mRNA_E-siliculosus-1a_F_contig128.1710.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig128.1710.1
Unique NamemRNA_E-siliculosus-1a_F_contig128.1710.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig128.1710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig128contigE-siliculosus-1a_F_contig128:29446..30828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size186
Model size238
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig128.1710.1prot_E-siliculosus-1a_F_contig128.1710.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig128 29446..30777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.335932-CDS-E-siliculosus-1a_F_contig128:29445..296211622927799.335932-CDS-E-siliculosus-1a_F_contig128:29445..29621Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 29446..29621 -
1696318684.6708314-CDS-E-siliculosus-1a_F_contig128:29445..296211696318684.6708314-CDS-E-siliculosus-1a_F_contig128:29445..29621Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 29446..29621 -
1622927799.3505747-CDS-E-siliculosus-1a_F_contig128:30767..307771622927799.3505747-CDS-E-siliculosus-1a_F_contig128:30767..30777Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 30768..30777 -
1696318684.6859653-CDS-E-siliculosus-1a_F_contig128:30767..307771696318684.6859653-CDS-E-siliculosus-1a_F_contig128:30767..30777Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 30768..30777 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.3622744-UTR-E-siliculosus-1a_F_contig128:30777..308281622927799.3622744-UTR-E-siliculosus-1a_F_contig128:30777..30828Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 30778..30828 -
1696318684.699904-UTR-E-siliculosus-1a_F_contig128:30777..308281696318684.699904-UTR-E-siliculosus-1a_F_contig128:30777..30828Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 30778..30828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig128.1710.1

>prot_E-siliculosus-1a_F_contig128.1710.1 ID=prot_E-siliculosus-1a_F_contig128.1710.1|Name=mRNA_E-siliculosus-1a_F_contig128.1710.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=62bp
MRSDNFGWGRGRDDDGYGSGGESRRRIIDGGGSGGFRGSRGSGGGGGRRV
ISSKPLVRKIGG
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mRNA from alignment at E-siliculosus-1a_F_contig128:29446..30828-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig128.1710.1 ID=mRNA_E-siliculosus-1a_F_contig128.1710.1|Name=mRNA_E-siliculosus-1a_F_contig128.1710.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1383bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:29446..30828- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTATAACACCTTGGAGAGCCTATACTATCGAGTGCAAACACACCAGCCAC
CATGCGATCAGGTGAGGCAGCTTGCTCGGCACCATTTGGCTGCGTTTGTT
GTTGATTTCATAACTGAAAAAGAGACACCGCTACAAGTACTGAGCTCAGC
CGATGGATTGGCGGGCTTATCGTGAGCCCCAAGTCTAAGGCTTTTCTTGA
GCCCCCCAAGTCTAGGGGCTGATGTAGGATGATCTTTGTCGATCGCGTAG
CAGGACTCGCCCTCAGAGCTTGTGGTTTGTCCCTCGCAACTTCTTCAGCA
GATTCCCGCGTCTCTCCCTCCCACACCTCTCCGTACAACGAAGGCAGACC
CACACCCAACCGCCGCCGCTACATATGATAAGGCTTTGTGCGCGACCCGG
GCCGTTAGTGAGTGTCTACGGGAGAAGCTGAACTTGCCACACAGCAGGAT
CTCTGCCGTGTTGTGCTCATAAGGGCGTCGGCGGTGTCATAGTGCGTGCC
TCCGCTCTCCGCTGTCGGATCTGCACCCCCTGTTGATCTCGTGAGTTGGT
ACAGGTAAGTTTATGGGCACAATTGTCTCCCTTGGGGGGCGCGTTTACCG
TTTTCATCTGCTGCTGCTGGTCGTATTTTGATCACTCCGGGTCAGCAGCC
CAACCTGACTTTTAACTCTCATGAATATGCGCACTCCTTAACTTTTCTGC
GACTTGTGGGTTTAAAACACGCGAGCAAATGACGCCCTACAGCAGATCTC
GGGTTATCTGCAACACCCTAACTTATTTACCTCCTTTTTTCTGGATTGTT
GCGGTGCAAATGTTGGAATCGAGACTGCCGTCCGGGCGTTTGTCGGAATC
CAGACGTTCAAGAACCACGGGCGAGAATTCCCGCTCCGTTCACACTAGAA
TGCTTTGTCAAGGAAAGGTCAAAATGTTACAAGGTCGGAGTATGGACTAG
GATCCAGTCAACTACAGACACTCGGGACGGTGTGCTGAAGAATGTAACAA
AAACGACGGAAGTGTGGGACAGCTAGCCGTTGCGGGCACAAACATCGAAA
CCTCGTTTGTAAGTTCTCCGTTCTCAGCAGGTGGAATGCTATATATATGG
TCTTACCGTCTACACTACTGAGTTGCGTGTGAGAAACGATTTGGTTGGGC
AAGCAACAAACGGATCCCCCCCCCCTCCATCATGATTTCCCCCGTTCCGC
GAACAAGATAATTTTGGCTGGGGAAGAGGGCGTGATGACGACGGTTACGG
CAGCGGTGGCGAAAGCCGTAGGCGCATCATCGACGGCGGCGGCAGCGGCG
GGTTCAGGGGTAGCCGCGGAAGCGGCGGGGGCGGCGGCAGGAGGGTAATA
TCTTCGAAGCCCCTTGTTCGCAAGATTGGAGGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig128:29446..30828-

>mRNA_E-siliculosus-1a_F_contig128.1710.1 ID=mRNA_E-siliculosus-1a_F_contig128.1710.1|Name=mRNA_E-siliculosus-1a_F_contig128.1710.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=372bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:29446..30828- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGATCAGATGCGATCAGATAATTTTGGCTGGGGAAGAGGGCGTGATG
ACGACGGTTACGGCAGCGGTGGCGAAAGCCGTAGGCGCATCATCGACGGC
GGCGGCAGCGGCGGGTTCAGGGGTAGCCGCGGAAGCGGCGGGGGCGGCGG
CAGGAGGGTAATATCTTCGAAGCCCCTTGTTCGCAAGATTGGAGGAATAA
TTTTGGCTGGGGAAGAGGGCGTGATGACGACGGTTACGGCAGCGGTGGCG
AAAGCCGTAGGCGCATCATCGACGGCGGCGGCAGCGGCGGGTTCAGGGGT
AGCCGCGGAAGCGGCGGGGGCGGCGGCAGGAGGGTAATATCTTCGAAGCC
CCTTGTTCGCAAGATTGGAGGA
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