mRNA_E-siliculosus-1a_F_contig128.1718.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig128.1718.1
Unique NamemRNA_E-siliculosus-1a_F_contig128.1718.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1718.1 vs. uniprot
Match: D8LTT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT4_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 2.820e-102
Identity = 169/184 (91.85%), Postives = 175/184 (95.11%), Query Frame = 1 
Query:    1 MAAEQAVAAAAGKTPPQQADDAGGMASRLMTAELTLADTEACLVEVQGELSSERANNDKLKEKAKALEEALETCKKGREEAVQEVAKQGEVKIAALKARLRQAEHARAKDEKRWSSRVAGLESEREQASCLAEGLEKILVKQKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNSYAYSLPE 552
            MAAEQAVAAAA KTPPQQAD  GGM S+LMTAELTLADTEACLVEVQGEL SER NND+LKEKAKALEEAL+TCKKGREEAVQ+V+KQGEVKI ALKARLR AEHARAKDEKRWSSRVAGLESEREQASCLAEGLEKILVK+KSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNSYAYS PE
Sbjct:    1 MAAEQAVAAAARKTPPQQADQPGGMTSKLMTAELTLADTEACLVEVQGELLSERENNDRLKEKAKALEEALKTCKKGREEAVQQVSKQGEVKITALKARLRLAEHARAKDEKRWSSRVAGLESEREQASCLAEGLEKILVKEKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNSYAYSPPE 184
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1718.1 vs. uniprot
Match: A0A6H5KF01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF01_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 3.900e-99
Identity = 168/184 (91.30%), Postives = 175/184 (95.11%), Query Frame = 1 
Query:    1 MAAEQAVAAAAGKTPPQQADDAGGMASRLMTAELTLADTEACLVEVQGELSSERANNDKLKEKAKALEEALETCKKGREEAVQEVAKQGEVKIAALKARLRQAEHARAKDEKRWSSRVAGLESEREQASCLAEGLEKILVKQKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNSYAYSLPE 552
            MAAEQAVAA AGKTP QQ  +AGGMASRLMTAEL L DTEACLVEVQGELSSER NNDKLKEKA ALEEALETCKKGREEAVQ+V+KQGEV+IAALKARLRQAEHARAKDEKRWS+RVAGLESEREQASCLAEGLEKILV++KSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPN YAYSLPE
Sbjct:  197 MAAEQAVAATAGKTPQQQPHEAGGMASRLMTAELALLDTEACLVEVQGELSSERENNDKLKEKANALEEALETCKKGREEAVQQVSKQGEVEIAALKARLRQAEHARAKDEKRWSTRVAGLESEREQASCLAEGLEKILVQEKSAASRKEARLRTLFRRLDFLDSAEQGTVDDDPNPYAYSLPE 380
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig128.1718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTT4_ECTSI2.820e-10291.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF01_9PHAE3.900e-9991.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig128contigE-siliculosus-1a_F_contig128:73807..74361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size555
Model size555
Exons1
Ec32 orthologEc-28_002890.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927801.0858526-CDS-E-siliculosus-1a_F_contig128:73806..743611622927801.0858526-CDS-E-siliculosus-1a_F_contig128:73806..74361Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 73807..74361 +
1696318685.5401187-CDS-E-siliculosus-1a_F_contig128:73806..743611696318685.5401187-CDS-E-siliculosus-1a_F_contig128:73806..74361Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 73807..74361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig128.1718.1prot_E-siliculosus-1a_F_contig128.1718.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig128 73807..74361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig128.1718.1

>prot_E-siliculosus-1a_F_contig128.1718.1 ID=prot_E-siliculosus-1a_F_contig128.1718.1|Name=mRNA_E-siliculosus-1a_F_contig128.1718.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=185bp
MAAEQAVAAAAGKTPPQQADDAGGMASRLMTAELTLADTEACLVEVQGEL
SSERANNDKLKEKAKALEEALETCKKGREEAVQEVAKQGEVKIAALKARL
RQAEHARAKDEKRWSSRVAGLESEREQASCLAEGLEKILVKQKSAASRKE
ARLRTLFRRLDFLDSAEQGTVDDDPNSYAYSLPE*
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mRNA from alignment at E-siliculosus-1a_F_contig128:73807..74361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig128.1718.1 ID=mRNA_E-siliculosus-1a_F_contig128.1718.1|Name=mRNA_E-siliculosus-1a_F_contig128.1718.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=555bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:73807..74361+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGCAGAACAGGCCGTAGCAGCGGCTGCGGGGAAGACCCCGCCGCA
GCAGGCTGACGACGCAGGGGGCATGGCGAGCAGGCTGATGACAGCGGAGT
TAACCCTGGCCGATACGGAGGCGTGCCTGGTAGAGGTCCAGGGAGAGTTG
TCGTCGGAGCGCGCGAACAACGATAAGCTAAAGGAGAAGGCTAAAGCGCT
CGAGGAGGCCTTGGAAACGTGCAAGAAGGGGCGAGAAGAAGCTGTCCAAG
AGGTGGCCAAACAAGGGGAGGTCAAGATCGCCGCGCTCAAAGCACGCCTG
CGTCAAGCGGAGCACGCCCGAGCAAAGGATGAGAAACGGTGGTCGAGCAG
GGTGGCAGGTCTAGAGAGCGAGCGGGAACAAGCCAGCTGTCTTGCCGAGG
GGCTCGAGAAGATCTTGGTGAAGCAAAAATCCGCCGCGTCTCGAAAGGAG
GCGAGGCTTAGGACTTTGTTCAGGAGGCTTGATTTTCTGGACTCGGCGGA
GCAAGGCACAGTTGACGACGACCCCAACTCGTATGCTTACAGTCTCCCAG
AGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig128:73807..74361+

>mRNA_E-siliculosus-1a_F_contig128.1718.1 ID=mRNA_E-siliculosus-1a_F_contig128.1718.1|Name=mRNA_E-siliculosus-1a_F_contig128.1718.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:73807..74361+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGGCAGAACAGGCCGTAGCAGCGGCTGCGGGGAAGACCCCGCCGCA
GCAGGCTGACGACGCAGGGGGCATGGCGAGCAGGCTGATGACAGCGGAGT
TAACCCTGGCCGATACGGAGGCGTGCCTGGTAGAGGTCCAGGGAGAGTTG
TCGTCGGAGCGCGCGAACAACGATAAGCTAAAGGAGAAGGCTAAAGCGCT
CGAGGAGGCCTTGGAAACGTGCAAGAAGGGGCGAGAAGAAGCTGTCCAAG
AGGTGGCCAAACAAGGGGAGGTCAAGATCGCCGCGCTCAAAGCACGCCTG
CGTCAAGCGGAGCACGCCCGAGCAAAGGATGAGAAACGGTGGTCGAGCAG
GGTGGCAGGTCTAGAGAGCGAGCGGGAACAAGCCAGCTGTCTTGCCGAGG
GGCTCGAGAAGATCTTGGTGAAGCAAAAATCCGCCGCGTCTCGAAAGGAG
GCGAGGCTTAGGACTTTGTTCAGGAGGCTTGATTTTCTGGACTCGGCGGA
GCAAGGCACAGTTGACGACGACCCCAACTCGTATGCTTACAGTCTCCCAG
AGTAGATGGCGGCAGAACAGGCCGTAGCAGCGGCTGCGGGGAAGACCCCG
CCGCAGCAGGCTGACGACGCAGGGGGCATGGCGAGCAGGCTGATGACAGC
GGAGTTAACCCTGGCCGATACGGAGGCGTGCCTGGTAGAGGTCCAGGGAG
AGTTGTCGTCGGAGCGCGCGAACAACGATAAGCTAAAGGAGAAGGCTAAA
GCGCTCGAGGAGGCCTTGGAAACGTGCAAGAAGGGGCGAGAAGAAGCTGT
CCAAGAGGTGGCCAAACAAGGGGAGGTCAAGATCGCCGCGCTCAAAGCAC
GCCTGCGTCAAGCGGAGCACGCCCGAGCAAAGGATGAGAAACGGTGGTCG
AGCAGGGTGGCAGGTCTAGAGAGCGAGCGGGAACAAGCCAGCTGTCTTGC
CGAGGGGCTCGAGAAGATCTTGGTGAAGCAAAAATCCGCCGCGTCTCGAA
AGGAGGCGAGGCTTAGGACTTTGTTCAGGAGGCTTGATTTTCTGGACTCG
GCGGAGCAAGGCACAGTTGACGACGACCCCAACTCGTATGCTTACAGTCT
CCCAGAGTAG
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