mRNA_E-siliculosus-1a_F_contig128.1717.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig128.1717.1
Unique NamemRNA_E-siliculosus-1a_F_contig128.1717.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1717.1 vs. uniprot
Match: D8LTT3_ECTSI (Eukaryotic translation initiation factor 4E-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTT3_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 3.290e-139
Identity = 193/194 (99.48%), Postives = 193/194 (99.48%), Query Frame = 3 
Query:   72 MANGSAEQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACLADRNLHEKLMPSFDWKAHGGR 653
            MANGSAEQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENS GGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACLADRNLHEKLMPSFDWKAHGGR
Sbjct:    1 MANGSAEQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACLADRNLHEKLMPSFDWKAHGGR 194
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1717.1 vs. uniprot
Match: A0A835ZBP0_9STRA (Eukaryotic translation initiation factor 4E-like 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP0_9STRA)

HSP 1 Score: 259 bits (661), Expect = 2.430e-81
Identity = 115/182 (63.19%), Postives = 141/182 (77.47%), Query Frame = 3 
Query:   99 HPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACLADRNLHEKLMPSFDWKAH 644
            HPLQN+WCIWEH+ +K+S+DWG +M SL EF TVEDFW+ YNN+PKPSQV FDG  RK+VGDR I+S+SIFKKGI+PEWE P N++GGEW  R ++ P  LD  WE++VLGL+GET+D  DEICGARVVDKS+     YRFELWLR+ +  T ARL ERL +CLAD N   K +P F +K H
Sbjct:   11 HPLQNSWCIWEHEASKNSSDWGSNMTSLGEFNTVEDFWRFYNNIPKPSQVFFDGKSRKRVGDRQIESFSIFKKGIRPEWEDPANARGGEWSCRERLQPIVLDTLWESLVLGLIGETIDWADEICGARVVDKSRGKDTYYRFELWLRAREPGTTARLKERLLSCLADGNPSTKGLPDFSFKDH 192
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1717.1 vs. uniprot
Match: A0A7S2XVT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVT5_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.250e-61
Identity = 91/182 (50.00%), Postives = 123/182 (67.58%), Query Frame = 3 
Query:   99 HPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACLADRNLHEKLMPSFDWKAH 644
            HPL+NTW IWEH+  K+  DW  +MQ +  FATVEDFW  YN++PKPS + +DG  RK+VGDR ++S SIFK+GI PEWE P N++GGE+  R    P  LD  WEN+++G++GET+D  D I GARVVDKSK    VY+ ELW++S + +    L   +   + D  + +KLM  F+WK H
Sbjct:    9 HPLENTWSIWEHRATKNQGDWAGNMQKICTFATVEDFWAYYNHIPKPSAIFYDGQTRKRVGDRQLESLSIFKEGINPEWEDPVNAKGGEFSCRKTFDPVTLDKLWENLLMGIIGETIDWADHISGARVVDKSKGTRAVYKLELWVKSKEMDANETLKSNMLNVIFD-GIEQKLMVDFEWKKH 189
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1717.1 vs. uniprot
Match: R1BIV2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BIV2_EMIHU)

HSP 1 Score: 190 bits (483), Expect = 7.450e-55
Identity = 83/164 (50.61%), Postives = 110/164 (67.07%), Query Frame = 3 
Query:   99 HPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACL 590
            H L++ W IWEH+    +  + D+M  L E ATVEDFW+ +NN+PKPS++ +DG  RKK   R ++++S+FKK IKPEWE P N  G EW  R   T   LD FW ++VLG++GET+D GDEICGARVVDKS N   +YR ELW R ND   +  LL +++  L
Sbjct:    8 HFLESEWVIWEHRAPDKNKSYEDNMAKLCEVATVEDFWRAWNNIPKPSEIFYDGRTRKKFASRTVEAFSVFKKNIKPEWEDPANRSGAEWYCRRAFTMPQLDEFWLHIVLGMIGETLDAGDEICGARVVDKSVNGRTMYRLELWFRKNDDALSKELLAKMQEAL 171
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1717.1 vs. uniprot
Match: A0A2R5GD67_9STRA (Eukaryotic translation initiation factor 4E n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GD67_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.110e-54
Identity = 93/189 (49.21%), Postives = 119/189 (62.96%), Query Frame = 3 
Query:   84 SAEQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDG-SMRKKVGDRVIDSYSIFKKGIKPEWEAPENSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACLADRNLHEKLMPSFDWKAHG 647
            +A+ LHPLQNTW  WEH+   + +D+G  M  L EF TVEDFW+  NN+P+PS+V +   S  KK  DR ID +S+FK GI+PEWE   N  GGE+  R  M P  LD  WE ++LGLVGET+D GDEICG RVVDKSK+N   YR E+W RS D +    L  +++ CL    L E +  +     HG
Sbjct:    6 AAKGLHPLQNTWAFWEHRKGGTGSDYGSKMFQLGEFETVEDFWRFKNNLPQPSEVFYTPQSGHKKFVDREIDGFSMFKGGIRPEWEDKANMYGGEFFCRQTMAPAQLDNAWEKLLLGLVGETIDNGDEICGVRVVDKSKSNRPTYRLEMWFRSRDKDVLEHLRTQVQKCLGANLLKEYMEHNVAMNTHG 194
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1717.1 vs. uniprot
Match: A0A7S3EX75_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EX75_9EUKA)

HSP 1 Score: 187 bits (474), Expect = 2.830e-53
Identity = 87/178 (48.88%), Postives = 118/178 (66.29%), Query Frame = 3 
Query:   69 VMANGSAEQ---LHPLQNTWCIWEHKVA-KSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACL 590
            ++ NG A +   LH L++ W +WEH+   K+S  + D+M+ L E ATVEDFW  +NN+PKPSQ+ FDG  +K+  +R ++S+S+FKK IKPEWE P N  G EW  R     Q LD FW+N+ LG++GET+D GDEICGARVVDK      +YR ELW +  D   A  LL R+++ L
Sbjct:   12 MVGNGEAMKPNGLHFLESEWVLWEHRSPDKNSKSYEDNMEKLCEMATVEDFWCAWNNIPKPSQIFFDGKTKKRFANRSVESFSLFKKNIKPEWEDPANRAGAEWFCRRNFPMQQLDDFWQNLALGMIGETIDHGDEICGARVVDKCAGGRCMYRLELWFKKKDQGIADELLGRMQSVL 189
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1717.1 vs. uniprot
Match: A0A7S0HHF8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HHF8_9EUKA)

HSP 1 Score: 186 bits (473), Expect = 1.240e-52
Identity = 84/165 (50.91%), Postives = 111/165 (67.27%), Query Frame = 3 
Query:   99 HPLQNTWCIWEHKVA-KSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACL 590
            H L++ W +WEH+   K+S  + D+M  L EFAT+EDFW+++NN+PKPS + +DG  +KK  DR ++S+S+FKKG+KPEWE   N  G EW  R       LD FW+++VLG+VGET+D  DEICGARVVDKS     +YR ELW R  D   A  LLER+   L
Sbjct:   62 HFLESEWVMWEHRAPDKNSKSYEDNMAKLCEFATIEDFWRLWNNIPKPSAIFYDGRTKKKFKDRTVESFSLFKKGVKPEWEDAANRTGAEWFCRKTFPMPQLDSFWQDLVLGMVGETIDPADEICGARVVDKSSGTRCMYRLELWFRKKDETIAKELLERMNGQL 226
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1717.1 vs. uniprot
Match: A0A7S2CNW6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CNW6_9EUKA)

HSP 1 Score: 184 bits (467), Expect = 2.380e-52
Identity = 84/178 (47.19%), Postives = 114/178 (64.04%), Query Frame = 3 
Query:   75 ANGSAEQLHP-----LQNTWCIWEHKVA-KSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACL 590
            +NG    + P     L++ W IWEH+   K+S  + D+M+ L E AT+EDFW+ +NN+PKPS + +DG  RKK  +R ++S+S+FKK IKPEWE P N  G EW  R     Q LD FW ++VLG++GET+D  D+ICGARVVDKS     +YR ELW +  D   A  LL R+ + L
Sbjct:    4 SNGDVSPMPPGGPHFLESEWVIWEHRSPDKNSKSYEDNMEKLCEVATIEDFWRAFNNIPKPSAIFYDGRTRKKFANRSVESFSLFKKNIKPEWEDPMNRSGAEWFCRKTFASQQLDEFWRDLVLGMIGETIDPADDICGARVVDKSSGTRQMYRLELWFKRKDDAVAQELLNRMNSHL 181
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1717.1 vs. uniprot
Match: A0A1V9ZKJ8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKJ8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.130e-51
Identity = 81/179 (45.25%), Postives = 123/179 (68.72%), Query Frame = 3 
Query:   90 EQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACLADRNLHEKLMPS 626
            +++HPLQ+ W IWE + + +  ++GD++  L  F++VE+FW  +NN+PKPSQV+ DG  +KK  DR + S+++FK+GI+PEWE   N  GGEWQ   ++ P  LD  W+ +VLG++GET+D  +EI GARVV K+K + + YRFELWLRS D N A  + + + AC+      +K++ S
Sbjct:    3 DEVHPLQSAWSIWELRES-TKGNYGDNLHRLCTFSSVEEFWGYWNNIPKPSQVLNDGIAKKKFSDRSVQSFAVFKEGIRPEWEDSANMNGGEWQLSIRLQPGPLDELWDKVVLGMIGETIDPTNEITGARVVHKNKKDTHTYRFELWLRSRDRNLADEIRKNMVACMNQDGSSQKVVVS 180
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BLAST of mRNA_E-siliculosus-1a_F_contig128.1717.1 vs. uniprot
Match: A0A7R9WYN1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYN1_9STRA)

HSP 1 Score: 181 bits (460), Expect = 7.340e-51
Identity = 91/224 (40.62%), Postives = 133/224 (59.38%), Query Frame = 3 
Query:   12 RPLTENTRRNTADGRTKGAVMANGSAEQLHPLQNTWCIWEHK--VAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGD--RVIDSYSIFKKGIKPEWEAPENSQGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVG--------DEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERL-RACLADRNLHEKLMPSFDWKAH 644
            +P+ +NT    ++GR           E LHPLQN W +WEHK    K    W ++M+ L EF T+E+FW+ +NN+PKPS+V FDG  +KK+G+  R +  YS+FKKGI+PEW  P+N+ GGEW  R     + LDL+W N+V+GLVGET++          D + G RVVDKS+ +   YR E+W+ + D     R+ +RL    +  ++   + +P F WK H
Sbjct:   14 KPIPDNTTLWFSEGRM---------TESLHPLQNAWVLWEHKSSTTKDPTKWKENMKQLCEFTTMEEFWQNFNNLPKPSEVFFDGQCKKKIGEDGRTVAEYSLFKKGIEPEWSDPQNTIGGEWFCRQSFELEILDLYWINLVMGLVGETIEDAINSDSKGNDHLNGVRVVDKSRGSLPQYRLEVWINTRDAVVRDRVKQRLIDVAVNGQDSANRTVPRFSWKDH 228
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig128.1717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT3_ECTSI3.290e-13999.48Eukaryotic translation initiation factor 4E-like 1... [more]
A0A835ZBP0_9STRA2.430e-8163.19Eukaryotic translation initiation factor 4E-like 1... [more]
A0A7S2XVT5_9STRA1.250e-6150.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
R1BIV2_EMIHU7.450e-5550.61Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A2R5GD67_9STRA2.110e-5449.21Eukaryotic translation initiation factor 4E n=1 Ta... [more]
A0A7S3EX75_9EUKA2.830e-5348.88Hypothetical protein n=2 Tax=Haptolina ericina Tax... [more]
A0A7S0HHF8_9EUKA1.240e-5250.91Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S2CNW6_9EUKA2.380e-5247.19Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A1V9ZKJ8_9STRA2.130e-5145.25Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7R9WYN1_9STRA7.340e-5140.63Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig128contigE-siliculosus-1a_F_contig128:66756..71979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size585
Model size1411
Exons5
Ec32 orthologEc-28_002900.1
Ec32 ortholog descriptioneukaryotic translation initiation factor 4E- like 1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03012,ko03019,ko04516
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
CAZyGT28
COG Functional cat.J
EC2.4.1.46
EggNOG OGsCOG5053@1,KOG1670@2759
EggNOG free text desc.translation initiation factor activity
GOsGO:0000082,GO:0000278,GO:0000339,GO:0000340,GO:0000932,GO:0001662,GO:0002209,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0007049,GO:0007275,GO:0007346,GO:0007399,GO:0007610,GO:0008134,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009410,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010721,GO:0014070,GO:0016281,GO:0016442,GO:0017148,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0022008,GO:0022402,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031332,GO:0031369,GO:0031370,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033391,GO:0033555,GO:0033993,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0042596,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045787,GO:0045931,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051384,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065007,GO:0070491,GO:0070887,GO:0071310,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0080090,GO:0097159,GO:0097327,GO:0098727,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1903047,GO:1990904,GO:2000026,GO:2000112,GO:2000113
KEGG ModuleM00428
KEGG Pathwayko00561,ko01100,ko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04360,ko04910,map00561,map01100,map01521,map03013,map04066,map04150,map04151,map04211,map04360,map04910
KEGG ReactionR02691
KEGG koko:K03259,ko:K03715,ko:K07521
KEGG rclassRC00005,RC00059
Seed eggNOG ortholog2880.D8LTT3
Seed ortholog evalue1.2e-111
Seed ortholog score409.1
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927800.9474275-UTR-E-siliculosus-1a_F_contig128:66755..668261622927800.9474275-UTR-E-siliculosus-1a_F_contig128:66755..66826Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 66756..66826 +
1696318685.4812157-UTR-E-siliculosus-1a_F_contig128:66755..668261696318685.4812157-UTR-E-siliculosus-1a_F_contig128:66755..66826Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 66756..66826 +
1622927801.0340915-UTR-E-siliculosus-1a_F_contig128:71224..719791622927801.0340915-UTR-E-siliculosus-1a_F_contig128:71224..71979Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 71225..71979 +
1696318685.531285-UTR-E-siliculosus-1a_F_contig128:71224..719791696318685.531285-UTR-E-siliculosus-1a_F_contig128:71224..71979Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 71225..71979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927800.9621913-CDS-E-siliculosus-1a_F_contig128:66826..668921622927800.9621913-CDS-E-siliculosus-1a_F_contig128:66826..66892Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 66827..66892 +
1696318685.4923332-CDS-E-siliculosus-1a_F_contig128:66826..668921696318685.4923332-CDS-E-siliculosus-1a_F_contig128:66826..66892Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 66827..66892 +
1622927800.9763932-CDS-E-siliculosus-1a_F_contig128:67720..678281622927800.9763932-CDS-E-siliculosus-1a_F_contig128:67720..67828Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 67721..67828 +
1696318685.5000203-CDS-E-siliculosus-1a_F_contig128:67720..678281696318685.5000203-CDS-E-siliculosus-1a_F_contig128:67720..67828Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 67721..67828 +
1622927800.9927528-CDS-E-siliculosus-1a_F_contig128:68742..689101622927800.9927528-CDS-E-siliculosus-1a_F_contig128:68742..68910Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 68743..68910 +
1696318685.5075197-CDS-E-siliculosus-1a_F_contig128:68742..689101696318685.5075197-CDS-E-siliculosus-1a_F_contig128:68742..68910Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 68743..68910 +
1622927801.0071177-CDS-E-siliculosus-1a_F_contig128:69722..698711622927801.0071177-CDS-E-siliculosus-1a_F_contig128:69722..69871Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 69723..69871 +
1696318685.5151203-CDS-E-siliculosus-1a_F_contig128:69722..698711696318685.5151203-CDS-E-siliculosus-1a_F_contig128:69722..69871Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 69723..69871 +
1622927801.0220282-CDS-E-siliculosus-1a_F_contig128:71130..712241622927801.0220282-CDS-E-siliculosus-1a_F_contig128:71130..71224Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 71131..71224 +
1696318685.5232165-CDS-E-siliculosus-1a_F_contig128:71130..712241696318685.5232165-CDS-E-siliculosus-1a_F_contig128:71130..71224Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 71131..71224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig128.1717.1prot_E-siliculosus-1a_F_contig128.1717.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig128 66827..71224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig128.1717.1

>prot_E-siliculosus-1a_F_contig128.1717.1 ID=prot_E-siliculosus-1a_F_contig128.1717.1|Name=mRNA_E-siliculosus-1a_F_contig128.1717.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=195bp
MANGSAEQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVY
NNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSQGGEWQ
SRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRF
ELWLRSNDGNTAARLLERLRACLADRNLHEKLMPSFDWKAHGGR*
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mRNA from alignment at E-siliculosus-1a_F_contig128:66756..71979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig128.1717.1 ID=mRNA_E-siliculosus-1a_F_contig128.1717.1|Name=mRNA_E-siliculosus-1a_F_contig128.1717.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5224bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:66756..71979+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGACACCAGAGACCACTAACAGAGAACACACGCAGAAATACAGCAGAC
GGTAGAACCAAAGGCGCAGTCATGGCGAATGGGAGTGCAGAGCAGCTTCA
CCCGCTCCAGAACACGTGGTGTATTTGGGAACACAAGGTGTGGTTGGTCA
TATTTTGTAATTGTTGATTTGGCTCTGTACCTGTTGGGTGTGTGCGGTGT
GTGTCGGCTGCTCTCTTACACTACAGCAAGGTTGTTGATGAGGCGGGCGG
GGGTGGGTGGCAGAGAAACATGTCGCTTGTTGGTGTCAAAGTGCCACGCC
CTGCTCTGCGTTCATGGTTGGTCTGGACTTGACCCCTACTTCCTTTCAAC
GTGGGTATAGATTGTAGGTCTGTAGCCCGTACGCGGATTCGGTCCTATAA
CCGCACCCCCCTCCGGTCGATTTGCACATTTGTACAGCAGTAGTGAGGAT
CCCTGTTGGGTGCCGGTTGAGTATTGCCAATGCCCGCTATAGTACCGGTG
TTTTCGGCGGGCAAACACTGAATTTCCACGCCCATGTGAATACTTCGAAT
AGTGCCGGCCCGGTATAGTGCTGGTGAATATTCTGGGCAAATACCGGCAC
TATACAGGGACTCTCACTACTGTACCATGGTATACTGGTGCCGTATGAGA
CCACACAACTGGACCGATTTTCAAGGCCCGATTAATTCGCCACGAAGAGC
ATGCATAACGCAAACGATGCGTTTTCGGAAAGCTGCCGACGAGACGCGCC
GTTTTGGACGACACAACTCTTTCTGCCGTGGAAAAAGTTCGAGCTTCGAG
AATCGCTTACAGGGAGGGGGTGTGAAATGTTGTGTCACCTCTGTTACACA
TCTCTCAGCGCAAACGCAGCAGCAGCGTTGACCTCTCCAGCTTGTGAAAG
TGATGCCGGCCGCGAGATGTCACTTATTCTGATCTCACTTGTTCTGATAC
CCCCGCGTCCAATAGGTGGCAAAGTCCAGCGCGGACTGGGGAGACAGCAT
GCAGAGCCTTGCGGAGTTCGCGACCGTGGAAGATTTTTGGAAGGTGTACA
ACAACGTCCCCAAGCCCAGCCAGGTGAGCGCAGGCTTACTGTAGCTCGCC
AGCACACGCGGGCACCGCCGTGAGGCTCGTCAGCACGCAGGCACCGTCCG
TACGTGCCTCTCCGCAAGGCTGATGGGGGATCAGTGGTGTTTTAAAGTTC
CATGTGCACCTGGGCTGCCTAAATTAGATGCCCACACAAGCCCCCGAGCC
AGATTCAGAAAAGTCTGTAGCCTAGACAGCAGGCCAATTGGGCCAATGAG
ACTCGGGCATGCTCAAGGAGGCTGCACACAAGGGTGCACCCAAACTTCGA
TAAGCTCCAAATCGGGCCGGGTCTACCTATTGATGGGGGGGGGGGCACAC
AGATGTTGCCACTCTTTTGGAATACGGTGACGTTGATCCACATGGGACTC
CCTGTACTACTTCCTGTACGTTCCATTGTGGGTTGTTCCAAGTGGGGGAA
AAATACGAGCCAAGCACCGTTCAAAATGACATTTCCCTCGTGATAGCACG
TTGCTCAGCGACAGATACCGCTCCTCTGGGCGTTTATGGTGTCTTGCAGT
CACGATCTGGTAGCGGAGGCAGGCGATGTGACAAGCTAGAACCCGTTGCA
AATTTGTGGACGACATGACAGAAGAATGCGTCAGAAACTCAAAGTCGTGA
TCCTATCCAGAGGAAAGACGGCAACGCCAACTCGCCGTCTCGAAAGCGGT
TCGTAATCGATTGTCGGAGAAATTGCGGGGACAACAGGCTTGAACCCCCC
CCTCCATGGAACTCCCAGGATAGAAGAGGAAACATTTTTAAGCCACCTTT
GGCAAAGTAGGAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGAAC
AATGCTCCGTCCTCTCGAGGACGCGCGGTCAATGGCCTTACCGCCAAGGC
ATGCAAAACATGAGTACGCCCCCCTCCCACGCGGCAGGTAATGTTTGACG
GGTCGATGCGGAAGAAGGTCGGAGACCGAGTGATCGACTCGTACAGCATC
TTCAAGAAGGGCATCAAGCCCGAGTGGGAGGCTCCGGAGAACAGCCAGGG
GGGGGAGTGGCAGAGCCGGAGCAAGATGACCCCGCAGGCGCTCGACCTGT
TCTGGGTGAGGGCTCCGCTACGGTCGATGGGGAACGAGTGTGTCCTTCAA
ACCGGTTGTACCCATCTTTCTACCGTTGTTGTTTATTTTTTGTTGTTTCT
ATCGGTTGTGTTTGTGCATACTGTAGTGAATATATGAATACTGGTTACCC
TCTGGTAGCTTGCGGATTCGAGGTGAAGTTTTGCCGACAAATACAGACCA
GGTTAGTTATTTCTCGCCCATGAGATGCGTTTGGTCGGTTGGCAGGTTTT
TCGTGGGCAAACTAATGTTGTTGCTTGGCCCCTCTGTTCTCAACGAACCT
ACGCCCTGGGGTGAATGCATATTGTTTCTTATTCCCCCCCTCCTCCTGGT
ATTCGGTATTCGTCCATGAAGTATCGTCGCGAGCCTGGCCGTCATTTCCA
GAGGCCAAGTTTTGGGAAGCAATCAAGTCGAATTTGTTGTGTTGAATGCC
GGTGCTTGGTTCTTGCCGGAGCTGAATGAGTGTGCTCTCTTGAAACATGC
CTTTTTGTATGGTGAGAGTTGTTTGTATTGTGGCAGGAGACAGAAATCTG
GCCGGAATTTGTTTCATGAACCTGGGAACTGTGTCGTAGCTCATTGGAAT
ATTTGTTCGTGTGTACATTACTCCATCTGCCGTTTAGATCGTTGTTGATC
ATATGCCTTTGACGTTTGTTTTCGTTGCTGGGGAAGATAGCACAGCGCTT
TCGTCAATGCATGCCGTGTGTGGCATCTTGATTGTCCCGCCATTCGCTCA
TAGACGCGTAACTCCTTTTGCCCCTCTCTGTGCATGATATCGTCCCATTC
GTTATGTGTACATGCAGGAGAACATGGTGTTGGGGCTGGTCGGGGAAACG
GTCGACGTCGGGGACGAGATCTGCGGGGCAAGGGTGGTGGACAAGAGCAA
GAACAACCACAACGTGTACCGTTTCGAGCTGTGGCTGAGGAGTAACGACG
GCAACACCGCGGCCAGGTGAGCCATCGAGGCATCCGGTGACCCCACGTTT
GAGTCACTCGACAACGAGCACAAACTGCCGAGCGGAGCAGATTATATGAA
CGAGCGAGTGGTTAGAGCACTCGCGTATGATGATAGTAGCAGGGGTCCCT
GTGATTGCCCAGCTCGAGCCGATGTACGGCGGCCCAGGAGGAGATGAACT
ACCAGCGGCGATGTCACGCGACGAATGTGATGCGGGAGAACTCGGTGGTT
TCGATCTTGACTACCCCGTCATTTCGGGTGGCGCGCTCGCTGTTCTTCAT
CACCAACACCAGTACCTGCGTGTGCTCTACAATTGCCCACTTGTCGACCA
AGCGAATATCGCAAGGCTACTGTCGAAACCTGACTAGATGTACTCCTCAC
AACATGGTTGGAATGGCAGATAGTTCCTCGCTGTTGGTGGTCTCACGGCA
AAACCTTGATCGTGCCAGGCATACGTGTTTGTTGTCGGAATCGTTTTTTG
AACAAGACGTGTTCGAGGGAGAGATTGCTAGGAAATCGCCTACAGTACCC
GCAGCGTGCTAGAACTCGAACCTTTCGCGGCGTGCATGTGATTGCGAGTC
CGGTTTCCCCTGCGTTGAGCAGCGCTGTCTACCGACGAAAAATCATTTGA
ATGAATTGCAACCAGCCGGGGAAGTAAGTGTCCTCATGGTTGATACCCCC
TCCTCATGTTGTATGTACATCTAAAGCGCTATGCGAGGCAAGAGGCAGCA
GTTTATCTGTGGTACGGCATGCCTGTGAAAACAATGTTGTCCTTTACCGG
GTGAGTGTCCGTAACAATGGTTCCCTTGACCGAGGTGTGACTGTATCTTG
AAACCTCTTCTCCTAGACTGCGTGCGCGGGGCTGTGCTCTTGTATTGAGC
ATTGGCGCTGAAGGTGGGGAGGGCTGCACTGAAGTTTCGGTCGGTTTCCG
TGACGAGTAGGAGCACAGGTTGATCATCATACAACGCTACGATTACTTCA
TTGCCAATCTATCCCACTCATAGCCGCGTAGGAGATTAATTCTTTGTGTT
TTTATAAGAAACAAGATGACAAATCAATGCCGGAACGCTATGATTACTTC
ATTGCCAATCTATCCCGCTCATAGCAGCGTAGGAGATTAATTCCTTGTGT
TTTGATAAGAAACAAGATGACAAATCAATGCCAGCGACGCCTCCTTTTTC
ATACGCACTCACCTTTTTCCAATGTCACCCCCCACCGCCGTCCCATGCCG
TTGGACAACCCATGTGCGTGTGCAGGCTACTGGAACGCCTACGGGCATGC
CTGGCGGACAGGAACTTGCACGAGAAGTTGATGCCTAGCTTTGACTGGAA
GGCACACGGGGGGCGGTGATCATCGCAGGCGGAAAATTGGAGATTTGACG
GGGATGGAATTAGCGGGGCCGGGCAGCGTTTTTGGTGTAGGGGTCCTGAA
AATGTTGTGTGGCGTGGTGAAGGGATGTTGTAGTAGGTCCCTGCGGCATA
AACAAGTTATTACTGGACCCGAGCTCGACGGGAAGAGTGGCGTCACCCCC
CTAGCCTAGCAATGATCTACGGCACCCCCGTGAGGAGGATGGTGAAGCTT
CTCTTGTCGCCAAAGTCTTGCTGTGTAGCATGTTTGGAGCGCTTTCAAGG
AAGTCCTCACAAGTTTCACCCTAGCCTGGCGGTGGGGCCAGTTCCACACG
TCCTGCGTACTGTAGTAGGGAGGGGCGGCCGTTTGTGTAGCCTATTGGAG
TACAGATAGTAGTCTACAACCGTACGTAGGTTGTCCTGAGGTTTTTTGTT
TTTCATCTCACGGGGGGAACTGTAGTTCTTACAATTTTGACTAAAACTTT
TTCTGAGAAAGGTACCAGCGAGGTCCTCTGCCTGGTTGCGTGATCCTCAC
TCATGGGTTTGAACTCGAGCAGATGCGCGCGCGAGTCGTTGTGTCTGTGG
CAGCCGCGGCCCACTGTGGAGAGACTGACTGCAAACAATTTCCCGTACAC
GTATGCTGCTTTGACCCATGGCCCGAAAGACTGGAGAGCTGTGTTTCTTT
CTCACTGGGGATGGGAGGCATCCCAAGGTTGGGGTAAGGTCATGCGCTTC
AAAAATGAACAACGACCCTCGCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig128:66756..71979+

>mRNA_E-siliculosus-1a_F_contig128.1717.1 ID=mRNA_E-siliculosus-1a_F_contig128.1717.1|Name=mRNA_E-siliculosus-1a_F_contig128.1717.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1170bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:66756..71979+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGAATGGGAGTGCAGAGCAGCTTCACCCGCTCCAGAACACGTGGTG
TATTTGGGAACACAAGATGGCGAATGGGAGTGCAGAGCAGCTTCACCCGC
TCCAGAACACGTGGTGTATTTGGGAACACAAGGTGGCAAAGTCCAGCGCG
GACTGGGGAGACAGCATGCAGAGCCTTGCGGAGTTCGCGACCGTGGAAGA
TTTTTGGAAGGTGTACAACAACGTCCCCAAGCCCAGCCAGGTGGCAAAGT
CCAGCGCGGACTGGGGAGACAGCATGCAGAGCCTTGCGGAGTTCGCGACC
GTGGAAGATTTTTGGAAGGTGTACAACAACGTCCCCAAGCCCAGCCAGGT
AATGTTTGACGGGTCGATGCGGAAGAAGGTCGGAGACCGAGTGATCGACT
CGTACAGCATCTTCAAGAAGGGCATCAAGCCCGAGTGGGAGGCTCCGGAG
AACAGCCAGGGGGGGGAGTGGCAGAGCCGGAGCAAGATGACCCCGCAGGC
GCTCGACCTGTTCTGGGTAATGTTTGACGGGTCGATGCGGAAGAAGGTCG
GAGACCGAGTGATCGACTCGTACAGCATCTTCAAGAAGGGCATCAAGCCC
GAGTGGGAGGCTCCGGAGAACAGCCAGGGGGGGGAGTGGCAGAGCCGGAG
CAAGATGACCCCGCAGGCGCTCGACCTGTTCTGGGAGAACATGGTGTTGG
GGCTGGTCGGGGAAACGGTCGACGTCGGGGACGAGATCTGCGGGGCAAGG
GTGGTGGACAAGAGCAAGAACAACCACAACGTGTACCGTTTCGAGCTGTG
GCTGAGGAGTAACGACGGCAACACCGCGGCCAGGAGAACATGGTGTTGGG
GCTGGTCGGGGAAACGGTCGACGTCGGGGACGAGATCTGCGGGGCAAGGG
TGGTGGACAAGAGCAAGAACAACCACAACGTGTACCGTTTCGAGCTGTGG
CTGAGGAGTAACGACGGCAACACCGCGGCCAGGCTACTGGAACGCCTACG
GGCATGCCTGGCGGACAGGAACTTGCACGAGAAGTTGATGCCTAGCTTTG
ACTGGAAGGCACACGGGGGGCGGTGAGCTACTGGAACGCCTACGGGCATG
CCTGGCGGACAGGAACTTGCACGAGAAGTTGATGCCTAGCTTTGACTGGA
AGGCACACGGGGGGCGGTGA
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