mRNA_E-siliculosus-1a_F_contig12802.1723.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12802.1723.1
Unique NamemRNA_E-siliculosus-1a_F_contig12802.1723.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12802.1723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12802contigE-siliculosus-1a_F_contig12802:81..1430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size297
Model size447
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12802.1723.1prot_E-siliculosus-1a_F_contig12802.1723.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12802 649..1430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927801.9465854-UTR-E-siliculosus-1a_F_contig12802:80..1591622927801.9465854-UTR-E-siliculosus-1a_F_contig12802:80..159Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12802 81..159 +
1696318685.8663554-UTR-E-siliculosus-1a_F_contig12802:80..1591696318685.8663554-UTR-E-siliculosus-1a_F_contig12802:80..159Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12802 81..159 +
1622927801.9652033-UTR-E-siliculosus-1a_F_contig12802:577..6481622927801.9652033-UTR-E-siliculosus-1a_F_contig12802:577..648Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12802 578..648 +
1696318685.8737187-UTR-E-siliculosus-1a_F_contig12802:577..6481696318685.8737187-UTR-E-siliculosus-1a_F_contig12802:577..648Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12802 578..648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927801.9795067-CDS-E-siliculosus-1a_F_contig12802:648..8591622927801.9795067-CDS-E-siliculosus-1a_F_contig12802:648..859Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12802 649..859 +
1696318685.8812068-CDS-E-siliculosus-1a_F_contig12802:648..8591696318685.8812068-CDS-E-siliculosus-1a_F_contig12802:648..859Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12802 649..859 +
1622927801.9982176-CDS-E-siliculosus-1a_F_contig12802:1344..14301622927801.9982176-CDS-E-siliculosus-1a_F_contig12802:1344..1430Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12802 1345..1430 +
1696318685.8890655-CDS-E-siliculosus-1a_F_contig12802:1344..14301696318685.8890655-CDS-E-siliculosus-1a_F_contig12802:1344..1430Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12802 1345..1430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12802.1723.1

>prot_E-siliculosus-1a_F_contig12802.1723.1 ID=prot_E-siliculosus-1a_F_contig12802.1723.1|Name=mRNA_E-siliculosus-1a_F_contig12802.1723.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=99bp
MRQMSDAHKHFLQYKFMDDPNESAGGDQAGYTGHGQNGGGGGGDNGSCRE
SDVTITIVGDSVDLVGLVRFGGRTRDTSVGVGRQMDDIRVVLLWVTTLS
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mRNA from alignment at E-siliculosus-1a_F_contig12802:81..1430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12802.1723.1 ID=mRNA_E-siliculosus-1a_F_contig12802.1723.1|Name=mRNA_E-siliculosus-1a_F_contig12802.1723.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1350bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12802:81..1430+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGTGGCTAGCGGAGTTACTTGCGACAACGATCCTGCCGGGCTAGTGCTAT
CTTTCTCCGACACCCTTCACTTCGAAATGGCAAGTGTATCTCCTAGGTTG
ATTCCTGCATCCTCAATTGCTATTCGTGGACCTCGCTCCTGCTGCCCCGC
TGTTGTCGTCGTGTGTGCATTCTCTGCGAGAAGGTTGTTTTTGTCACAGT
GTTCTTTGACTCGTTTGAGTTTCATTTATGGATGTTCGTTTTCCGCACAT
CAGCACGTACAGAGGGCTGGAAAACAGATTGAAGTGGGATTGACCTACGT
CATATTCAACGCGAAACTTTCGAATGTACTGCGGAGTAGAACGCAGTGTT
GCCCTCACGAACCTCGTGTGTCTTAACAGAACGGAAGTGTTCCGTATTCG
AGATGGGGTGTGAACAAGTGCGCTTTTCCATGTTCTTGCGTCTGAACTGA
AAATATTGAAAACGTTGAGTGTAAATTCTCGCCCTGCCCCTACCCAGGCT
CTGGACTCTCCCGCACTACTAGTCGTGGTGCAGGCTCTGGGACCGACATT
CCACCTACTGCAGAGTACATGCGACAGATGTCGGATGCCCATAAACACTT
CCTCCAGTACAAGTTCATGGACGACCCCAACGAAAGCGCCGGTGGCGACC
AGGCGGGCTACACTGGCCATGGCCAGAACGGCGGCGGCGGCGGCGGCGAC
AACGGTAGCTGCCGCGAGAGCGATGTCACCATCACCATCGTCGGCGACTC
TGTCGACTTAGTCGGACTAGTTCGTTTCGGTGAGGGTTGTTTATGGGTGG
TAGGTGGTTTTCGTTAACAAGTCAAACCTCCGTCAAATTGTTGGTGGGTG
GAGGGGTAGCCATAAATGTTGATCTCGCCTCTTGGGAGAGATACTACGTA
AGTATCCCATGAGTTCGGTCGTTTTCCCATGTGTTGGAGGTGCGCCGGCA
GAACTCAGAGTGCACAGTGACCAGAAAATATCAGGACTAGTAGCATAGAA
CGTGTCTCTCTTGATACTGCTATTGCTCCATGTTCGACGGCGCTCTATGC
CATGCCGGAGGAATATGGTCAATGTTCTCGCACCCATGTTTTTCTTGTCA
AGCTGTAGCTCTTAGTGCTTTGAGGTTAGCCTGCGGCCTTCTCAGTGACG
ACGTCGGGTATTCCACAATGTTCAACCCCAATGTTCAACCCGACATTGAA
CGCAGGAATAGCACGACGACCCCTCTTCCCTGCCGGTTTCATTTCCCGAT
ACGCCCACTCCCAGGTGGACGGACTCGCGACACATCAGTGGGAGTTGGGA
GGCAAATGGACGATATTCGTGTTGTTTTGCTTTGGGTTACCACGCTGTCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12802:81..1430+

>mRNA_E-siliculosus-1a_F_contig12802.1723.1 ID=mRNA_E-siliculosus-1a_F_contig12802.1723.1|Name=mRNA_E-siliculosus-1a_F_contig12802.1723.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=594bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12802:81..1430+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGACAGATGTCGGATGCCCATAAACACTTCCTCCAGTACAAGTTCAT
GGACGACCCCAACGAAAGCGCCGGTGGCGACCAGGCGGGCTACACTGGCC
ATGGCCAGAACGGCGGCGGCGGCGGCGGCGACAACGGTAGCTGCCGCGAG
AGCGATGTCACCATCACCATCGTCGGCGACTCTGTCGACTTAGTCGGACT
AGTTCGTTTCGATGCGACAGATGTCGGATGCCCATAAACACTTCCTCCAG
TACAAGTTCATGGACGACCCCAACGAAAGCGCCGGTGGCGACCAGGCGGG
CTACACTGGCCATGGCCAGAACGGCGGCGGCGGCGGCGGCGACAACGGTA
GCTGCCGCGAGAGCGATGTCACCATCACCATCGTCGGCGACTCTGTCGAC
TTAGTCGGACTAGTTCGTTTCGGTGGACGGACTCGCGACACATCAGTGGG
AGTTGGGAGGCAAATGGACGATATTCGTGTTGTTTTGCTTTGGGTTACCA
CGCTGTCGGTGGACGGACTCGCGACACATCAGTGGGAGTTGGGAGGCAAA
TGGACGATATTCGTGTTGTTTTGCTTTGGGTTACCACGCTGTCG
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