVHHAD YIYGDHGWKVSAQE MKEGWNA+VSP+YVRSLEENLNVDLGGL+   QAF++LSELYAQLYDL SDGLWTSLLLD SSFGGSADGPTLHNPNRDSWVRAAFVFG KPVW+SCYCVV RPGDKESAALDAGLTP+RI EILGLDGGDSTATVQLA LVGTGCDGDVEDVV LAD LGLVETIELNADGSVEAVQL AAA+D  IATRICK+DA
Sbjct:   10 NTNPYYRTPSPQGCAQWSTGLEHESLLVHSHEGRKEEHVLNVGTVAMQMSRYGRVFGLSREDHSVAVFRTYRALERRTPKPCATTTNSSRAPTARRALGGAFPGRRTFARSPSRVPVATASRALTGSWRARTVIIALLAENSRVHHADEYIYGDHGWKVSAQEAMKEGWNAIVSPEYVRSLEENLNVDLGGLEGIIQAFDLLSELYAQLYDLRSDGLWTSLLLDNSSFGGSADGPTLHNPNRDSWVRAAFVFGVKPVWMSCYCVVQRPGDKESAALDAGLTPSRIREILGLDGGDSTATVQLADLVGTGCDGDVEDVVYLADALGLVETIELNADGSVEAVQLCAAAEDEPIATRICKVDA 370
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BLAST of mRNA_E-siliculosus-1a_F_contig1286.1747.1 vs. uniprot
Match: A0A7S4ID32_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ID32_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.300e-23
Identity = 83/230 (36.09%), Postives = 110/230 (47.83%), Query Frame = 2 
Query:  404 YRILALLAENSRVHHADAYIYGDHGWKVSAQEPMKEGWNAMVSPKYVRSL---------EENLNVDLGGLDCNTQAFEVLSELYAQLYDLHSDGLWTSLLLDISSFGGSADGPTLHNPNRDSWVRAAFVFGFKPVWLSCYCVV*RPGD-KESAALDAGLTPARISEILGLDGGDSTATVQLAHL------VGTGCDG--DVEDVVNLADTLGLVETIELNADGSVEAVQL 1039
            YR+LAL+AE  R   A  YIY D  W  + ++ MKEGWNA++   YV  L         E+   VD   L   TQAFEV S +Y  L++ H+DG WT LLL+          P   NPNRDSW  AA   GF    L  Y V   PGD ++S   D+  +  RI              V ++ L         G  G  DVED++ LA + G+++ + L  DG+V    L
Sbjct:   30 YRLLALIAEAGRTRTASNYIYDDESWIAAIRQVMKEGWNAILPADYVSGLCAALGIEEEEKEALVD-SKLRGTTQAFEVFSAVYGALWEAHADGFWTRLLLE----NVPKVMPEPSNPNRDSWEMAAAHDGFNVERLYRYLV---PGDFRDSPPADSVKSGRRIRGAAAAAEDLRRPVVSVSELRAAYLNFSPGACGVEDVEDLIYLAQSYGMIKELVLEDDGTVRRFTL 251
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1286.1747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G365_ECTSI2.430e-19179.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4ID32_9STRA1.300e-2336.09Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1286contigE-siliculosus-1a_F_contig1286:3567..7550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size306
Model size1093
Exons4
Ec32 orthologEc-03_004670.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1286.1747.1prot_E-siliculosus-1a_F_contig1286.1747.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1286 6587..6892 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927806.280091-UTR-E-siliculosus-1a_F_contig1286:3566..38041622927806.280091-UTR-E-siliculosus-1a_F_contig1286:3566..3804Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1286 3567..3804 +
1696318687.7055068-UTR-E-siliculosus-1a_F_contig1286:3566..38041696318687.7055068-UTR-E-siliculosus-1a_F_contig1286:3566..3804Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1286 3567..3804 +
1622927806.2944114-UTR-E-siliculosus-1a_F_contig1286:5251..54121622927806.2944114-UTR-E-siliculosus-1a_F_contig1286:5251..5412Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1286 5252..5412 +
1696318687.7127843-UTR-E-siliculosus-1a_F_contig1286:5251..54121696318687.7127843-UTR-E-siliculosus-1a_F_contig1286:5251..5412Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1286 5252..5412 +
1622927806.310769-UTR-E-siliculosus-1a_F_contig1286:6483..65861622927806.310769-UTR-E-siliculosus-1a_F_contig1286:6483..6586Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1286 6484..6586 +
1696318687.7202601-UTR-E-siliculosus-1a_F_contig1286:6483..65861696318687.7202601-UTR-E-siliculosus-1a_F_contig1286:6483..6586Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1286 6484..6586 +
1622927806.3383055-UTR-E-siliculosus-1a_F_contig1286:6892..69071622927806.3383055-UTR-E-siliculosus-1a_F_contig1286:6892..6907Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1286 6893..6907 +
1696318687.737682-UTR-E-siliculosus-1a_F_contig1286:6892..69071696318687.737682-UTR-E-siliculosus-1a_F_contig1286:6892..6907Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1286 6893..6907 +
1622927806.355684-UTR-E-siliculosus-1a_F_contig1286:7280..75501622927806.355684-UTR-E-siliculosus-1a_F_contig1286:7280..7550Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1286 7281..7550 +
1696318687.7451715-UTR-E-siliculosus-1a_F_contig1286:7280..75501696318687.7451715-UTR-E-siliculosus-1a_F_contig1286:7280..7550Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1286 7281..7550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927806.3252714-CDS-E-siliculosus-1a_F_contig1286:6586..68921622927806.3252714-CDS-E-siliculosus-1a_F_contig1286:6586..6892Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 6587..6892 +
1696318687.727651-CDS-E-siliculosus-1a_F_contig1286:6586..68921696318687.727651-CDS-E-siliculosus-1a_F_contig1286:6586..6892Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1286 6587..6892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1286.1747.1

>prot_E-siliculosus-1a_F_contig1286.1747.1 ID=prot_E-siliculosus-1a_F_contig1286.1747.1|Name=mRNA_E-siliculosus-1a_F_contig1286.1747.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=102bp
MKEGWNAMVSPKYVRSLEENLNVDLGGLDCNTQAFEVLSELYAQLYDLHS
DGLWTSLLLDISSFGGSADGPTLHNPNRDSWVRAAFVFGFKPVWLSCYCV
V*
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mRNA from alignment at E-siliculosus-1a_F_contig1286:3567..7550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1286.1747.1 ID=mRNA_E-siliculosus-1a_F_contig1286.1747.1|Name=mRNA_E-siliculosus-1a_F_contig1286.1747.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3984bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1286:3567..7550+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAACGATACGCTACGTACCACTGTAGTACCAATCCGTAATACCGAAC
ACCATCACCCCAGGGCTGCGCGCAGTGGTCGATTGGATTGGAGCACGAAG
GCCTCCTTGGGGCACAAAGAGGAGGACGTGGTAAACGTCGGGACGGTCGC
CATGCAGATGTCCCGGTACGGGAGGGTTTTCGGGCTATCGCGCGAATGTC
ACTCGGTGGCGGTTTTCCTTGAACATACAGGTGTGTGCGTGTTTTTATTA
TTAGCATCGACCGCGCTAACCGGCTGACCAATGAAAAGACGTCAGTCTCA
GTGCGGTTGAAAACACAAAACACTTCTAAATGCCTTTAACTGGGAGCCCG
TGAGTATGTGTTGGGTGATTTGTTTTAGTTGTTTGCATCGACCGCCCTAC
TGGCTGACCGATGAATAGGCGTCAGTTTGTAGCGGGGAAAATAAAAAGCA
CCAAGACTTTCAAGTCAGAGGGTACGGGTTGTACCGGGAGGGGGGGCGCA
GGAGTTGGACGAGGGGCCATGTGTGTGTGTGTTGCTTCACTCTGCATCGA
CCGGTCACTATCGACTGTTCTTTGAATGGAACACGACTGCGGCATACTGT
TTGCGCTATGCACTGTAGGCAAAGCCAGATAGGACGAGAACAATGCACGC
ACAAAAACAAAATCGCGGTCACCACCTGGTTTTGCCGTGAAAGCAAATTG
CCACGGCAAACATCTCCGTCCCCGACGGTTTCGGCTTGATTCTCCAGGTG
TAGAGTACTCCGGCCGCTCTTGCGCCGGCGTGAACGAGATTAACTTCCGG
GGGATGGCCGAGTCTGTCTACATGGATCACCGACAGCTCACGTTCGACAG
CGCCTTCTGTCAGCTGGAAACCCTTGATGCAAAGATCATCGACGTGGTTT
CGGCAAGCCCTGGTGAAGCGGCTGTGTCCGATTCTCTCGGCAAGGTAAGG
CGGAACGTGTGTATCCAAAAGTTGTTGGACTTAACATCGCGTGTGCCCCA
TCAGCGCTTCCAGCTCTACCAGACGGCGTTCCTCTTTGTCTTTCCGTCAC
GAGCGCGACACACTGTCTTGCGAAAGCCGATCGAATCCTAGACTATGCGC
CACCCACCCGTGTGTACAGGTCCGTCATGCCCGTTCCGGCATGAGCTCTC
AGCTGGGTCTCTGCACTCGGACCGGCGGCAAGACTCACACGTGTTCGTCC
TGCGACGGGGGCGACTTGAAGGACTACACGGGAAGCTACCACGTTTCGAT
CTCTCTCCCTCACGAACCCGAAGGCTGGATCCTTTGCGACGAGACCGTGC
TGAAGGACAGCGCCACGTGCGCGGAGGACTACGTGAGGGCGAGCGGGGGC
ACAAAAGAGGCCGCAAGGGACGTTTGAGTGGACGCCCATATCGTATGTCT
GGGTATGCCTACACGTGTTCACGGAGACATGGAAATGTTGTACATATTGC
ATTATCATTCAAAACAAGTAACGGCGTGGATAACGGGCCCGCGCGTGCAT
TTTCGCCTCCACCATCATGAAGCCAATCGTTTTTCTTCGACAGCTCTGCG
TGCTGTCCCTCCGAGGCTTTGATATAGCCTTCCCTTTGGAACCTTGTTGC
GCAATTCTGTGGCCTGAAACCTCCGCACAGAACTTTGCCAACATGATCCA
GTGGATCGAGCCGCTATTGCTAGCGGTGATGGGAGCGTCGGACTCCGAAG
GCGTGTGCGACGACAACGAGTTCGTCGAGGGCTCCTACCGCACGATGAGC
TCTGAGTGGAGCGTTCCCGGGACGACGGACGTTCGCACGTTCGGCGTCAC
GAGTACCGGTCGCTGCAGCCAGCAGGGCTTTGACTGACTCCTGGAGGTGA
AGAGATTTCTCGAGTTTTACAGCTTTGATCTTCCTCTGACCACTTGCACA
ACTGACGGCCCGCTCGTGAGGAAACAACTGCATGTATGTTGAGCAAGACT
CAAATCCTCACAATGTCTACCAATTGAAAAACACGCGGTGCAGACGGACT
AGCCTAATTTCGTGCGTAAATTATGGTGCGCTCTCTGGAAAATCTGGGTC
TCGGTTAATGGTGAAGATCTTTCCTGTGAGCAGGCCGGCCGTGCCTAGGA
AGAGCAGACGAATATTTTTCAGAGGCGACGTGCGCGAAGGTCCCGAGACC
ATCTTTTCTTGTCTCCTGTACTCTCTCTTCGATCATGCCACCCCCTTTCC
TGGTAGTAACACGTTACGTTTCGCCTTCGCATTAAAATAAATGATCTCGT
CCCGTAGCGTGGAATACAGGGACAACGGCATGCCGAGGCCTGTTGTTTTA
GAACGGATGGACCTCTCGACCTCATCAGTTGCAACCTGTGCTCTGAACTC
AATTTTTTGCGTCAAAGCAAACACCCCACCAACGCACGCTCATCGTTGAT
GACATGTCTCGACACGGGAAACGCACGGCTCTCAGGTGGCTCCCCTCCGT
CAGCATCTCGCATTTTCGGCTGTACGACGGAGGGCATGGGCTCGGACATC
CGAACAAAGACTTCCTTGGACGAGCACTTCATGGCCCCGGGCACGCCGCT
GCCTCCGATGGACGTCGGATTTTGGTATCGAGATTCGCATCTTCGATAAC
TTTCCCCAGGAAAACCTGAAAGTGTTCGATCGGAGAGGAAACAACGCGCA
TCAATTCTGCCCATTGACATGCTTGATTCTTTTCTGTTATCCCCATTCAA
TTTCCTGCTGGCTCCTGCCTACCCTCGCGGTATTGCCGCCCAAACTGAAC
AGCCCTGACGTGGGATTTCCACAGAAGGTTGACCCCTGCTGTGAGTGCCT
GCACCGTTCACCCGAGAATGGTCCAGCCTTCCTTTTCCGTTACGCACATT
ATCGATTCTCCCCCTCACCGTCCCTCTTTCGTCCACGCCCCGCCTCCTTG
CCCGCGTCGACTCAGAGCGCATACCGCATACTTGCTCTCCTTGCCGAGAA
CAGTCGTGTCCATCATGCAGACGCGTACATCTACGGAGATCACGGGTGGA
AGGTGTCCGCCCAGGAGCCCATGAAAGAGGGGTGGAACGCCATGGTCAGC
CCCAAATACGTCCGCAGCCTGGAGGAGAACTTGAACGTGGACCTGGGTGG
CCTGGACTGCAACACCCAGGCGTTCGAAGTGTTGAGCGAGCTCTACGCCC
AGCTGTACGACCTCCACTCCGACGGCCTGTGGACGAGCCTCCTGCTGGAT
ATCTCGTCCTTCGGAGGGTCTGCGGATGGTCCTACCCTCCACAACCCCAA
CCGCGACAGCTGGGTACGTGCTGCATTCGTTTTCGGCTTCAAGCCTGTGT
GGTTGTCTTGCTACTGCGTGGTCTAGAGGCCAGGCGACAAGGTTCCTTGA
CTGAACGATACTCATTTTCCCGAAAAAATGTACATTGCTTGATGTTTCCA
CTGGGATGACACGGGTTCGAAACCAACATTCTTCTGAGTCACGCAGGTGT
TCTGCCGCTGGTCTGGATCCCAACAATTCTGGCTTGGTTCTTCCGGACAT
GGGTGTGTCCGGCTCAAACAAGGGACGAACACAAGAGAGCTGATAATGTA
ATCGACACCGCAGAGCACCAAGTCGAATTCCTGTCTGAGCTGCAGAACTC
CACAACCTGCGTTGCTTCCTCGGATGAAACCAAAACCTTAAGCTCACCCT
AGGCACCCAAGTGTGTCTTACCCATACCTCACCACTGTCTTGGCCCCATG
CCTTTGTTGAGCAGGAGAGCGCCGCCCTCGACGCGGGTTTGACGCCTGCC
AGGATCAGCGAAATCCTTGGTCTCGACGGGGGCGATTCCACCGCCACGGT
CCAGCTTGCCCACCTGGTCGGAACCGGCTGTGACGGCGACGTCGAGGACG
TCGTCAACCTGGCGGATACGTTGGGCTTGGTGGAGACCATCGAGCTCAAC
GCGGACGGATCCGTCGAAGCTGTCCAGCTCTACGCAGCGGCTGATGATTA
GTCCATCGCTACGCGCATTTGCAAGTTGGATGCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1286:3567..7550+

>mRNA_E-siliculosus-1a_F_contig1286.1747.1 ID=mRNA_E-siliculosus-1a_F_contig1286.1747.1|Name=mRNA_E-siliculosus-1a_F_contig1286.1747.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1286:3567..7550+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAAGAGGGGTGGAACGCCATGGTCAGCCCCAAATACGTCCGCAGCCT
GGAGGAGAACTTGAACGTGGACCTGGGTGGCCTGGACTGCAACACCCAGG
CGTTCGAAGTGTTGAGCGAGCTCTACGCCCAGCTGTACGACCTCCACTCC
GACGGCCTGTGGACGAGCCTCCTGCTGGATATCTCGTCCTTCGGAGGGTC
TGCGGATGGTCCTACCCTCCACAACCCCAACCGCGACAGCTGGGTACGTG
CTGCATTCGTTTTCGGCTTCAAGCCTGTGTGGTTGTCTTGCTACTGCGTG
GTCTAGATGAAAGAGGGGTGGAACGCCATGGTCAGCCCCAAATACGTCCG
CAGCCTGGAGGAGAACTTGAACGTGGACCTGGGTGGCCTGGACTGCAACA
CCCAGGCGTTCGAAGTGTTGAGCGAGCTCTACGCCCAGCTGTACGACCTC
CACTCCGACGGCCTGTGGACGAGCCTCCTGCTGGATATCTCGTCCTTCGG
AGGGTCTGCGGATGGTCCTACCCTCCACAACCCCAACCGCGACAGCTGGG
TACGTGCTGCATTCGTTTTCGGCTTCAAGCCTGTGTGGTTGTCTTGCTAC
TGCGTGGTCTAG
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