mRNA_E-siliculosus-1a_F_contig1280.1721.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: D8LEJ6_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ6_ECTSI) HSP 1 Score: 463 bits (1192), Expect = 1.020e-163 Identity = 249/271 (91.88%), Postives = 253/271 (93.36%), Query Frame = 1
Query: 1 MDMDVGRGPEMTQQGMQFPMEIPQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 813
MD++VGRGP+MTQQGMQFPME+PQTLVKFDPPIFAGLEPSSDPNN XXXXXXXXMG K QQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLD KLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAAL EDKK LELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK
Sbjct: 1 MDVNVGRGPDMTQQGMQFPMEVPQTLVKFDPPIFAGLEPSSDPNNGGDNALLMGGNGGXXXXXXXXMGGKGQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDNKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALGEDKKGLELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 271
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A835YSJ6_9STRA (p28 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ6_9STRA) HSP 1 Score: 317 bits (813), Expect = 1.480e-106 Identity = 168/255 (65.88%), Postives = 197/255 (77.25%), Query Frame = 1
Query: 49 QFPMEIPQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 813
Q P +P +LV++D PIF G+EP++ G + +QL+DM+NSMLPPREWTEETGTWMQ VSK PATRL V+ LQE LDKKL ERQA +TGICPVR+DLY+QAFDELIR VTLDGPERGLL LRVRDEIRMTIDAY+TLYDSSV FG+KKQLQAEQGM EME +IA LEE K+ALE ELRN+VE++EK E+E+R+V+DK+R+EEV+FLKYQGQHLDSFLKQIGGSK
Sbjct: 6 QHPNAVPDSLVRYDQPIFGGVEPATGHG-----------------------GNGTASSSIAQLEDMMNSMLPPREWTEETGTWMQCVSKNPATRLDVVTLQECLDKKLGERQARDTGICPVRDDLYSQAFDELIRQVTLDGPERGLLLLRVRDEIRMTIDAYRTLYDSSVVFGIKKQLQAEQGMDEMEAEIAQLEESKQALEYRAQELRNRVELMEKREAEQRSVEDKRRREEVEFLKYQGQHLDSFLKQIGGSK 237
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A7S2UXS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS2_9STRA) HSP 1 Score: 317 bits (812), Expect = 3.530e-106 Identity = 171/270 (63.33%), Postives = 199/270 (73.70%), Query Frame = 1
Query: 7 MDVGRGPEMTQQG-MQFPMEIPQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 813
MD G +G Q P P++LVKFD P+F GL+PSS +K+ ASQ+DDM+NSM+PPREWT+ +GTWMQY+SKE ATRL VI LQEQLDK+L+ERQA ET ICPVREDLY+Q FDELIRHVTLD PERGLL LRVRDEIRMTIDAYKTLYDSSVTFG+KKQLQAE GM++ME+QIA LE KK E ELRNK+EVIEK E ERR +++KKRKEE+DFLKYQGQHLD+ +K +GGSK
Sbjct: 1 MDNASGQVRYDEGEQQDPANPPESLVKFDEPLFVGLQPSSHTK------------------AAAIANIKADGANASQIDDMMNSMIPPREWTDVSGTWMQYISKESATRLDVITLQEQLDKRLVERQARETDICPVREDLYSQCFDELIRHVTLDSPERGLLLLRVRDEIRMTIDAYKTLYDSSVTFGIKKQLQAEMGMSDMEKQIAILELTKKERENKTLELRNKLEVIEKREVERRGLEEKKRKEEIDFLKYQGQHLDTSIKHVGGSK 252
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A7S2CCB2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCB2_9STRA) HSP 1 Score: 309 bits (792), Expect = 2.390e-103 Identity = 164/249 (65.86%), Postives = 188/249 (75.50%), Query Frame = 1
Query: 67 PQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 813
P LVK+DP +F G +P+++ + SQLDDMVNSMLPPREWT+E+GTWMQYVSK+ ATRL VI LQE LDK+LLERQA ETGICPVREDLY+Q FDELIR VTLDGPERGLL LRVRDEI+MTIDAYK LY+SSVTFGV+KQLQAEQGMAE+E +I LE KK LE V ELRNKVEV EK +ER+ ++DKKRKEE+DFLKYQGQHLDSFL+Q+GG K
Sbjct: 12 PDALVKYDPALFVGFDPATN----------------------DVKATRKADATPSQLDDMVNSMLPPREWTQESGTWMQYVSKDSATRLDVINLQEMLDKRLLERQARETGICPVREDLYSQCFDELIRQVTLDGPERGLLTLRVRDEIKMTIDAYKILYESSVTFGVRKQLQAEQGMAELESEIEGLEAAKKELENQVLELRNKVEVSEKRGNERKTLEDKKRKEEIDFLKYQGQHLDSFLRQLGGGK 238
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A6V1KR45_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KR45_HETAK) HSP 1 Score: 293 bits (749), Expect = 1.180e-96 Identity = 157/259 (60.62%), Postives = 190/259 (73.36%), Query Frame = 1
Query: 43 GMQFPMEIPQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKAS--QLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 813
G Q P P++L+KFD PIF GL+PS+ ++ +G+ + QLDDM+NSMLPPREWTEE+GTWMQY+SKEPATRL VI LQE LDK L+ERQA ETGICPVREDLY+QAFDELIRHVTLD PERGLL LR RDE+RMT+DAYKTLY SSVTFGVKKQLQAE GM+EM QI AL E ++A E +ELR +++ EK +ER+ ++ + R+ E+DFLKYQGQHLD FLK +GG+K
Sbjct: 11 GGQGPANPPESLLKFDEPIFVGLQPSNQNEGFKMP--------------------EAPKGELTNAQLDDMLNSMLPPREWTEESGTWMQYISKEPATRLDVITLQEHLDKCLVERQARETGICPVREDLYSQAFDELIRHVTLDSPERGLLLLRARDEVRMTVDAYKTLYGSSVTFGVKKQLQAELGMSEMANQIEALGEARRARERRCAELRARLDAAEKRAAERQQLEGQARRAEIDFLKYQGQHLDGFLKHVGGTK 249
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A8J2S909_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S909_9STRA) HSP 1 Score: 283 bits (725), Expect = 3.130e-93 Identity = 151/246 (61.38%), Postives = 176/246 (71.54%), Query Frame = 1
Query: 67 PQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIG 804
P +L+K D P+F G + + K QL +MVNSMLPPREWTE TGTWMQYVSK PA+R VIA+QE LD KLLERQA + GICPVREDLY Q FDELIR +TLDGPERGLL LRVRDE+RMT+DAYK LYDSSVTFGV+KQLQAEQGMAE++ ++A LE + K LE V ELRN VEV+EK SE +A+ DKKRK+E+DFLKYQGQHLD FL+Q+G
Sbjct: 10 PASLLKHDEPLFVGFDGADS-------------------------AAKPGTAAGGQLGEMVNSMLPPREWTEPTGTWMQYVSKAPASRTDVIAMQEALDAKLLERQARDAGICPVREDLYAQCFDELIRQLTLDGPERGLLLLRVRDEVRMTVDAYKVLYDSSVTFGVRKQLQAEQGMAELQGRVAELEAENKDLENRVLELRNGVEVVEKRASEHKAMADKKRKDEIDFLKYQGQHLDQFLRQLG 230
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: F0Y5N0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N0_AURAN) HSP 1 Score: 280 bits (717), Expect = 1.230e-92 Identity = 141/187 (75.40%), Postives = 166/187 (88.77%), Query Frame = 1
Query: 244 MVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIG 804
MVNSMLPPREWT+ +GTWMQYVSK+ ATR+ VI+LQE LDK+LL+RQA + GICPVREDLY+Q +DELIR +TLDGPERGLL LRVRDEIRMTIDAYK LYDSSVTFG++KQLQAEQGM+E+E +IA LE + K LE V ELRN VEVIEK E+E +AV+DKKRK+E+DFLKYQGQHLD+FL+Q+G
Sbjct: 1 MVNSMLPPREWTQTSGTWMQYVSKKTATRMDVISLQEDLDKRLLDRQARDAGICPVREDLYSQCYDELIRQITLDGPERGLLLLRVRDEIRMTIDAYKVLYDSSVTFGIRKQLQAEQGMSELEGRIAELEAENKDLENQVLELRNGVEVIEKRENEHKAVEDKKRKDEIDFLKYQGQHLDAFLRQLG 187
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A7S1GAQ8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAQ8_9STRA) HSP 1 Score: 265 bits (678), Expect = 5.720e-86 Identity = 138/192 (71.88%), Postives = 162/192 (84.38%), Query Frame = 1
Query: 235 LDDMVNSMLPPREWTEE-TGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGG 807
+++++NS+LPPR W +E WMQYVSK PA+RL VI LQE LD+KL+ERQA E GICPVREDLY+Q FDELIR VT++ PERGLL LRVRDEIRMTIDAYKTLY+SSVTFGV+KQLQAEQG+AEME +I L E KK L+ V ELRNKVEVIEK +ERR +++KKRKEE+DFLKYQGQHLD FLK +GG
Sbjct: 49 IEEVLNSILPPRMWADEGAADWMQYVSKTPASRLDVINLQEALDEKLMERQAREMGICPVREDLYSQCFDELIRQVTINSPERGLLLLRVRDEIRMTIDAYKTLYESSVTFGVRKQLQAEQGLAEMESKIEELSEAKKDLQNQVLELRNKVEVIEKRATERRQLEEKKRKEEIDFLKYQGQHLDQFLKTLGG 240
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A6G0XVN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVN6_9STRA) HSP 1 Score: 263 bits (672), Expect = 3.450e-85 Identity = 138/248 (55.65%), Postives = 176/248 (70.97%), Query Frame = 1
Query: 67 PQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGS 810
P++LVKFD PIF G S+ S+++D++N+MLP + W E+TG WM+YVS EP+TR VI LQEQ+D KL++RQA E+GICPVRED+Y+Q FDELIR VT++ PERGLL LR+RDEIRMT DAYKTLYDSS+TFGV+KQLQAEQGM +E++I L E+K+ E V EL NK+E+IEK +ERRA+ +K+ KEE++FLKYQGQHLD+FLK GGS
Sbjct: 7 PESLVKFDAPIFTGENHDGGKKTHPT----------------------SKIDPVSRIEDVLNAMLPAQSWKEDTGFWMRYVSAEPSTRFDVIKLQEQMDAKLIKRQARESGICPVREDIYSQCFDELIRQVTINSPERGLLLLRIRDEIRMTTDAYKTLYDSSITFGVRKQLQAEQGMGSIEDKILLLTEEKREYENKVLELTNKLEIIEKRSNERRALQEKRYKEEIEFLKYQGQHLDAFLKSAGGS 232
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A024UH61_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UH61_9STRA) HSP 1 Score: 261 bits (666), Expect = 2.990e-84 Identity = 140/248 (56.45%), Postives = 175/248 (70.56%), Query Frame = 1
Query: 67 PQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGS 810
P++LVK+D PIF G G K S+++D++N+MLPP+ W EETG WM+Y S EP+TR VI LQEQ+D KL++RQA E+GIC VRED+Y Q FDELIR VT++ PERGLL LR+RDEIRMT DAYKTLYDSS+TFGV+KQLQAEQGM +E++IA L E+K+ E V EL NK+EVIEK SERRA+ +K+ KEE++FLKYQGQHLD+FLK GG+
Sbjct: 7 PESLVKYDAPIFTG------------------EHNEGGKKAKPAPGTKIDP--VSRIEDVLNAMLPPQTWKEETGHWMRYTSAEPSTRFDVIKLQEQMDAKLIKRQARESGICNVREDIYAQCFDELIREVTINSPERGLLLLRIRDEIRMTTDAYKTLYDSSITFGVRKQLQAEQGMGSIEDKIALLAEEKREYENKVLELTNKLEVIEKRGSERRALQEKRYKEEIEFLKYQGQHLDAFLKSAGGA 234 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1280.1721.1 >prot_E-siliculosus-1a_F_contig1280.1721.1 ID=prot_E-siliculosus-1a_F_contig1280.1721.1|Name=mRNA_E-siliculosus-1a_F_contig1280.1721.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=272bp MDMDVGRGPEMTQQGMQFPMEIPQTLVKFDPPIFAGLEPSSDPNNGGDNAback to top mRNA from alignment at E-siliculosus-1a_F_contig1280:8223..11306+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1280.1721.1 ID=mRNA_E-siliculosus-1a_F_contig1280.1721.1|Name=mRNA_E-siliculosus-1a_F_contig1280.1721.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3084bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1280:8223..11306+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1280:8223..11306+ >mRNA_E-siliculosus-1a_F_contig1280.1721.1 ID=mRNA_E-siliculosus-1a_F_contig1280.1721.1|Name=mRNA_E-siliculosus-1a_F_contig1280.1721.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1632bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1280:8223..11306+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |