mRNA_E-siliculosus-1a_F_contig128.1715.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig128.1715.1
Unique NamemRNA_E-siliculosus-1a_F_contig128.1715.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig128.1715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig128contigE-siliculosus-1a_F_contig128:56984..57568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size315
Model size585
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig128.1715.1prot_E-siliculosus-1a_F_contig128.1715.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig128 57161..57475 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.4598818-UTR-E-siliculosus-1a_F_contig128:56983..571601622927799.4598818-UTR-E-siliculosus-1a_F_contig128:56983..57160Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 56984..57160 +
1696318684.7305584-UTR-E-siliculosus-1a_F_contig128:56983..571601696318684.7305584-UTR-E-siliculosus-1a_F_contig128:56983..57160Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 56984..57160 +
1622927799.492402-UTR-E-siliculosus-1a_F_contig128:57475..575681622927799.492402-UTR-E-siliculosus-1a_F_contig128:57475..57568Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 57476..57568 +
1696318684.750267-UTR-E-siliculosus-1a_F_contig128:57475..575681696318684.750267-UTR-E-siliculosus-1a_F_contig128:57475..57568Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 57476..57568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.4762292-CDS-E-siliculosus-1a_F_contig128:57160..574751622927799.4762292-CDS-E-siliculosus-1a_F_contig128:57160..57475Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 57161..57475 +
1696318684.7402978-CDS-E-siliculosus-1a_F_contig128:57160..574751696318684.7402978-CDS-E-siliculosus-1a_F_contig128:57160..57475Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 57161..57475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig128.1715.1

>prot_E-siliculosus-1a_F_contig128.1715.1 ID=prot_E-siliculosus-1a_F_contig128.1715.1|Name=mRNA_E-siliculosus-1a_F_contig128.1715.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=105bp
MPFSLGPKSPREQNTGIRTRLRQHPVPFEKNFDIPFRRSNAKVNKNAQKK
QWQPCFAMHSLFHPLPADMCLRPTIDRRCVLAVEPGIREQDESIERNMLC
TTIR*
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mRNA from alignment at E-siliculosus-1a_F_contig128:56984..57568+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig128.1715.1 ID=mRNA_E-siliculosus-1a_F_contig128.1715.1|Name=mRNA_E-siliculosus-1a_F_contig128.1715.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=585bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:56984..57568+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGGCGAGCAATAAAACCCTGCGCGATCCCGGCTGATACGGCAAATAAAT
ATTGAAAGATGTAGACTGGCTGGAGAATATATGGGACGAAACACAACACA
CCGTAACACAACACAACACAACAACACACCTGATAACCCAACACGCAAAG
GGTGGCGGTTAGCAACACGAAACGGCAATGCCCTTCTCCCTCGGTCCGAA
ATCCCCCCGGGAACAAAACACCGGCATACGTACTAGACTACGTCAACATC
CTGTCCCTTTCGAAAAAAACTTCGACATCCCCTTCCGCCGGAGTAATGCT
AAAGTTAACAAAAATGCACAAAAAAAACAGTGGCAGCCTTGTTTCGCAAT
GCACAGCTTGTTCCACCCGTTGCCGGCCGACATGTGCCTTCGACCTACGA
TCGATCGGCGGTGTGTGCTTGCCGTTGAGCCAGGCATCAGAGAACAGGAC
GAGAGCATTGAACGAAACATGCTATGTACTACCATCCGTTAGGAGCGAGT
AGCCCAAGAAAAGGTTTCCTCCCATCAGACGACCAGCGCTACGGCTTCCA
GGCGCGGATGCTGCTGCAGGTGCTGCTGTTTACCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig128:56984..57568+

>mRNA_E-siliculosus-1a_F_contig128.1715.1 ID=mRNA_E-siliculosus-1a_F_contig128.1715.1|Name=mRNA_E-siliculosus-1a_F_contig128.1715.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:56984..57568+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCTTCTCCCTCGGTCCGAAATCCCCCCGGGAACAAAACACCGGCAT
ACGTACTAGACTACGTCAACATCCTGTCCCTTTCGAAAAAAACTTCGACA
TCCCCTTCCGCCGGAGTAATGCTAAAGTTAACAAAAATGCACAAAAAAAA
CAGTGGCAGCCTTGTTTCGCAATGCACAGCTTGTTCCACCCGTTGCCGGC
CGACATGTGCCTTCGACCTACGATCGATCGGCGGTGTGTGCTTGCCGTTG
AGCCAGGCATCAGAGAACAGGACGAGAGCATTGAACGAAACATGCTATGT
ACTACCATCCGTTAGATGCCCTTCTCCCTCGGTCCGAAATCCCCCCGGGA
ACAAAACACCGGCATACGTACTAGACTACGTCAACATCCTGTCCCTTTCG
AAAAAAACTTCGACATCCCCTTCCGCCGGAGTAATGCTAAAGTTAACAAA
AATGCACAAAAAAAACAGTGGCAGCCTTGTTTCGCAATGCACAGCTTGTT
CCACCCGTTGCCGGCCGACATGTGCCTTCGACCTACGATCGATCGGCGGT
GTGTGCTTGCCGTTGAGCCAGGCATCAGAGAACAGGACGAGAGCATTGAA
CGAAACATGCTATGTACTACCATCCGTTAG
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