mRNA_E-siliculosus-1a_F_contig1284.1735.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1284.1735.1
Unique NamemRNA_E-siliculosus-1a_F_contig1284.1735.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 554 bits (1427), Expect = 4.710e-195
Identity = 272/278 (97.84%), Postives = 273/278 (98.20%), Query Frame = 3
Query:  444 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDWDQCGGTTEVGYWEXXXXXXXXXXXXXXXXXXXXXLPDDYVPDEE 1277
            GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDG+AN ECFN YPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQL EGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEE WACADFAITPDGMANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDWDQCGGTTEVGYWEXXXXXXXXXXXXXXXXXXXXXLPDD VPDEE
Sbjct:  110 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAITPDGMANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDWDQCGGTTEVGYWEXXXXXXXXXXXXXXXXXXXXXLPDDNVPDEE 387          
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D7FZR0_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 6.340e-83
Identity = 136/265 (51.32%), Postives = 164/265 (61.89%), Query Frame = 3
Query:  444 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCR--EGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMA-NPTPA-----PTEPLADCLDPVGPYDQCGGED-------YEGSDCCREGYECTEMASCYSQCRPI-----------PGGCSEDWDQCGG 1160
            GQVLE  + M A+HWGH+EFFICNAD   DPDG+   ECFN+YPLTRAEGDD+NSPIDPN+PGRYY DP CR   GE DQTKP  A  G  +   Y L + + C  CILQM Y+TGN+C H+GYEEF P SWPSACAP K DW++  R  CG+ G YPEE WAC+DF+IT D    +PTP+     P     +C +  G   QCGG         + G  CC  G  C+     +S+CRP            P  C+E+W QCGG
Sbjct:  137 GQVLEFVIVMNAHHWGHLEFFICNADN--DPDGIPTQECFNEYPLTRAEGDDDNSPIDPNFPGRYYCDPTCRGQTGEVDQTKPLHAISGENMKMRYVLPD-IECSHCILQMVYHTGNTCHHIGYEEFNPPSWPSACAPNKEDWVDTTREACGQGGYYPEEFWACSDFSITRDATPPSPTPSVETIPPVNEPTECAEEWG---QCGGAGGGAVDGVWTGPTCCVSGTTCSYKDEWWSECRPTGDSSSDDTPEEPTECAEEWGQCGG 395          
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 8.070e-82
Identity = 134/288 (46.53%), Postives = 161/288 (55.90%), Query Frame = 3
Query:  444 GQVLEIKLGMTAYHWGHVEFFICNADEMED-PDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWI-ELDRYLCGENGSYPEECWACADFAITPDG----------------------------------------------------MANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDW 1145
            G +LE+K+ +  YHWGHVE F+C+AD++ D PD V    CFN+YPL RAE D+ NSPIDP   GR+ +DP CR  ETDQ    GA  G V  A +QL +G+TC+RC++QM YYTGNSCKH GY EF P SWPS+CAP K DWI E+    CG+  +YPEE W CAD +IT DG                                                         P  T+P  DC DPV  + QCGG  Y+GS CC  GYEC EMA CYS+CRP   GCSE W
Sbjct:   82 GGILEVKIVVATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADVSITSDGGPXXXXXXXXETPKETKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSTDP--DCEDPVDAFAQCGGAGYDGSTCCTAGYECEEMADCYSECRPRGDGCSESW 367          
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 5.500e-79
Identity = 124/221 (56.11%), Postives = 150/221 (67.87%), Query Frame = 3
Query:  444 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYS 1106
            GQVLE+ + M AYHWGH EFF+CN D+M+DPDGV   ECFN +PLTRA+ D + SPIDPNYPGRYYVDP+CRE ET+Q+    + +GY I   Y L + + C+ CILQM YYTGN+CKH+GYEEF P SWPS+CAP K DWIELDRY+CG  G YPEE WAC+DF++T DG    TPA   P+ D +D     D   G           G E  E   CY+
Sbjct:  139 GQVLEMDIVMNAYHWGHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQSS--NSIEGYNIKMRYVLPD-IECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWIELDRYVCGTRGQYPEEFWACSDFSMTSDGS---TPADA-PMPDPVDEEDDEDSTDG-----------GMEMYEYVGCYT 341          
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 1.030e-77
Identity = 133/281 (47.33%), Postives = 158/281 (56.23%), Query Frame = 3
Query:  489 GHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPD----GMANPTPAPTE-----------------------------------------------PLA-DCLDPVGPYDQCGGED-YEGSDCCREGYECTEMASCYSQCRPIP----GGCSEDWDQCGG 1160
            GH+EFFICNA++M DPDGV    CFN +PL RA+ D + SPIDP++ GRYY+DP CR GETDQ    GA  G V  A Y+L  GLTC RCILQM YYTGN+CKH GY+EF+P S P  CAP K DW++    +CGE+G YPEE W CAD  IT D    G A  TP+PT+                                               P A  C DP   Y+QCGG+D Y+G  CC E  EC E+A CYS+CRP        CS +W QCGG
Sbjct:  214 GHLEFFICNAEDMSDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITSDEDGGGPAPTTPSPTDEEELSPTPEPSVPTVELPRTPXXXXXXXXXXXSGMESTPVPSVAPASPTATSCDDPAEVYEQCGGDDSYDGRTCCVENSECVELADCYSECRPAETTPEDNCSGEWGQCGG 494          
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 1.850e-74
Identity = 136/348 (39.08%), Postives = 165/348 (47.41%), Query Frame = 3
Query:  444 GQVLEIKLGMTAYHWGHVEFFICNADEMED-PDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDG----------------------MANPTPAPT-------------------EPLA------------------------------------------------------------------------DCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDW 1145
            G +LE+K+ ++ YHWGHVE F+C+AD++ D PD V    CFN+YPL RAE D+ N PIDP   GR+ +DP CR  ETDQ    GA  G V  A +QL +G+TC+RC++QM YYTGNSCKH GY EF P SWPS+CAP K DWI      CG+  +YPEE W CAD +IT DG                         P+PAPT                   EP+                                                                         DC DPVG + QCGG  Y+GS CCR GYEC +MA CYS+CRP    CSE W
Sbjct:  131 GGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITSDGGPXXXXXXXPETPQKPEAPVDEATEPSPAPTAVVEEYXXXXXXXXXXXHEEPMTPSPTTAEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVSTDPDCEDPVGAFAQCGGAGYDGSTCCRAGYECEKMADCYSECRPRGDRCSEGW 478          
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 2.120e-73
Identity = 139/366 (37.98%), Postives = 163/366 (44.54%), Query Frame = 3
Query:  444 GQVLEIKLGMTAYHWGHVEFFICN-ADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDG--------------------------------------------------------------------------------------------------------------------MANPTPAPTEPL---------------ADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDW 1145
            G VLE+K+ ++ YHWGHVE F+C+ AD  E  D +    CFN YPL RA  D+ N PIDP Y GR+ +DP CR  ETDQ   EGA  G V  A YQL EG+ CDRC++QM YYTGNSCKH GY EF P SWPS+CAP K DWI      CG+  +YPEE W CAD +IT DG                                                                                                                     A P  +PTEP+               +DC DPVG ++QCGGE Y+GS CCR GYEC EMA CYS+CRP    CSE W
Sbjct:  138 GGVLEVKILVSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDGGPGTAPXXXXXXXXXXXXXXXEEEGTEAPMXXXXXXXXXXXXXXXXEFDDESTPXXXXXXXXXXXXXXXXXXXXXXEPTTPAPVEGDXXXXXXXXXXSMDGEDYXXXXXXXTAELEPATPMDSPTEPIVATFAPSVPPPISDHSDCEDPVGAFNQCGGEGYDGSTCCRAGYECEEMAECYSECRPKDDRCSEGW 503          
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 2.450e-72
Identity = 111/186 (59.68%), Postives = 133/186 (71.51%), Query Frame = 3
Query:  435 LPRGQVLEIKLGMTAYHWGHVEFFICN-ADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMANPTPAPTEP 989
            L  G VL+IK+ +  Y  GH+EFFICN AD    P    N ECFN  PLTRAEGDD NSPIDP YPGRYYV+P C   E  +  P+GAQDGYVI+  YQL EGLTCD C+LQM +YTGN+CKHVGY++FEP SWPS CAP K +WI  D ++CG  G+YPEE W+C+D +IT DG    + +P EP
Sbjct:  140 LKEGGVLDIKVVVAEYLGGHLEFFICNSADLRYGPTSKPNQECFNMNPLTRAEGDDVNSPIDPAYPGRYYVNPPCHATEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEKSSSPVEP 325          
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 1.400e-71
Identity = 116/186 (62.37%), Postives = 138/186 (74.19%), Query Frame = 3
Query:  444 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMANP-TP--APTEPL 992
            G+VLE+ + M AYHWGH EFF+CNADEM+DPDGV   ECFN+YPLTRA  D + SPIDPNYPGRYYVDP+CR GET+Q  PEGA  GY I   Y L + + CDRC+LQM         H+GY+EF+P SWPS CAP K DWIEL+RY+CGE G+YPEE WAC+D ++T DG A P TP   PT P+
Sbjct:  143 GEVLEMDIIMNAYHWGHCEFFLCNADEMDDPDGVPTQECFNRYPLTRAADDGDASPIDPNYPGRYYVDPECRAGETEQGSPEGAPKGYNIKMRYVLPD-IECDRCVLQM---------HIGYDEFDPPSWPSTCAPNKSDWIELNRYICGEEGAYPEEFWACSDISLTSDGSAPPPTPYTTPTTPV 318          
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Match: D7FZQ9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ9_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 2.260e-71
Identity = 122/240 (50.83%), Postives = 147/240 (61.25%), Query Frame = 3
Query:  444 GQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGVAN*ECFNKYPLTRAEGDDENSPIDPNYPGRYYVDPKCR--EGETDQTKPEGAQDGYVIHASYQLAEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEECWACADFAITPDGMANPT------PAPTEPLADCLDPVGPYDQCGGED-------YEGSDCCREGYECTEMASCYSQCRP 1118
            GQ LE  + M AYHWGH+EFFICNAD   DP+G+   ECFN+YPLTRAEGDD NSPIDP++PGRYY DP CR  EGE DQTKP  A  G  +   Y L + + C  CILQM Y+TGN+C H+GY++F+P SWP  CA  K  W+      CG+ G YPEE WAC+DF+IT DG  + T      PA TEP   C +    + QCGG         + G  CC  G  C      +S CRP
Sbjct:  138 GQDLEFNVVMNAYHWGHLEFFICNADN--DPNGIPTQECFNEYPLTRAEGDDYNSPIDPDFPGRYYCDPTCRGEEGEVDQTKPVHAISGENMKMRYVLPD-IECSHCILQMVYHTGNTCYHIGYDDFDPPSWPGDCATTKEQWVNTTVEACGQEGYYPEEFWACSDFSITSDGPPSSTXXXXXXPAVTEPTG-CAEE---WQQCGGAGGDAVGGVWTGPTCCVPGTTCYYKDVYWSDCRP 370          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1284.1735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4D7_ECTSI4.710e-19597.84EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FZR0_ECTSI6.340e-8351.32EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FP25_ECTSI8.070e-8246.53EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMS9_ECTSI5.500e-7956.11EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5JI36_9PHAE1.030e-7747.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LD67_ECTSI1.850e-7439.08EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMF4_ECTSI2.120e-7337.98EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5JFL8_9PHAE2.450e-7259.68CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FRE8_ECTSI1.400e-7162.37EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FZQ9_ECTSI2.260e-7150.83EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1284contigE-siliculosus-1a_F_contig1284:2023..6831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size513
Model size1280
Exons8
Ec32 orthologEc-00_007410.1
Ec32 ortholog descriptionCellulose/chitin-binding protein
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CZUJ@1,2SBQR@2759
EggNOG free text desc.Fungal-type cellulose-binding domain
Seed eggNOG ortholog2880.D7FSZ8
Seed ortholog evalue8.1e-32
Seed ortholog score143.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927804.8438022-CDS-E-siliculosus-1a_F_contig1284:2022..20701622927804.8438022-CDS-E-siliculosus-1a_F_contig1284:2022..2070Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 2023..2070 -
1696318687.0210917-CDS-E-siliculosus-1a_F_contig1284:2022..20701696318687.0210917-CDS-E-siliculosus-1a_F_contig1284:2022..2070Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 2023..2070 -
1622927804.8604007-CDS-E-siliculosus-1a_F_contig1284:2356..24791622927804.8604007-CDS-E-siliculosus-1a_F_contig1284:2356..2479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 2357..2479 -
1696318687.0322137-CDS-E-siliculosus-1a_F_contig1284:2356..24791696318687.0322137-CDS-E-siliculosus-1a_F_contig1284:2356..2479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 2357..2479 -
1622927804.8729575-CDS-E-siliculosus-1a_F_contig1284:2805..29631622927804.8729575-CDS-E-siliculosus-1a_F_contig1284:2805..2963Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 2806..2963 -
1696318687.0413175-CDS-E-siliculosus-1a_F_contig1284:2805..29631696318687.0413175-CDS-E-siliculosus-1a_F_contig1284:2805..2963Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 2806..2963 -
1622927804.8856854-CDS-E-siliculosus-1a_F_contig1284:3305..34791622927804.8856854-CDS-E-siliculosus-1a_F_contig1284:3305..3479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 3306..3479 -
1696318687.0540063-CDS-E-siliculosus-1a_F_contig1284:3305..34791696318687.0540063-CDS-E-siliculosus-1a_F_contig1284:3305..3479Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 3306..3479 -
1622927804.8989377-CDS-E-siliculosus-1a_F_contig1284:4002..40121622927804.8989377-CDS-E-siliculosus-1a_F_contig1284:4002..4012Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 4003..4012 -
1696318687.065068-CDS-E-siliculosus-1a_F_contig1284:4002..40121696318687.065068-CDS-E-siliculosus-1a_F_contig1284:4002..4012Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1284 4003..4012 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927804.9096546-UTR-E-siliculosus-1a_F_contig1284:4012..42911622927804.9096546-UTR-E-siliculosus-1a_F_contig1284:4012..4291Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1284 4013..4291 -
1696318687.073511-UTR-E-siliculosus-1a_F_contig1284:4012..42911696318687.073511-UTR-E-siliculosus-1a_F_contig1284:4012..4291Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1284 4013..4291 -
1622927804.9212198-UTR-E-siliculosus-1a_F_contig1284:4893..50091622927804.9212198-UTR-E-siliculosus-1a_F_contig1284:4893..5009Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1284 4894..5009 -
1696318687.0815744-UTR-E-siliculosus-1a_F_contig1284:4893..50091696318687.0815744-UTR-E-siliculosus-1a_F_contig1284:4893..5009Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1284 4894..5009 -
1622927804.9342382-UTR-E-siliculosus-1a_F_contig1284:5512..57411622927804.9342382-UTR-E-siliculosus-1a_F_contig1284:5512..5741Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1284 5513..5741 -
1696318687.091477-UTR-E-siliculosus-1a_F_contig1284:5512..57411696318687.091477-UTR-E-siliculosus-1a_F_contig1284:5512..5741Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1284 5513..5741 -
1622927804.9463668-UTR-E-siliculosus-1a_F_contig1284:6688..68311622927804.9463668-UTR-E-siliculosus-1a_F_contig1284:6688..6831Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1284 6689..6831 -
1696318687.0990827-UTR-E-siliculosus-1a_F_contig1284:6688..68311696318687.0990827-UTR-E-siliculosus-1a_F_contig1284:6688..6831Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1284 6689..6831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1284.1735.1prot_E-siliculosus-1a_F_contig1284.1735.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1284 2023..4012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1284.1735.1

>prot_E-siliculosus-1a_F_contig1284.1735.1 ID=prot_E-siliculosus-1a_F_contig1284.1735.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=171bp
MNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEE
CWACADFAITPDGMANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCR
EGYECTEMASCYSQCRPIPGGCSEDWDQCGGTTEVGYWEGPTCCWPGASC
VEHDRFWSSCLPDDYVPDEE*
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mRNA from alignment at E-siliculosus-1a_F_contig1284:2023..6831-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1284.1735.1 ID=mRNA_E-siliculosus-1a_F_contig1284.1735.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4809bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1284:2023..6831- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGTCTCGTAAACGTTGCACCGAAGCGACGGTGCTTGCTTTGCTGAC TGTCGCGCGACAACAGGGCCAAATTCGAGGCCACCTCTACCAATTCGAGC CCGCCACCCGTCAGGTGTACCTCTCGCCCGTGTACCAAGAGTGGTAAGTG GTGTTTCGACGCACGTTCAACAGTAGTACAAAGCTGTTGGAACAAACGCG CTCATTTTCAAATCACTGATCTGCAGCAGCAGCGCAATGTTGCATGCGTA TAGGCCAGCAACCGAAGTCAAGTTGGCCCGTCGACGTCTGTGTTTGCATG CTTGGAGCATACAGCAGACCCGGTACTGCTGCAAATATACATACATGTGC ATGTGATTCCACAATCAAAGTATGGTGTTTGGTTTGCAGCAAGTTGGCTA GATTTCAGGAGCCGCGTTGAACGATCCTGCATCCGGGATGACGTGAAGAA ACAAAAAACAACCGGCGTGTGATTTTCCTCGGCCGTCGGGTGCCGTGTAG ACTATGTTGATAGCGTCCGTCCAACAACCCGTGAGGAAACTCTTTCGCTC AAGCGCAGCTCAAAGATACGCACTGCACCGGTAGAGCTATCGTATTTGTT CTCCTTGCCAACTTTCCGATCTGGCCGATTTTCCTCTCAGAGCAAACCAT TCACAGTTCTCACATGCAATGCTGTACAAGTAGATCCAAATGGTTCAGTA AACGCTACGCGCTGAAGATTCCGTGGTCGTAGCAGACGTGGAAGTATTGA CTTTCTTTGCACATGTACACTACAGTACTTGTAGGGCACCGTCGGCAGCT TCCTACGAGTCCACCAGCTCTTGCGCGCAGCAAGTTGGAGCCAGTGCAAT GTTGGGGACTATAAGAAAGGCTTACCCATTAGACTACTCCGTCAGCGCGG GCAATCCTTTCTAACAGGGACAATCCGTGACGTAACTTTGTGAAGGATTT GTGTGGCAGGTGTATGCATGCAGGCGTCAGCCGTAGTCGTCGTCGTCTGC TTTGAAAATGACGCGTCTGTTTGCATGTGCCGTCGTCTTCCTTGTTCGCC CTGTTGCTCTGGCGATGGCGCTGACGCTGCACACATGCAGGCCCTTCGAG AGGATGGAGTACTGTCCCAGCTGCTACAACGCCCGGGGGCCTACGTACGT CAAGGAGAGAGGGATCGTCAACACCGACCCCGCTGTACTCGCGGAGTACG GCGACGGCGAGTGGCCCCTCAGGTGGGCGTACGAAAAGGGAGAGATGGCG GAGAACGGGAACTACCTCGAGAACGATGAGATCGCCAAACGCCACGGCAT CTGCGGCGACCCGGAGCAGGTCCGCCTCTTTTTAATGTTTTTTGATGATG CAATGGTACAACACACCAACAATTAAGTATTTTCCACATTTCTTCACCTC TGTCATCTAGTGTTTGAGTGCATGTCGCAGCTAGACGCAGCCCCAGACCA CTCCCGCCGCTGCGGAGTAGGTCCGCGTCTTCTTCGCTTTCGATCTTTAG TTCTATCTTATGAAACCATGGTACAACACACCAACACACCAACCAGTGTT TCCTTGTTGCTTCACTTCTCATATCGTCTGGTTGGGTGCAAATCGTAGCG AGACCCAACCCGCTCCCACCGCTCGCTTCCGCCAGGACTTCCGTGGTTTC AATCAAGTTCGCCCTCTCGGATGTGTGAACCCACGTGGTTAGCTGATGTC GAAGAATGAAAAGTGAATCCCTAACTGCGCTTGCGTCTACATTTGGGGGA TATGTCCAACCAAGCTCATTCGTGTAGACAATCCTGCGAGCAAATCACAT ATCTTTGGTTGTTGTACTGCAGAATGCGGAGGAGGGGGCCTACTTCTACA GCACCCCAAACGGCGACTGGCCTATCCTCAACACTTACCGAGAGGGCAAG TGCTCGAGATTAAGCTCGGAATGACCGCCTACCACTGGGTAAGGGCAATA TTCACTTTCAGACGCCTCTCGTGACTCGATCATTCGTCTCGTGGGGAAGG TTTCGAGAAACAACTCCCGGCGGTTTTCACCCGCCAACGCGTGCGGTACA ACGTTCTTCGAGAAAAAAGCCGTTGACTTCCCGTTGTTTTACGACGTCAA CGTATGCTTGCCCCCTGATGTTGTCACAGCTGAACTTCCGGCGGCATCCT TCACTGATTGGCGCTTTCGACCGGCCGTTGTCACATTCGCAGTTTTCAAC GATGCCTTTGCCTGCACTGTTCACTGGTCTTCATGACCGTCGCTTCTTGG CCTCTTGGGTTCACTTCCACTGAACCCCCCGTGTCCCTATTCATTGCTGC GTTCATTTCATTGAAACTGTTTTCACCAGACTATCGAAGAAGGGCGTTAC TGCCATCTCGTATCTCACCCACCCTTCCGACGAAATCTAGACGCCTACCT CCCCCAGCAATCCTCGACGAAGAGACCTCTCAATCTGGAACGTACAACCC AGCATGAACCATGACCCCGTGCCCGCTCCCACGACAACGCTATGGGCGAT GAACCCTTCGAACGTCCATATTCCACGGCTCGAGAAATAGGGGCACGTTG AATTCTTCATCTGCAACGCCGACGAAATGGAAGACCCCGACGGCGTCGCC AACTAGGAGTGCTTCAACAAGTACCCCTTAACCCGGGCCGAGGGGGACGA CGAAAACAGCCCCATCGACCCCAACTACCCGGGCCGCTACTACGTGGACC CCAAGTGCCGCGAGGGTGAGACCGACCAGACGAAGCCGGAGGGTGCCCAG GACGGGTACGTAATCCACGCCAGTTACCAGCTGGCGGAGGGCCTGACCTG CGACCGCTGCATCCTGCAGATGAACTACTGTGAGTCTTTGGGAGCTGCTT TCAAGGGAGTGGTACGATGGTGTGTGGATCTGGGGGGTTGTTTTACGTGT TGTTTAGGTCTATTTTGGCACGGTAGAGTCTGACCGTCTTTTGTCGGTAT AAGCAGGGTAGCGAGAAGCAGAAGGAAATACTGCACAAGTGCAGTTGGGA GTTTTGTGAAGTAGCGGCCTCCCTCGATCCATCTGCGGTTGGTGCGGTCA ACCAGAGCGGACGGTCCTTTTGACTGCTGTCGTGCCGTGTGTCGTGCGCT TGCCATAGACAGAAGCGCTCCCTCGCCATCTTGCCGCGCCTTTTTCGTCA CCCCGCCCGCCACACCGATGAATGTTCGGAAACCAACCCGCCCCCGTAAT CGCCATGCGTCCTCTCTGTGGTGGCTCCTCAACGCCCGATTATTCCCTTT TCTTGGAAAGGATCACGGTCAGCCACTGATCAACAGCACTAAGAGTTGCG TCGCGCCCCCACGTCTTCGTACGCCCCCGAATCATGTTGACGATTTGTCA AGACACTGGCAACTCGTGCAAGCACGTCGGATACGAGGAGTTCGAGCCGG CCTCGTGGCCTAGCGCGTGCGCCCCGGAGAAGCACGACTGGATCGAGCTC GACCGCTACCTCTGCGGGGAGAACGGGTCCTACCCGGAAGAGTGCTGGGC GTGCGCCGACTTCGCCATCACGCCCGGTGAGTTGCATGACGTGTTATACA CATGCAGTGCTTGTCCAGGGTTGCTCAGACAAGGGATCATCTTATGCGGA GATCGAAGCTGCTGAACCTTGTACAAAAGTATTCAATTGGGCTCAAAGAC GCCTGTACCGCACAACACTTTTGATTTGTCTTATGCCCGCGCCCGAACCG CTACCCTGTTTGCCTTTTTCCAGCCCCTCTCGAGCTAGATCTCTCGTGGC CCGAACGACGAGGCAATACATATGTAGGTCAGGTCAGGTCGGCAATATCT TGGAACTACCAAAGTTCTTTTTACCTGTGTCGCTTGACCCGCCCTGGCCC CTCTGACAACCCACGCAGATGGGATGGCCAACCCGACCCCAGCACCCACC GAGCCGCTAGCCGACTGCTTAGACCCGGTCGGGCCTTACGATCAGTGCGG TGGCGAGGACTACGAGGGGAGCGACTGCTGCCGTGAAGGGTACGAGTGCA CCGAAATGGCCTCCTGCTACTCGCAGGTAAACGAAGACCGTACTGCGGTA GAGGTAGGAGACCTCCACTTGACGGCCTTCGGAGACGGCCCTTTCCTCCG TCCTGCGCCTGAGCAGCTACTGTAGTGCAGCCCCGCCTAGCCACAGCATC CATCGACACCGCCTCTCTGCGCCGACACCTCGCCTCTCTTCCATGTCGGC GTGCAGCATGCTACGTAAACCTAGGATTGATGCCCCCCCACCCCCACGCC CTGGCCTACCTGTCCGCGTGCAACTACCTAAACCTAGGATTGTTCTCCCC CCAACCGCACCTAACCGCCGCCGTCGCCTGCACCAAATACACCAAACTTC AGTGCCGACCCATCCCCGGGGGCTGTTCCGAAGATTGGGACCAATGCGGT GGAACTACCGAGGTAGGCTACTGGGAGGGGCCCACCTGCTGCTGGCCTGG GGCTTCCTGCGTAGAGCACGACAGGGTGAGTTCGGTGCTGCGTCTATCTT TCCCGGTTGAGTAGCGGGGGGGGGTGGGGGCATAGGACAAGTGTTCCTGC TGGCGGTAGCCGACGAGAGATGCTAAGCCACACAACATGACTCCGCTCTC CTCAGCCCTCCACTCACAGCATGTGTCCCCACTGCGTAATTCTCCGTTAC TCCTGTCCTTGCGTCGTACCACTCTCTACTATTGTGTAGTTTTTCTCCCT CGTCACGGCTTTGTGTTTGCTGTGTTATGCTCGCTTTTGCGGCGCGTGTT TTCTGTCGCAGTTCTGGTCGTCCTGCCTCCCCGACGACTACGTACCCGAC GAGGAGTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1284:2023..6831-

>mRNA_E-siliculosus-1a_F_contig1284.1735.1 ID=mRNA_E-siliculosus-1a_F_contig1284.1735.1|Name=mRNA_E-siliculosus-1a_F_contig1284.1735.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1026bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1284:2023..6831- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAACTACTATGAACTACTACACTGGCAACTCGTGCAAGCACGTCGGAT
ACGAGGAGTTCGAGCCGGCCTCGTGGCCTAGCGCGTGCGCCCCGGAGAAG
CACGACTGGATCGAGCTCGACCGCTACCTCTGCGGGGAGAACGGGTCCTA
CCCGGAAGAGTGCTGGGCGTGCGCCGACTTCGCCATCACGCCCGACACTG
GCAACTCGTGCAAGCACGTCGGATACGAGGAGTTCGAGCCGGCCTCGTGG
CCTAGCGCGTGCGCCCCGGAGAAGCACGACTGGATCGAGCTCGACCGCTA
CCTCTGCGGGGAGAACGGGTCCTACCCGGAAGAGTGCTGGGCGTGCGCCG
ACTTCGCCATCACGCCCGATGGGATGGCCAACCCGACCCCAGCACCCACC
GAGCCGCTAGCCGACTGCTTAGACCCGGTCGGGCCTTACGATCAGTGCGG
TGGCGAGGACTACGAGGGGAGCGACTGCTGCCGTGAAGGGTACGAGTGCA
CCGAAATGGCCTCCTGCTACTCGCAGATGGGATGGCCAACCCGACCCCAG
CACCCACCGAGCCGCTAGCCGACTGCTTAGACCCGGTCGGGCCTTACGAT
CAGTGCGGTGGCGAGGACTACGAGGGGAGCGACTGCTGCCGTGAAGGGTA
CGAGTGCACCGAAATGGCCTCCTGCTACTCGCAGTGCCGACCCATCCCCG
GGGGCTGTTCCGAAGATTGGGACCAATGCGGTGGAACTACCGAGGTAGGC
TACTGGGAGGGGCCCACCTGCTGCTGGCCTGGGGCTTCCTGCGTAGAGCA
CGACAGGTGCCGACCCATCCCCGGGGGCTGTTCCGAAGATTGGGACCAAT
GCGGTGGAACTACCGAGGTAGGCTACTGGGAGGGGCCCACCTGCTGCTGG
CCTGGGGCTTCCTGCGTAGAGCACGACAGGTTCTGGTCGTCCTGCCTCCC
CGACGACTACGTACCCGACGAGGAGTAATTCTGGTCGTCCTGCCTCCCCG
ACGACTACGTACCCGACGAGGAGTAA
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