mRNA_E-siliculosus-1a_F_contig1284.1737.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1737.1 vs. uniprot
Match: D7G4D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D5_ECTSI) HSP 1 Score: 659 bits (1700), Expect = 4.920e-217 Identity = 776/1009 (76.91%), Postives = 785/1009 (77.80%), Query Frame = 1
Query: 70 MDHTRLPAMSARVLVLAAVVGSLWNLVGSFAFVTPVKTKPRLQLRSLAGGTTFVQPADQSRVRTAGVGWARSPIVRPPVIRLSSSSSVDDNDGKEAAGGGSPDALQREIDSIREARLTAGQIKVELDALGVSYVGLLEKAEYVLALAEARVSGGXXXXXQTGRAETGDGAAGEAPSAXXXXXXXXXXXAADGPEAGQPPSATEAGESMPAADDAVAEAKARLEEDAKAAAXXXRATEAKAEQXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXLXXKLXXXXXXXXXXXXXXXXXXXXXXXXEAARKAAEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATQAEKDAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPEPSAXXXXXXXXXGGEGVGEEVSTDPXXXXXXXXXXXXXXEEVVSPPLEEKEAPTTTPSETDEESAPASEXXXXXXXXXXXXXXXXXXXXXXETADTATEPGTPAPEPTEAAXPAPEGDAAXXATPPQVDEANGGDATDPTSEDDAGSETDAAXXXXXXXXXXXXXXXXXXGVDAQAAKIREARMTAGQIKAELDALGVSYVGLLEKSEFVMKLAEARVDGGGEAAGEGESSDAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGEDAADEVSAMRVSAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPPPSSXXXXXXXXXXXXXXXXXAQDKADAAYKDVEVKKMNNDPXXXXXXXXXXXXXXXXXXX-GMPGXXXXXXXXXXXMP---NMGGGGGGVNINDILSGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 3084
MDHTRLPAMSAR+LVLAAVVGSLWNLVGSFAFVTPVKTK RLQLRSLAGGTTFVQPADQSRVRTAGVGWARSPIVRPPVIRLSSSSS D NDGKEAAGGG PDALQREIDSIREAR+TAGQIKVELDALGVSYVGLLEKAEYVLALAEARVSGGXXXXXQTG AETGD XX XXXXAADGPEAGQPPSATEAGESMPAADDAVAEAKARLEEDAKA XXXRATEA+AEQXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXX L KL XXXXXXXXXXXXXXXXXXXXXX R A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D + A P+A E +EV EEVVSPP E+KEAP TPSETDE SA ASE XXXXXXXXXXXXXXXXXX TEPGTPAPE X GDAAX ATPPQVDE NGGDATDP XXXXXXXXXXXXXXXXXX VDAQAAKIREARMTAGQIKAELDALGV YVGLLEKSEFVMKLAEARVDGGG+AA EGESSDAV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AGEDAADEVSAMRVSAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPPPSS XXXXXXXXXXXXXXXX QDKADAAYKDVEVKKMN+DP XXXXXXXXXXXXXXXXX GMPGXXXXXXXXXXX NMGGGGGGVNINDILSGL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF
Sbjct: 1 MDHTRLPAMSARMLVLAAVVGSLWNLVGSFAFVTPVKTKTRLQLRSLAGGTTFVQPADQSRVRTAGVGWARSPIVRPPVIRLSSSSSGDGNDGKEAAGGGGPDALQREIDSIREARMTAGQIKVELDALGVSYVGLLEKAEYVLALAEARVSGGXXXXXQTGPAETGDXXXXXXXXXXXEVDTDXXXXAADGPEAGQPPSATEAGESMPAADDAVAEAKARLEEDAKAXXXXXRATEAQAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAELKEKLEAXXXXXXXXXXXXXXXXXXXXXXXXXRIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSMDPSGA-------------------------------PNAA----------EEKEDEV------------------EEVVSPPPEDKEAPPXTPSETDEASARASETPSPXXXXXXXXXXXXXXXXXXXXXXXXTEPGTPAPETXXXXXXXXXGDAAXAATPPQVDEVNGGDATDPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDAQAAKIREARMTAGQIKAELDALGVGYVGLLEKSEFVMKLAEARVDGGGKAALEGESSDAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------------------------------------------AGEDAADEVSAMRVSAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPPPSSSXXXXXXXXXXXXXXXXXQDKADAAYKDVEVKKMNSDPSGXXXXXXXXXXXXXXXXXXGMPGXXXXXXXXXXXXXXXXNMGGGGGGVNINDILSGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 887
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1737.1 vs. uniprot
Match: A0A6H5KUZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ2_9PHAE) HSP 1 Score: 394 bits (1012), Expect = 1.470e-116 Identity = 554/872 (63.53%), Postives = 567/872 (65.02%), Query Frame = 1
Query: 241 DQSRVRTAGVGWARSPIVRPPVIRLSSSSSVDDNDGKEAAGGGSPDALQREIDSIREARLTAGQIKVELDALGVSYVGLLEKAEYVLALAEARVSGGXXXXXQTGRAETGDGAAGEAPSAXXXXXXXXXXXAADGPEAGQPPSATEAGESMPAADDAVAEAKARLEEDAKAAAXXXRATEAKAEQXXXXXXXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXLXXKLXXXXXXXXXXXXXXXXXXXXXXXXEAARKAAEAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------ATQAEKDAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX-TPEPSAXXXXXXXXXGGEGVGEEVSTDPXXXXXXXXXXXXXXEEVVSPPLEEKEAPTTTPSETDEESAPASEXXXXXXXXXXXXXXXXXXXXXXETADTATEPGTPAPEPTEAAXPAPEGDAAXXATPPQVDEANGG---------------------------DATDPTSEDDAGSETDAAXXXXXXXXXXXXXXXXXXGVDAQAAKIREARMTAGQIKAELDALGVSYVGLLEKSEFVMKLAEARVDGGGEAAGEGESSDAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGEDAADEVSAMRVSAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPPPSSXXXXXXXXXXXXXXXXXAQDKADAAYKDVEVKKMNNDPXXXXXXXXXXXXXXXXXXXGMPGXXXXXXXXXXXMPNMGGGGGGVNINDILSGL 2742
D++RVRTAGVGWARSPIVRPPVIRLS SPDA QREIDSIREAR+TAGQIKVELDALGVSYVGLLEKAEYVLALAEARVS G Q G AETGDGAAGEA S X AADGPEAGQP SATEAGESMPAADDAVAEAKARLEEDAKAAA X TEA+A XXXXXXXX R XXXXXXXX XX XXXXXXXXXXXXXXXXXXXXXX EA R E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A QA KDAA XXXXXXXXXXXXXXXXXXXXXXXXXXXX T EPSA G E GEEVSTD EEVVSPPLEEKEAPTT PS T+E SAPASE +TA+ A AP P X XX +AT ++DDA + + GVD QAAKIREARMTAGQIKAELD LGVSYVGLLEKSEFVMKLAEARVDGGGEA GEGESSDAV XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXX PAGEDA DEVSAMR+SAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPPPSS XXXXXXXX AQDKADAAYKDVEVKKMNNDP XXX XXXXXXXXX XXXXXX NMGGGGGGVNINDILSGL
Sbjct: 20 DRTRVRTAGVGWARSPIVRPPVIRLSXXXXXXXXXXXXXXXXXSPDAFQREIDSIREARMTAGQIKVELDALGVSYVGLLEKAEYVLALAEARVSDGGGDGGQAGPAETGDGAAGEASSXXGETDTDAAAAAADGPEAGQPQSATEAGESMPAADDAVAEAKARLEEDAKAAAAAXXXTEAQA------------XXXXXXXXARRGAEELRARQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEEALRIEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQAAKDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSEPSAEGEKEEEK-GREVAGEEVSTD----TSVAPNAAEEKEEVVSPPLEEKEAPTTAPSGTNEASAPASESPSS------------------DTAEAAAAAQDTAPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETEATPAAADDDAEGQASGSG-----------------GVDEQAAKIREARMTAGQIKAELDVLGVSYVGLLEKSEFVMKLAEARVDGGGEAPGEGESSDAVEEEEGQASANEAGGEKSSDTXXXXXXXXXXXXXXXXXXXXXXXXDEGEPAVENKVSSEPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-------PAGEDATDEVSAMRISAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPPPSSSGDTXXXXXXXXGVSAQAQDKADAAYKDVEVKKMNNDPSGGSGXXXMPXXXXXXXXX---------XXXXXXXXNMGGGGGGVNINDILSGL 823
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1737.1 vs. uniprot
Match: D7G5D2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D2_ECTSI) HSP 1 Score: 134 bits (337), Expect = 6.660e-30 Identity = 98/217 (45.16%), Postives = 101/217 (46.54%), Query Frame = 1
Query: 1816 GVDAQAAKIREARMTAGQIKAELDALGVSYVGLLEKSEFVMKLAEARVDGGGEAAGEGESSDAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAGEDAADEVSAMRVSAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPPPSS 2466
GV A+AAKIREARMTAGQIKAELDALGVSYV LLEKSEFVMKLAEA E E + PAGEDAADE SAM VSAIK+ELDERGV YRGLFEKSEFVDLLVDARAKGITAPPPSS
Sbjct: 259 GVGARAAKIREARMTAGQIKAELDALGVSYVSLLEKSEFVMKLAEA----------EDEKKEKXEEAAS-------------------------------------------------------------------------------------------PAGEDAADEASAMLVSAIKEELDERGVRYRGLFEKSEFVDLLVDARAKGITAPPPSS 374
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1737.1 vs. uniprot
Match: D7G5M9_ECTSI (STI1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M9_ECTSI) HSP 1 Score: 115 bits (289), Expect = 4.650e-27 Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1
Query: 2905 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 3084
DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF
Sbjct: 26 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 85
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1737.1 vs. uniprot
Match: D7G5M8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M8_ECTSI) HSP 1 Score: 102 bits (253), Expect = 1.540e-21 Identity = 65/79 (82.28%), Postives = 69/79 (87.34%), Query Frame = 1
Query: 2320 EVSAMRVSAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGITAPPPSSXXXXXXXXXXXXXXXXXAQDKADAAYKDVE 2556
+VSAMRVSAIK+ELDERGVGYRGLF+KSEFVDLLVDARA+GITAPP SS XXXXXXXXX QDKADAAYKDVE
Sbjct: 18 QVSAMRVSAIKEELDERGVGYRGLFDKSEFVDLLVDARAEGITAPPLSSSGDTDGGAXXXXXXXXXXQDKADAAYKDVE 96
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1737.1 vs. uniprot
Match: A0A7S3JZ43_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZ43_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 6.830e-9 Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 2917 KMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDPEILAIIEELKGLF 3084
K P MEA QKA N + AA+ DV NG+SAMSKY DPEI+A + ELKGLF
Sbjct: 44 KAEGKPGMMEALQKAAQNPKLKAAVLDVQANGISAMSKYASDPEIMATLNELKGLF 99
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1737.1 vs. uniprot
Match: A0A7S2TYI6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TYI6_9EUKA) HSP 1 Score: 53.5 bits (127), Expect = 7.770e-5 Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 1
Query: 2296 PAGEDAADEVSAMRVSAIKKELDERGVGYRGLFEKSEFVDLLVDAR 2433
P ++ VS MRV IK+ELD GV YRGL E+SE+VDLLVD R
Sbjct: 12 PDLDETIQAVSKMRVKEIKEELDSFGVSYRGLLERSEYVDLLVDTR 57
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1737.1 vs. uniprot
Match: A0A7S0DDV7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DDV7_9EUKA) HSP 1 Score: 57.4 bits (137), Expect = 8.970e-5 Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1
Query: 2305 EDAADEVSAMRVSAIKKELDERGVGYRGLFEKSEFVDLLVDARAKGI 2445
E+A ++VS M++ IK ELDERGV Y+GL EKSE+V+LLV A+ I
Sbjct: 201 EEAKEQVSKMKIKEIKAELDERGVDYKGLLEKSEYVNLLVQAKVDNI 247 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1284.1737.1 >prot_E-siliculosus-1a_F_contig1284.1737.1 ID=prot_E-siliculosus-1a_F_contig1284.1737.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1737.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1006bp MDHTRLPAMSARVLVLAAVVGSLWNLVGSFAFVTPVKTKPRLQLRSLAGGback to top mRNA from alignment at E-siliculosus-1a_F_contig1284:18645..26145+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1284.1737.1 ID=mRNA_E-siliculosus-1a_F_contig1284.1737.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1737.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7501bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1284:18645..26145+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1284:18645..26145+ >mRNA_E-siliculosus-1a_F_contig1284.1737.1 ID=mRNA_E-siliculosus-1a_F_contig1284.1737.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1737.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6036bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1284:18645..26145+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |