mRNA_E-siliculosus-1a_F_contig12829.1733.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12829.1733.1
Unique NamemRNA_E-siliculosus-1a_F_contig12829.1733.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12829.1733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12829contigE-siliculosus-1a_F_contig12829:453..969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size351
Model size517
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12829.1733.1prot_E-siliculosus-1a_F_contig12829.1733.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12829 470..820 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927803.8766398-UTR-E-siliculosus-1a_F_contig12829:452..4691622927803.8766398-UTR-E-siliculosus-1a_F_contig12829:452..469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12829 453..469 +
1696318686.4215314-UTR-E-siliculosus-1a_F_contig12829:452..4691696318686.4215314-UTR-E-siliculosus-1a_F_contig12829:452..469Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12829 453..469 +
1622927803.9069467-UTR-E-siliculosus-1a_F_contig12829:820..9691622927803.9069467-UTR-E-siliculosus-1a_F_contig12829:820..969Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12829 821..969 +
1696318686.4407656-UTR-E-siliculosus-1a_F_contig12829:820..9691696318686.4407656-UTR-E-siliculosus-1a_F_contig12829:820..969Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12829 821..969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927803.8901486-CDS-E-siliculosus-1a_F_contig12829:469..8201622927803.8901486-CDS-E-siliculosus-1a_F_contig12829:469..820Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12829 470..820 +
1696318686.430218-CDS-E-siliculosus-1a_F_contig12829:469..8201696318686.430218-CDS-E-siliculosus-1a_F_contig12829:469..820Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12829 470..820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12829.1733.1

>prot_E-siliculosus-1a_F_contig12829.1733.1 ID=prot_E-siliculosus-1a_F_contig12829.1733.1|Name=mRNA_E-siliculosus-1a_F_contig12829.1733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=117bp
MASSVVSFLEEVYFYSVYVPVIRQSRRRNVNVCVFVVRTHLITKCITTES
IPELFVYKPAAGSGGGTNLSIQYHINRKWESNPEPNVVQRCAHVHRLNVE
FKYPLGSRLVATIAFC*
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mRNA from alignment at E-siliculosus-1a_F_contig12829:453..969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12829.1733.1 ID=mRNA_E-siliculosus-1a_F_contig12829.1733.1|Name=mRNA_E-siliculosus-1a_F_contig12829.1733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=517bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12829:453..969+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTGTAGTTGTACACAGATGGCAAGCAGTGTTGTTTCGTTCTTGGAAGAG
GTGTATTTCTACTCTGTGTACGTCCCGGTCATCAGACAATCGCGCCGTCG
AAACGTTAACGTTTGCGTGTTCGTCGTGAGGACACACTTGATAACGAAGT
GCATCACAACAGAATCAATCCCGGAGCTCTTCGTTTACAAGCCAGCGGCA
GGGAGCGGCGGCGGAACAAACCTGTCTATACAGTATCACATCAATAGGAA
ATGGGAATCAAATCCAGAACCGAATGTTGTTCAACGTTGCGCTCACGTCC
ATCGTCTCAATGTGGAGTTCAAATACCCTCTCGGGTCTCGTCTTGTAGCA
ACAATAGCCTTCTGTTGAAGGTCAAATAATGAAAAATACAGTCAGCCGCA
AGAACAATCATAAGTAGAAGTTTATCTATGTAGAGAGGTCACTCAAACGA
GAAAGCTAAATGCCTTCGGTTCTGGAACCACAACAGAAGACCTATCAAAC
GGGCCCCACCCCCCTAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12829:453..969+

>mRNA_E-siliculosus-1a_F_contig12829.1733.1 ID=mRNA_E-siliculosus-1a_F_contig12829.1733.1|Name=mRNA_E-siliculosus-1a_F_contig12829.1733.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12829:453..969+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCAAGCAGTGTTGTTTCGTTCTTGGAAGAGGTGTATTTCTACTCTGT
GTACGTCCCGGTCATCAGACAATCGCGCCGTCGAAACGTTAACGTTTGCG
TGTTCGTCGTGAGGACACACTTGATAACGAAGTGCATCACAACAGAATCA
ATCCCGGAGCTCTTCGTTTACAAGCCAGCGGCAGGGAGCGGCGGCGGAAC
AAACCTGTCTATACAGTATCACATCAATAGGAAATGGGAATCAAATCCAG
AACCGAATGTTGTTCAACGTTGCGCTCACGTCCATCGTCTCAATGTGGAG
TTCAAATACCCTCTCGGGTCTCGTCTTGTAGCAACAATAGCCTTCTGTTG
AATGGCAAGCAGTGTTGTTTCGTTCTTGGAAGAGGTGTATTTCTACTCTG
TGTACGTCCCGGTCATCAGACAATCGCGCCGTCGAAACGTTAACGTTTGC
GTGTTCGTCGTGAGGACACACTTGATAACGAAGTGCATCACAACAGAATC
AATCCCGGAGCTCTTCGTTTACAAGCCAGCGGCAGGGAGCGGCGGCGGAA
CAAACCTGTCTATACAGTATCACATCAATAGGAAATGGGAATCAAATCCA
GAACCGAATGTTGTTCAACGTTGCGCTCACGTCCATCGTCTCAATGTGGA
GTTCAAATACCCTCTCGGGTCTCGTCTTGTAGCAACAATAGCCTTCTGTT
GA
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