mRNA_E-siliculosus-1a_F_contig1284.1738.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1284.1738.1
Unique NamemRNA_E-siliculosus-1a_F_contig1284.1738.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1284contigE-siliculosus-1a_F_contig1284:26602..27021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size411
Model size422
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927804.7753198-UTR-E-siliculosus-1a_F_contig1284:26601..266101622927804.7753198-UTR-E-siliculosus-1a_F_contig1284:26601..26610Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1284 26602..26610 +
1696318687.000397-UTR-E-siliculosus-1a_F_contig1284:26601..266101696318687.000397-UTR-E-siliculosus-1a_F_contig1284:26601..26610Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1284 26602..26610 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927804.7939076-CDS-E-siliculosus-1a_F_contig1284:26610..270211622927804.7939076-CDS-E-siliculosus-1a_F_contig1284:26610..27021Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 26611..27021 +
1696318687.0104403-CDS-E-siliculosus-1a_F_contig1284:26610..270211696318687.0104403-CDS-E-siliculosus-1a_F_contig1284:26610..27021Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 26611..27021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1284.1738.1prot_E-siliculosus-1a_F_contig1284.1738.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1284 26611..27021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1284.1738.1

>prot_E-siliculosus-1a_F_contig1284.1738.1 ID=prot_E-siliculosus-1a_F_contig1284.1738.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1738.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=137bp
MQPSLRNASTPESLRCSFRRLERWPAVIMDPIAEASVNRQKVDCCTVDGP
RAKTDKRRRKLTLLVKKTMKEKHQRKMQGVNKDTPSLRTRLLVLPTLTLR
NTDVTPERTPHQMQPRTPVVMHLRNVLSDPSRFGSMQ
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mRNA from alignment at E-siliculosus-1a_F_contig1284:26602..27021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1284.1738.1 ID=mRNA_E-siliculosus-1a_F_contig1284.1738.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1738.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=420bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1284:26602..27021+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTGCCATGCATGCAACCGTCCCTTCGAAATGCGAGCACACCGGAGAGCCT
ACGATGCTCTTTTCGGCGCCTCGAGCGATGGCCAGCGGTCATCATGGACC
CCATTGCGGAGGCCTCCGTAAACAGACAAAAGGTAGACTGTTGTACGGTA
GATGGACCAAGGGCGAAAACAGACAAGAGGAGGCGGAAACTAACTCTTCT
CGTGAAAAAAACGATGAAGGAAAAACACCAAAGGAAAATGCAAGGGGTGA
ACAAGGATACACCGTCTCTGCGAACCCGGCTTTTGGTGCTTCCAACGTTA
ACGTTGCGCAACACTGACGTCACACCAGAACGCACACCACATCAGATGCA
ACCACGAACACCAGTAGTTATGCATCTACGTAATGTTTTGTCCGATCCGT
CGCGCTTTGGTTCGATGCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1284:26602..27021+

>mRNA_E-siliculosus-1a_F_contig1284.1738.1 ID=mRNA_E-siliculosus-1a_F_contig1284.1738.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1738.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=822bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1284:26602..27021+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCAACCGTCCCTTCGAAATGCGAGCACACCGGAGAGCCTACGATGCTC
TTTTCGGCGCCTCGAGCGATGGCCAGCGGTCATCATGGACCCCATTGCGG
AGGCCTCCGTAAACAGACAAAAGGTAGACTGTTGTACGGTAGATGGACCA
AGGGCGAAAACAGACAAGAGGAGGCGGAAACTAACTCTTCTCGTGAAAAA
AACGATGAAGGAAAAACACCAAAGGAAAATGCAAGGGGTGAACAAGGATA
CACCGTCTCTGCGAACCCGGCTTTTGGTGCTTCCAACGTTAACGTTGCGC
AACACTGACGTCACACCAGAACGCACACCACATCAGATGCAACCACGAAC
ACCAGTAGTTATGCATCTACGTAATGTTTTGTCCGATCCGTCGCGCTTTG
GTTCGATGCAGATGCAACCGTCCCTTCGAAATGCGAGCACACCGGAGAGC
CTACGATGCTCTTTTCGGCGCCTCGAGCGATGGCCAGCGGTCATCATGGA
CCCCATTGCGGAGGCCTCCGTAAACAGACAAAAGGTAGACTGTTGTACGG
TAGATGGACCAAGGGCGAAAACAGACAAGAGGAGGCGGAAACTAACTCTT
CTCGTGAAAAAAACGATGAAGGAAAAACACCAAAGGAAAATGCAAGGGGT
GAACAAGGATACACCGTCTCTGCGAACCCGGCTTTTGGTGCTTCCAACGT
TAACGTTGCGCAACACTGACGTCACACCAGAACGCACACCACATCAGATG
CAACCACGAACACCAGTAGTTATGCATCTACGTAATGTTTTGTCCGATCC
GTCGCGCTTTGGTTCGATGCAG
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