mRNA_E-siliculosus-1a_F_contig1280.1721.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1280.1721.1
Unique NamemRNA_E-siliculosus-1a_F_contig1280.1721.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: D8LEJ6_ECTSI (p28, 28 kDa light chain of axonemal inner dynein arms n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ6_ECTSI)

HSP 1 Score: 463 bits (1192), Expect = 1.020e-163
Identity = 249/271 (91.88%), Postives = 253/271 (93.36%), Query Frame = 1
Query:    1 MDMDVGRGPEMTQQGMQFPMEIPQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 813
            MD++VGRGP+MTQQGMQFPME+PQTLVKFDPPIFAGLEPSSDPNN             XXXXXXXXMG K QQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLD KLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAAL EDKK LELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK
Sbjct:    1 MDVNVGRGPDMTQQGMQFPMEVPQTLVKFDPPIFAGLEPSSDPNNGGDNALLMGGNGGXXXXXXXXMGGKGQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDNKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALGEDKKGLELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 271          
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A835YSJ6_9STRA (p28 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ6_9STRA)

HSP 1 Score: 317 bits (813), Expect = 1.480e-106
Identity = 168/255 (65.88%), Postives = 197/255 (77.25%), Query Frame = 1
Query:   49 QFPMEIPQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 813
            Q P  +P +LV++D PIF G+EP++                          G  +     +QL+DM+NSMLPPREWTEETGTWMQ VSK PATRL V+ LQE LDKKL ERQA +TGICPVR+DLY+QAFDELIR VTLDGPERGLL LRVRDEIRMTIDAY+TLYDSSV FG+KKQLQAEQGM EME +IA LEE K+ALE    ELRN+VE++EK E+E+R+V+DK+R+EEV+FLKYQGQHLDSFLKQIGGSK
Sbjct:    6 QHPNAVPDSLVRYDQPIFGGVEPATGHG-----------------------GNGTASSSIAQLEDMMNSMLPPREWTEETGTWMQCVSKNPATRLDVVTLQECLDKKLGERQARDTGICPVRDDLYSQAFDELIRQVTLDGPERGLLLLRVRDEIRMTIDAYRTLYDSSVVFGIKKQLQAEQGMDEMEAEIAQLEESKQALEYRAQELRNRVELMEKREAEQRSVEDKRRREEVEFLKYQGQHLDSFLKQIGGSK 237          
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A7S2UXS2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS2_9STRA)

HSP 1 Score: 317 bits (812), Expect = 3.530e-106
Identity = 171/270 (63.33%), Postives = 199/270 (73.70%), Query Frame = 1
Query:    7 MDVGRGPEMTQQG-MQFPMEIPQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 813
            MD   G     +G  Q P   P++LVKFD P+F GL+PSS                           +K+    ASQ+DDM+NSM+PPREWT+ +GTWMQY+SKE ATRL VI LQEQLDK+L+ERQA ET ICPVREDLY+Q FDELIRHVTLD PERGLL LRVRDEIRMTIDAYKTLYDSSVTFG+KKQLQAE GM++ME+QIA LE  KK  E    ELRNK+EVIEK E ERR +++KKRKEE+DFLKYQGQHLD+ +K +GGSK
Sbjct:    1 MDNASGQVRYDEGEQQDPANPPESLVKFDEPLFVGLQPSSHTK------------------AAAIANIKADGANASQIDDMMNSMIPPREWTDVSGTWMQYISKESATRLDVITLQEQLDKRLVERQARETDICPVREDLYSQCFDELIRHVTLDSPERGLLLLRVRDEIRMTIDAYKTLYDSSVTFGIKKQLQAEMGMSDMEKQIAILELTKKERENKTLELRNKLEVIEKREVERRGLEEKKRKEEIDFLKYQGQHLDTSIKHVGGSK 252          
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A7S2CCB2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CCB2_9STRA)

HSP 1 Score: 309 bits (792), Expect = 2.390e-103
Identity = 164/249 (65.86%), Postives = 188/249 (75.50%), Query Frame = 1
Query:   67 PQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 813
            P  LVK+DP +F G +P+++                           +      SQLDDMVNSMLPPREWT+E+GTWMQYVSK+ ATRL VI LQE LDK+LLERQA ETGICPVREDLY+Q FDELIR VTLDGPERGLL LRVRDEI+MTIDAYK LY+SSVTFGV+KQLQAEQGMAE+E +I  LE  KK LE  V ELRNKVEV EK  +ER+ ++DKKRKEE+DFLKYQGQHLDSFL+Q+GG K
Sbjct:   12 PDALVKYDPALFVGFDPATN----------------------DVKATRKADATPSQLDDMVNSMLPPREWTQESGTWMQYVSKDSATRLDVINLQEMLDKRLLERQARETGICPVREDLYSQCFDELIRQVTLDGPERGLLTLRVRDEIKMTIDAYKILYESSVTFGVRKQLQAEQGMAELESEIEGLEAAKKELENQVLELRNKVEVSEKRGNERKTLEDKKRKEEIDFLKYQGQHLDSFLRQLGGGK 238          
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A6V1KR45_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KR45_HETAK)

HSP 1 Score: 293 bits (749), Expect = 1.180e-96
Identity = 157/259 (60.62%), Postives = 190/259 (73.36%), Query Frame = 1
Query:   43 GMQFPMEIPQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKAS--QLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGSK 813
            G Q P   P++L+KFD PIF GL+PS+                            ++ +G+ +  QLDDM+NSMLPPREWTEE+GTWMQY+SKEPATRL VI LQE LDK L+ERQA ETGICPVREDLY+QAFDELIRHVTLD PERGLL LR RDE+RMT+DAYKTLY SSVTFGVKKQLQAE GM+EM  QI AL E ++A E   +ELR +++  EK  +ER+ ++ + R+ E+DFLKYQGQHLD FLK +GG+K
Sbjct:   11 GGQGPANPPESLLKFDEPIFVGLQPSNQNEGFKMP--------------------EAPKGELTNAQLDDMLNSMLPPREWTEESGTWMQYISKEPATRLDVITLQEHLDKCLVERQARETGICPVREDLYSQAFDELIRHVTLDSPERGLLLLRARDEVRMTVDAYKTLYGSSVTFGVKKQLQAELGMSEMANQIEALGEARRARERRCAELRARLDAAEKRAAERQQLEGQARRAEIDFLKYQGQHLDGFLKHVGGTK 249          
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A8J2S909_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S909_9STRA)

HSP 1 Score: 283 bits (725), Expect = 3.130e-93
Identity = 151/246 (61.38%), Postives = 176/246 (71.54%), Query Frame = 1
Query:   67 PQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIG 804
            P +L+K D P+F G + +                             K       QL +MVNSMLPPREWTE TGTWMQYVSK PA+R  VIA+QE LD KLLERQA + GICPVREDLY Q FDELIR +TLDGPERGLL LRVRDE+RMT+DAYK LYDSSVTFGV+KQLQAEQGMAE++ ++A LE + K LE  V ELRN VEV+EK  SE +A+ DKKRK+E+DFLKYQGQHLD FL+Q+G
Sbjct:   10 PASLLKHDEPLFVGFDGADS-------------------------AAKPGTAAGGQLGEMVNSMLPPREWTEPTGTWMQYVSKAPASRTDVIAMQEALDAKLLERQARDAGICPVREDLYAQCFDELIRQLTLDGPERGLLLLRVRDEVRMTVDAYKVLYDSSVTFGVRKQLQAEQGMAELQGRVAELEAENKDLENRVLELRNGVEVVEKRASEHKAMADKKRKDEIDFLKYQGQHLDQFLRQLG 230          
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: F0Y5N0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N0_AURAN)

HSP 1 Score: 280 bits (717), Expect = 1.230e-92
Identity = 141/187 (75.40%), Postives = 166/187 (88.77%), Query Frame = 1
Query:  244 MVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIG 804
            MVNSMLPPREWT+ +GTWMQYVSK+ ATR+ VI+LQE LDK+LL+RQA + GICPVREDLY+Q +DELIR +TLDGPERGLL LRVRDEIRMTIDAYK LYDSSVTFG++KQLQAEQGM+E+E +IA LE + K LE  V ELRN VEVIEK E+E +AV+DKKRK+E+DFLKYQGQHLD+FL+Q+G
Sbjct:    1 MVNSMLPPREWTQTSGTWMQYVSKKTATRMDVISLQEDLDKRLLDRQARDAGICPVREDLYSQCYDELIRQITLDGPERGLLLLRVRDEIRMTIDAYKVLYDSSVTFGIRKQLQAEQGMSELEGRIAELEAENKDLENQVLELRNGVEVIEKRENEHKAVEDKKRKDEIDFLKYQGQHLDAFLRQLG 187          
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A7S1GAQ8_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAQ8_9STRA)

HSP 1 Score: 265 bits (678), Expect = 5.720e-86
Identity = 138/192 (71.88%), Postives = 162/192 (84.38%), Query Frame = 1
Query:  235 LDDMVNSMLPPREWTEE-TGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGG 807
            +++++NS+LPPR W +E    WMQYVSK PA+RL VI LQE LD+KL+ERQA E GICPVREDLY+Q FDELIR VT++ PERGLL LRVRDEIRMTIDAYKTLY+SSVTFGV+KQLQAEQG+AEME +I  L E KK L+  V ELRNKVEVIEK  +ERR +++KKRKEE+DFLKYQGQHLD FLK +GG
Sbjct:   49 IEEVLNSILPPRMWADEGAADWMQYVSKTPASRLDVINLQEALDEKLMERQAREMGICPVREDLYSQCFDELIRQVTINSPERGLLLLRVRDEIRMTIDAYKTLYESSVTFGVRKQLQAEQGLAEMESKIEELSEAKKDLQNQVLELRNKVEVIEKRATERRQLEEKKRKEEIDFLKYQGQHLDQFLKTLGG 240          
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A6G0XVN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVN6_9STRA)

HSP 1 Score: 263 bits (672), Expect = 3.450e-85
Identity = 138/248 (55.65%), Postives = 176/248 (70.97%), Query Frame = 1
Query:   67 PQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGS 810
            P++LVKFD PIF G                                  S+    S+++D++N+MLP + W E+TG WM+YVS EP+TR  VI LQEQ+D KL++RQA E+GICPVRED+Y+Q FDELIR VT++ PERGLL LR+RDEIRMT DAYKTLYDSS+TFGV+KQLQAEQGM  +E++I  L E+K+  E  V EL NK+E+IEK  +ERRA+ +K+ KEE++FLKYQGQHLD+FLK  GGS
Sbjct:    7 PESLVKFDAPIFTGENHDGGKKTHPT----------------------SKIDPVSRIEDVLNAMLPAQSWKEDTGFWMRYVSAEPSTRFDVIKLQEQMDAKLIKRQARESGICPVREDIYSQCFDELIRQVTINSPERGLLLLRIRDEIRMTTDAYKTLYDSSITFGVRKQLQAEQGMGSIEDKILLLTEEKREYENKVLELTNKLEIIEKRSNERRALQEKRYKEEIEFLKYQGQHLDAFLKSAGGS 232          
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Match: A0A024UH61_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UH61_9STRA)

HSP 1 Score: 261 bits (666), Expect = 2.990e-84
Identity = 140/248 (56.45%), Postives = 175/248 (70.56%), Query Frame = 1
Query:   67 PQTLVKFDPPIFAGLEPSSDPNNXXXXXXXXXXXXXXXXXXXXXMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWMQYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELIRHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGMAEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEVDFLKYQGQHLDSFLKQIGGS 810
            P++LVK+D PIF G                               G K      S+++D++N+MLPP+ W EETG WM+Y S EP+TR  VI LQEQ+D KL++RQA E+GIC VRED+Y Q FDELIR VT++ PERGLL LR+RDEIRMT DAYKTLYDSS+TFGV+KQLQAEQGM  +E++IA L E+K+  E  V EL NK+EVIEK  SERRA+ +K+ KEE++FLKYQGQHLD+FLK  GG+
Sbjct:    7 PESLVKYDAPIFTG------------------EHNEGGKKAKPAPGTKIDP--VSRIEDVLNAMLPPQTWKEETGHWMRYTSAEPSTRFDVIKLQEQMDAKLIKRQARESGICNVREDIYAQCFDELIREVTINSPERGLLLLRIRDEIRMTTDAYKTLYDSSITFGVRKQLQAEQGMGSIEDKIALLAEEKREYENKVLELTNKLEVIEKRGSERRALQEKRYKEEIEFLKYQGQHLDAFLKSAGGA 234          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1280.1721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ6_ECTSI1.020e-16391.88p28, 28 kDa light chain of axonemal inner dynein a... [more]
A0A835YSJ6_9STRA1.480e-10665.88p28 protein n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S2UXS2_9STRA3.530e-10663.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CCB2_9STRA2.390e-10365.86Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6V1KR45_HETAK1.180e-9660.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2S909_9STRA3.130e-9361.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y5N0_AURAN1.230e-9275.40Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1GAQ8_9STRA5.720e-8671.88Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6G0XVN6_9STRA3.450e-8555.65Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UH61_9STRA2.990e-8456.45Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1280contigE-siliculosus-1a_F_contig1280:8223..11306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size816
Model size816
Exons5
Ec32 orthologEc-21_004400.1
Ec32 ortholog descriptionAxonemal dynein light chain
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko04812
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG4001@1,KOG4001@2759
EggNOG free text desc.dynein heavy chain binding
KEGG Pathwayko05016,map05016
KEGG koko:K10410
Seed eggNOG ortholog2880.D8LEJ6
Seed ortholog evalue2.5e-128
Seed ortholog score464.9
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1280.1721.1prot_E-siliculosus-1a_F_contig1280.1721.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1280 8223..11306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927801.8271668-CDS-E-siliculosus-1a_F_contig1280:8222..85731622927801.8271668-CDS-E-siliculosus-1a_F_contig1280:8222..8573Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1280 8223..8573 +
1696318685.8265252-CDS-E-siliculosus-1a_F_contig1280:8222..85731696318685.8265252-CDS-E-siliculosus-1a_F_contig1280:8222..8573Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1280 8223..8573 +
1622927801.8598347-CDS-E-siliculosus-1a_F_contig1280:9706..97941622927801.8598347-CDS-E-siliculosus-1a_F_contig1280:9706..9794Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1280 9707..9794 +
1696318685.835813-CDS-E-siliculosus-1a_F_contig1280:9706..97941696318685.835813-CDS-E-siliculosus-1a_F_contig1280:9706..9794Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1280 9707..9794 +
1622927801.8734083-CDS-E-siliculosus-1a_F_contig1280:10265..104441622927801.8734083-CDS-E-siliculosus-1a_F_contig1280:10265..10444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1280 10266..10444 +
1696318685.8432336-CDS-E-siliculosus-1a_F_contig1280:10265..104441696318685.8432336-CDS-E-siliculosus-1a_F_contig1280:10265..10444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1280 10266..10444 +
1622927801.8923647-CDS-E-siliculosus-1a_F_contig1280:10789..108521622927801.8923647-CDS-E-siliculosus-1a_F_contig1280:10789..10852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1280 10790..10852 +
1696318685.8513167-CDS-E-siliculosus-1a_F_contig1280:10789..108521696318685.8513167-CDS-E-siliculosus-1a_F_contig1280:10789..10852Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1280 10790..10852 +
1622927801.904955-CDS-E-siliculosus-1a_F_contig1280:11171..113061622927801.904955-CDS-E-siliculosus-1a_F_contig1280:11171..11306Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1280 11172..11306 +
1696318685.8588743-CDS-E-siliculosus-1a_F_contig1280:11171..113061696318685.8588743-CDS-E-siliculosus-1a_F_contig1280:11171..11306Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1280 11172..11306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1280.1721.1

>prot_E-siliculosus-1a_F_contig1280.1721.1 ID=prot_E-siliculosus-1a_F_contig1280.1721.1|Name=mRNA_E-siliculosus-1a_F_contig1280.1721.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=272bp
MDMDVGRGPEMTQQGMQFPMEIPQTLVKFDPPIFAGLEPSSDPNNGGDNA
LLMGGNGGGSNRGGGGMGVKSQQGKASQLDDMVNSMLPPREWTEETGTWM
QYVSKEPATRLAVIALQEQLDKKLLERQALETGICPVREDLYTQAFDELI
RHVTLDGPERGLLCLRVRDEIRMTIDAYKTLYDSSVTFGVKKQLQAEQGM
AEMEEQIAALEEDKKALELHVSELRNKVEVIEKGESERRAVDDKKRKEEV
DFLKYQGQHLDSFLKQIGGSK*
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mRNA from alignment at E-siliculosus-1a_F_contig1280:8223..11306+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1280.1721.1 ID=mRNA_E-siliculosus-1a_F_contig1280.1721.1|Name=mRNA_E-siliculosus-1a_F_contig1280.1721.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3084bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1280:8223..11306+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACATGGACGTAGGGAGAGGGCCGGAGATGACGCAGCAGGGCATGCA GTTCCCGATGGAGATACCGCAAACACTCGTAAAATTTGATCCTCCGATCT TTGCCGGCCTAGAGCCTTCGTCCGATCCAAACAACGGCGGCGACAACGCA CTATTGATGGGAGGAAACGGGGGAGGCAGCAACCGGGGAGGTGGCGGCAT GGGGGTCAAAAGTCAGCAGGGTAAGGCGTCGCAGCTAGACGATATGGTGA ATTCTATGTTGCCTCCGAGAGAGTGGACAGAGGAGACGGGGACGTGGATG CAGTATGTCAGCAAGGAACCGGCGACGCGGTTGGCGGTCATCGCACTCCA GGTATCCTGACGAAAAGAGGAAGAGACATGTTACATACGACATGAACGGA CGCTGGACGGGGAGCCATGATCCGGCATACAATAGTAGATTGTGAAGTGA AGCGTGTTGGCTCTCGAAGTGCCACTCACGTGTACACCAAATTCGTGCAT CACTTTCATCTTTTTCGCCAACACGTCGTATGAGATGTAGACTATCGTGG TCGATTGGGCCAGAAACAGGTCAAAGTCGTATCTTAGGTCCTGTAGAAGG AGCACGCCGTTTTGCAAACCGCGCGGGTAGGGTAATGGGTTCGCCAGGTG CACTGCAAAGCTCTCTTTTGACGCTGAAGGATTATGTGCTATTAATGTAC CTGGCTAAAATACAACATAGCGAAGTCAAACAAACGTTATCTGCCAAACT TACCTGTGGCTGCTGTTGCTGCTGCAGCGGCTCTGCTATTGCTACTGTCT GTATGGATGCCTGCCATCCAGGCGATTGGTCTTCCGTAGGTTTGCTTCCA GCACCTGTAAACACCGCTACTTTGTCTCTCACATCTTGAATCAACTTCGT CTACATTCCAGTCGTAGCTCGGACTGAATAGAAAACATCCTCTGCGGTGC AGCCTGCAAACGTGCAATGTTTTTCATCGTGAGATACTGGTGCGGTGCTC CAGTATAAACGTTAGCGTCCTGCGTTGTGTGTGTTATGCATCAGCCCGAC CGCGCTAACCGACTGGGCAACGAAAATGCGTCAGTGCCAGTGGAAGGGAG GTGTTTGTCTAGACATACATGTGTTGTCATGTCTATTTTCTGGACGACCA GGATTGATTACGTTTGTTTTAGGTACACCGGCTGGCGCCACATACAGCAG ACCCCGCGCTAAAAAGTGTACATTTTCTGAGAGGCCTGAACGGACGAGCT CCTGTCGTAGGTCGGCAACATAACAGTTGCACTGCCATATAAACGATCCG TGCTTCGACCCAAAACGTTTCCTCGTTAATATTGTGACTGATCTCTTGTC AGCAGCTGGCACATGTATTTTGTGGCAAGAGACTCCAAACATTGAATTGC TGCGGTTCATTTCCTTGGTGACCAGCGCCCACCTCTCATGCCTTTACCGC GCTATTCCCGTGCAACCTTGTGCTCGTTACTCAGGAGCAATTGGACAAGA AGCTGCTGGAGAGACAGGCGTTGGAAACAGGCATTTGCCCCGTCCGGGAA GATCTGTATACTCAGGCGTTCGGTAAGCGCTGGTAGCCAAGACACAGACT CCTGAGTAATAAAGGTGTCATCGTTGTTTTCAACAGGTTGGATGTGGACA GCTCCCCCACCACTAACTGGCGTTGGAGTGGGTTTCTCGAGGAAGTGTGC CTCCTCTAGCCACTGAGGCGGGCCAAAAACGGACAGCAGCAGCATCTGAG ATAATGCCCACTTGATGCGACGCAAGATAAGCCCAAATGTTTTGGAATGA AAGCGCACCATTCGTAGGTGATTCTCTGGGGTTCTTTCCTCTTAGTTTCC TTCACGTCTGGATGAATGAGCTTCGTTCGCAGGATGTTCGACGAGTTTCG CCTACAGCCTAGATTTTGTTTTAACTCAGCGGCGAGCACAGCACGGAGTG GTCCATGCAGCAGCCAACTGCTACGTCGACGAAGCCCATCCACTCCAACA TTTGTTAACCCCTATCGACCGCACATCCTACGAATCGTCGCAGACGAACT TATCCGACACGTGACACTAGACGGTCCCGAGCGCGGGCTGCTGTGCCTGC GGGTGCGCGACGAGATCAGAATGACTATCGACGCGTACAAGACTCTGTAC GACAGCAGCGTGACCTTCGGCGTCAAGAAGCAGCTGCAAGCGGAGCAGGG AATGGCAGAGATGGAGGAGCAGGTCCGGTGTCCAGCTCTGTTGCACTACG GCCTAGCGTGAAACAAAAGAGAGAAAAACATATTATGCTGTTGTTGTTGT TGCTGTTGCTGCCGTCGCCCGAAAAAGGTGACCTTGATAAGACTGCACAA CGAGCACGGTAAAATATCGAAAATGTCTCGTGGTCCACGATTGATTATGC AATTGTAGATGCATGGGCTGCCTTGACGTACGTAGATTCAAAGTGTGGCA CGGATCACCTGTCTCTTACGTACCCAATACGGATACTTCGATGTGTCCCT TCATTTTGTTTCAAACCCGGTCGGCGCTTTTCGTTGCACTAATATCCGTT TGGGGTGCTGCTGTCAGATTGCTGCATTGGAGGAGGACAAAAAAGCGCTG GAGTTACACGTATCGGAACTGCGAAACAAGGTAAGCGAAACAGATCCTTG TGGCGCATTGTTTATTACAAGACGCGCAACCTTACACAAACCCAAGTTGG TGCATCCTTTTTCAAGCACAACGTCGCCGAGATTGTGCGTGACGCCTGGC ACCTCACGCAGTTTCAGCGTCGCCCCACGCGAACTAGGATGCAGGTTGTA GACAAACGTCGTGCACACTGCCAAAGTCCATCCACCTCCGATCCGTGTGC CGTGGATGCTCGGCCTGGTCATGACTTTGACAGAAACGGGCCTCCTCGCC TCGCCATTGCTACTGCGCTTCGTTTGCGTGTCTGTGGGTGGGTGCGTAGG TTGAGGTGATTGAGAAGGGGGAGAGCGAGCGACGCGCGGTAGACGACAAG AAGCGGAAGGAAGAAGTGGACTTTCTCAAGTACCAGGGGCAGCACCTTGA CTCCTTCCTTAAGCAGATCGGCGGCAGCAAATAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1280:8223..11306+

>mRNA_E-siliculosus-1a_F_contig1280.1721.1 ID=mRNA_E-siliculosus-1a_F_contig1280.1721.1|Name=mRNA_E-siliculosus-1a_F_contig1280.1721.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1632bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1280:8223..11306+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGACATGGACGTAGGGAGAGGGCCGGAGATGACGCAGCAGGGCATGCA
GTTCCCGATGGAGATACCGCAAACACTCGTAAAATTTGATCCTCCGATCT
TTGCCGGCCTAGAGCCTTCGTCCGATCCAAACAACGGCGGCGACAACGCA
CTATTGATGGGAGGAAACGGGGGAGGCAGCAACCGGGGAGGTGGCGGCAT
GGGGGTCAAAAGTCAGCAGGGTAAGGCGTCGCAGCTAGACGATATGGTGA
ATTCTATGTTGCCTCCGAGAGAGTGGACAGAGGAGACGGGGACGTGGATG
CAGTATGTCAGCAAGGAACCGGCGACGCGGTTGGCGGTCATCGCACTCCA
GATGGACATGGACGTAGGGAGAGGGCCGGAGATGACGCAGCAGGGCATGC
AGTTCCCGATGGAGATACCGCAAACACTCGTAAAATTTGATCCTCCGATC
TTTGCCGGCCTAGAGCCTTCGTCCGATCCAAACAACGGCGGCGACAACGC
ACTATTGATGGGAGGAAACGGGGGAGGCAGCAACCGGGGAGGTGGCGGCA
TGGGGGTCAAAAGTCAGCAGGGTAAGGCGTCGCAGCTAGACGATATGGTG
AATTCTATGTTGCCTCCGAGAGAGTGGACAGAGGAGACGGGGACGTGGAT
GCAGTATGTCAGCAAGGAACCGGCGACGCGGTTGGCGGTCATCGCACTCC
AGGAGCAATTGGACAAGAAGCTGCTGGAGAGACAGGCGTTGGAAACAGGC
ATTTGCCCCGTCCGGGAAGATCTGTATACTCAGGCGTTCGGAGCAATTGG
ACAAGAAGCTGCTGGAGAGACAGGCGTTGGAAACAGGCATTTGCCCCGTC
CGGGAAGATCTGTATACTCAGGCGTTCGACGAACTTATCCGACACGTGAC
ACTAGACGGTCCCGAGCGCGGGCTGCTGTGCCTGCGGGTGCGCGACGAGA
TCAGAATGACTATCGACGCGTACAAGACTCTGTACGACAGCAGCGTGACC
TTCGGCGTCAAGAAGCAGCTGCAAGCGGAGCAGGGAATGGCAGAGATGGA
GGAGCAGACGAACTTATCCGACACGTGACACTAGACGGTCCCGAGCGCGG
GCTGCTGTGCCTGCGGGTGCGCGACGAGATCAGAATGACTATCGACGCGT
ACAAGACTCTGTACGACAGCAGCGTGACCTTCGGCGTCAAGAAGCAGCTG
CAAGCGGAGCAGGGAATGGCAGAGATGGAGGAGCAGATTGCTGCATTGGA
GGAGGACAAAAAAGCGCTGGAGTTACACGTATCGGAACTGCGAAACAAGA
TTGCTGCATTGGAGGAGGACAAAAAAGCGCTGGAGTTACACGTATCGGAA
CTGCGAAACAAGGTTGAGGTGATTGAGAAGGGGGAGAGCGAGCGACGCGC
GGTAGACGACAAGAAGCGGAAGGAAGAAGTGGACTTTCTCAAGTACCAGG
GGCAGCACCTTGACTCCTTCCTTAAGCAGATCGGCGGCAGCAAATAGGTT
GAGGTGATTGAGAAGGGGGAGAGCGAGCGACGCGCGGTAGACGACAAGAA
GCGGAAGGAAGAAGTGGACTTTCTCAAGTACCAGGGGCAGCACCTTGACT
CCTTCCTTAAGCAGATCGGCGGCAGCAAATAG
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