mRNA_E-siliculosus-1a_F_contig128.1712.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig128.1712.1
Unique NamemRNA_E-siliculosus-1a_F_contig128.1712.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig128.1712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig128contigE-siliculosus-1a_F_contig128:39509..40090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size309
Model size582
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.3978755-UTR-E-siliculosus-1a_F_contig128:39508..397811622927799.3978755-UTR-E-siliculosus-1a_F_contig128:39508..39781Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 39509..39781 +
1696318684.7103815-UTR-E-siliculosus-1a_F_contig128:39508..397811696318684.7103815-UTR-E-siliculosus-1a_F_contig128:39508..39781Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 39509..39781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.4102736-CDS-E-siliculosus-1a_F_contig128:39781..400901622927799.4102736-CDS-E-siliculosus-1a_F_contig128:39781..40090Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 39782..40090 +
1696318684.7202253-CDS-E-siliculosus-1a_F_contig128:39781..400901696318684.7202253-CDS-E-siliculosus-1a_F_contig128:39781..40090Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 39782..40090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig128.1712.1prot_E-siliculosus-1a_F_contig128.1712.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig128 39782..40090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig128.1712.1

>prot_E-siliculosus-1a_F_contig128.1712.1 ID=prot_E-siliculosus-1a_F_contig128.1712.1|Name=mRNA_E-siliculosus-1a_F_contig128.1712.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=103bp
MFGTCGEMILRIVHLDDRIIPVDEGLDVCDVAICHMWPYMLPSCCLFFFA
AAAFCAKQCWGFKRSNWCMLYIVRRAKPVLACTKVICKAPSKEKSHILLG
ITN
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mRNA from alignment at E-siliculosus-1a_F_contig128:39509..40090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig128.1712.1 ID=mRNA_E-siliculosus-1a_F_contig128.1712.1|Name=mRNA_E-siliculosus-1a_F_contig128.1712.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=582bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:39509..40090+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCTCAAGGCTGATACAGGTTTGTTAGAGGTTTGTTTTCTTCCGGGCGTTG
CTGAGGTTCTTCTTGATTCGTGCTCGTCTCCTTCTCCACGATCGCAAGTG
GTGCCGTGGGTTGACGGGGTGTCTTGGTTTGGGGGGTGCTGTCGCGCGGT
CGGGCGTGGGGGGGAAGCAGCAGTGATGAGACCAGCCGTCGATGCGCTTG
ATTGAGTCTGATCTTGAGGTTGGCCGATCCAGGCTGTTTTCTGTGGGGCC
GTGGATGCAATCGGCCAAGGCTGATGTTTGGGACATGTGGGGAAATGATT
CTGAGAATTGTACATTTAGATGATAGGATTATTCCTGTGGACGAAGGACT
CGACGTGTGTGATGTTGCGATATGTCATATGTGGCCCTACATGCTGCCTT
CATGCTGCTTGTTTTTTTTTGCTGCGGCGGCCTTTTGTGCGAAACAGTGT
TGGGGCTTTAAGCGTTCAAACTGGTGCATGTTATACATAGTGCGGAGGGC
AAAGCCAGTACTTGCTTGTACAAAGGTCATTTGCAAAGCTCCAAGCAAAG
AGAAGAGCCACATCCTACTTGGCATAACAAAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig128:39509..40090+

>mRNA_E-siliculosus-1a_F_contig128.1712.1 ID=mRNA_E-siliculosus-1a_F_contig128.1712.1|Name=mRNA_E-siliculosus-1a_F_contig128.1712.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=618bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:39509..40090+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTTTGGGACATGTGGGGAAATGATTCTGAGAATTGTACATTTAGATGA
TAGGATTATTCCTGTGGACGAAGGACTCGACGTGTGTGATGTTGCGATAT
GTCATATGTGGCCCTACATGCTGCCTTCATGCTGCTTGTTTTTTTTTGCT
GCGGCGGCCTTTTGTGCGAAACAGTGTTGGGGCTTTAAGCGTTCAAACTG
GTGCATGTTATACATAGTGCGGAGGGCAAAGCCAGTACTTGCTTGTACAA
AGGTCATTTGCAAAGCTCCAAGCAAAGAGAAGAGCCACATCCTACTTGGC
ATAACAAACATGTTTGGGACATGTGGGGAAATGATTCTGAGAATTGTACA
TTTAGATGATAGGATTATTCCTGTGGACGAAGGACTCGACGTGTGTGATG
TTGCGATATGTCATATGTGGCCCTACATGCTGCCTTCATGCTGCTTGTTT
TTTTTTGCTGCGGCGGCCTTTTGTGCGAAACAGTGTTGGGGCTTTAAGCG
TTCAAACTGGTGCATGTTATACATAGTGCGGAGGGCAAAGCCAGTACTTG
CTTGTACAAAGGTCATTTGCAAAGCTCCAAGCAAAGAGAAGAGCCACATC
CTACTTGGCATAACAAAC
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