mRNA_E-siliculosus-1a_F_contig128.1708.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig128.1708.1
Unique NamemRNA_E-siliculosus-1a_F_contig128.1708.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: D8LTS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS7_ECTSI)

HSP 1 Score: 546 bits (1407), Expect = 2.560e-192
Identity = 294/306 (96.08%), Postives = 296/306 (96.73%), Query Frame = 2
Query:   53 MAPVGARCLGCALFAAALSGVSAFVVPTASQLQGIRALGRRHHDGRSHQPTQQQQQRT-GRGSAAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
            MAPVGARCLGCALFAAALSG+SAF+ PTASQLQGI ALGRRHHDGRSHQPTQ       GRGSAAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGI GETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA
Sbjct:    1 MAPVGARCLGCALFAAALSGISAFIAPTASQLQGITALGRRHHDGRSHQPTQXXXXXXXGRGSAAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGITGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 306          
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A836C9R2_9STRA (Transcriptional regulator TACO1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R2_9STRA)

HSP 1 Score: 293 bits (751), Expect = 3.320e-93
Identity = 158/240 (65.83%), Postives = 187/240 (77.92%), Query Frame = 2
Query:  248 VVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
            VVMMGRRA KIA+ K + D KR K FARIGKKIIMAVKAGGP+ED NK L+D IKEAK  +VPKDNI RAIKRA +G+QGD+KE  YEAYGHGG G+++TALTDNVNRA AD++ +  K+GLK A+ GSV FQF +RG++EV   +DEEQVIEAAI A VDDVEVVEG+ EGTSW+LT P  L  L   L+  GI GE  LA IP+ + +V D  MELNLAA+EAL  L+DVD V+HNMA
Sbjct:   52 VVMMGRRAEKIARTKEKGDLKRTKIFARIGKKIIMAVKAGGPSEDANKLLSDLIKEAKLYNVPKDNIQRAIKRATEGTQGDYKENSYEAYGHGGIGLIITALTDNVNRANADIRTLGTKKGLKMASSGSVAFQFTRRGKIEVNAVLDEEQVIEAAIAADVDDVEVVEGEEEGTSWVLTDPSMLSMLVDGLAAVGITGEPSLAHIPNEVVEVSDVDMELNLAAIEALEGLDDVDQVEHNMA 291          
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A6S9GJB7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GJB7_HETAK)

HSP 1 Score: 241 bits (614), Expect = 1.130e-72
Identity = 130/239 (54.39%), Postives = 168/239 (70.29%), Query Frame = 2
Query:  248 VVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNM 964
            +VMMGRR+ KIA+ KG EDAKRGK FARIGKKII+AVKAGGP  ++NK LAD +KEAK  +VPK+NI RAIKRA      DFKE +YEAYG GG G++++ LTDN NRA+ D+K   KK  +  A+ GSV F F+K+G +EV  E+DE+ V+E A+E GVDD  + EG+ EGTS +   P +   +  AL  AG A +  LA +P+   D D+   E NLA +EAL EL+DVD V+HN+
Sbjct:   48 LVMMGRRSEKIARKKGSEDAKRGKIFARIGKKIIVAVKAGGPVVESNKALADILKEAKSYNVPKENIDRAIKRAEAADAADFKEAVYEAYGAGGVGIIISCLTDNTNRALTDIKNAIKKSEVTLASSGSVAFNFDKKGCLEVASELDEDTVLEIALEGGVDDFVLEEGEEEGTSVVYVAPGETKLMADALEAAGHAPKPSLANVPNVWVDCDEATAEANLAVIEALEELDDVDCVEHNI 286          
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A7S1TSS5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSS5_9STRA)

HSP 1 Score: 231 bits (588), Expect = 1.600e-68
Identity = 146/297 (49.16%), Postives = 190/297 (63.97%), Query Frame = 2
Query:   89 LFAAALSGVSAFVVPTASQLQGIRALGRRHHDGRSHQPTQQQQQRTGRGSAAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEG---DHEGTSWILTTPKDLMTLTGALSEA-GIAGET-GLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNM 964
            LFAA L G++A  VP    L+ ++A               +QQ RT    A  VVMMGRRAAKIA  KG++DA + KA+ARIGK II+AVKAGGP+ ++N+QL+  + EAK   VPKDNI RAI RA      DFKE ++EAYG GG G+++  L+DN NRA   VK   KK GL  AA GSV F F++RGR+EV+G +DEE+V+E AIEA VDD E+      D E  + I T P+ +  L  AL E  G+ G T  L  +P  L D +DE  ++N+AA++ LLE +DVD+VDHNM
Sbjct:   28 LFAAVL-GMAAGFVPGGRGLRAVQAS--------------RQQPRT----ANTVVMMGRRAAKIAARKGKQDALKAKAYARIGKMIIIAVKAGGPDPESNRQLSQVLLEAKGVGVPKDNIKRAIDRASSADAADFKESVFEAYGKGGVGLLINVLSDNANRAATQVKTAIKKGGLTAAASGSVAFNFDRRGRLEVKGLLDEEEVLEVAIEADVDDYEMSTAKNDDDEDITVIFTAPESMSALGSALGEMDGVEGVTPSLVNVPKSLMDCEDEDYDINVAAIDLLLESDDVDSVDHNM 305          
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A7S4LII5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LII5_9EUGL)

HSP 1 Score: 216 bits (550), Expect = 1.400e-61
Identity = 123/239 (51.46%), Postives = 161/239 (67.36%), Query Frame = 2
Query:  254 MMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGI-AGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
            + GRR+AKIA  KGR DAK+ K +AR GKKIIMAVKAGGP+E  N  L D IKEAK  +VP  NI RAIKR  +    DFKE ++EAYG GG G+++T L+DN NRA ++VK+   K GL  A+ GSV F FE+ G +  + EVDE+ V+EAA+EA VDD EVV+GD +G   +LT PK    L  AL   G+  GE+ L   P+   ++ +E  E+N AA+E +  L+DVD++ HNMA
Sbjct:  185 LYGRRSAKIAATKGRADAKKAKLYARYGKKIIMAVKAGGPDEGANTTLRDVIKEAKDANVPIANIDRAIKRGSENDAADFKESLFEAYGKGGAGLMITVLSDNANRASSEVKSAINKSGLTVASPGSVAFNFERMGAIVCEEEVDEDLVLEAAMEADVDDAEVVQGD-DGEWLVLTDPKQTTQLKAALMAQGVKCGESALIYHPNNYVELSEEDAEINDAAIERIEALDDVDSIAHNMA 422          
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A7S2EDJ1_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EDJ1_TRICV)

HSP 1 Score: 209 bits (533), Expect = 1.630e-60
Identity = 121/246 (49.19%), Postives = 160/246 (65.04%), Query Frame = 2
Query:  239 AAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNE-DTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAG--ETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
            A+  + MGR AA  A  K + DAK+ K  A  GKKIIMAVK GG  + + N+QLA+ IK AK NSVP DNI RAIKRA +    +F E  +EAYG GG  M++  L+DN NRA ADVKA   K+G K A QGSVLF +++RG+VEV   +DEE+++ AAI+AG DD+E+ EGD EGTS + T P+D   L  A+   G     +  LA +     +  DE  E N+  ++AL EL+DVD+V+HNM+
Sbjct:   56 ASSPLFMGRAAAVRAATKSKTDAKKAKTNALFGKKIIMAVKNGGSTDPNANRQLAEVIKAAKANSVPVDNINRAIKRASETDASNFSESTFEAYGMGGASMIINVLSDNANRATADVKACVNKRGAKIAEQGSVLFMYDRRGKVEVPAVLDEEEILMAAIDAGCDDMELAEGDEEGTSVVYTEPQDASKLLDAVKSLGFEEGVKMSLAWVSKAPVECSDEDFEKNMEVIDALEELDDVDSVEHNMS 301          
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: B8C5V4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5V4_THAPS)

HSP 1 Score: 206 bits (525), Expect = 3.920e-60
Identity = 118/240 (49.17%), Postives = 158/240 (65.83%), Query Frame = 2
Query:  257 MGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNED-TNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGI--AGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
            MGR AA  A  KG+ DAK+ K  A  GKKIIMAVK GG  +   N+QL + IK AK NSVP DNI RAIKRA +   GDF E  +EAYG GG  +++  L+DN NR+ ADVK    K   K A QGSVLF ++ +G++E+   VDEE+++ AAI+AGV+D+E+VEGD EGTS + T PK+   +  A+   G+    + GLA I     +  +E  + N+A +EAL EL+DVD+V+HNM+
Sbjct:    1 MGRAAAVRAATKGKTDAKKAKVNAYYGKKIIMAVKQGGSADPIANRQLGELIKAAKQNSVPVDNINRAIKRATEKDAGDFSEATFEAYGFGGASLIINVLSDNSNRSTADVKTAVNKLKGKMAEQGSVLFMYDLKGKIEIPAVVDEEELLMAAIDAGVEDMELVEGDEEGTSIVYTDPKETSAMFDAVKAIGLEEGSKMGLAHISKAPVECTEEDFDKNMAIIEALEELDDVDSVEHNMS 240          
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A7S0ATJ5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ATJ5_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.310e-59
Identity = 118/247 (47.77%), Postives = 159/247 (64.37%), Query Frame = 2
Query:  236 SAAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNE-DTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAGET--GLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
            S +   + GR AA  A  KG+ DAK+ K  A  GKKIIMAVK GG  + + N+ LA+ IK AK NSVP DNI RAIKRA +    +F E  +EAYG GG  MV+  L+DN NR  ADVK+   K+G K A QGSVLF ++++G+VE+   VDEE+++ AAI+AG DD+E+VEGD EGTS + T PK+  ++  A+   G       GL  +     +  DE  E N+  ++AL EL+DVD+V+HNM+
Sbjct:   41 STSTTALFGRAAAVRAATKGKTDAKKAKTNALFGKKIIMAVKQGGSTDTNANRALAEVIKAAKANSVPVDNINRAIKRASETDTANFSESTFEAYGFGGASMVINCLSDNANRCTADVKSTVNKRGGKIAEQGSVLFMYDRKGKVEIPAVVDEEELLMAAIDAGCDDMELVEGDEEGTSVVYTDPKETNSMVDAVKAIGFEENVKMGLVYVTKAPVECTDEEFEKNMDIIDALEELDDVDSVEHNMS 287          
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: K0THZ2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0THZ2_THAOC)

HSP 1 Score: 206 bits (525), Expect = 2.960e-59
Identity = 119/242 (49.17%), Postives = 164/242 (67.77%), Query Frame = 2
Query:  251 VMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGG-PNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAGETGLALIPSGLADVD--DEAMELNLAAVEALLELEDVDTVDHNMA 967
            ++MGR AA  A  KG+ DAK+ K  A  GKKIIMAVK GG P+   N+QLA+ IK AK+NSVP DNI RAIKRA +   GDF E  +EAYG GG  +++  L+DN NR+ ADVK+   K   K A  GSVLF ++ +G+VE+  EVDEE+++ AAI+AGVDD+E+V+GD EGTS + T PK+   L  A+   G+   + ++L     A V+  +E  E N+  ++AL +L+DVD+V+HNM+
Sbjct:   66 LLMGRAAAVRAATKGKTDAKKAKVNAYYGKKIIMAVKQGGSPDPVANRQLAELIKAAKNNSVPVDNINRAIKRATEKDAGDFSESKFEAYGFGGASLIINVLSDNPNRSTADVKSAVNKNNGKLAESGSVLFMYDLKGKVEIPCEVDEEELLMAAIDAGVDDMELVDGDEEGTSIVYTDPKETSLLFDAVKSMGLEEGSKMSLSHVSKAPVECSEEDFEKNMKIIDALEDLDDVDSVEHNMS 307          
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A0G4EJ73_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJ73_VITBC)

HSP 1 Score: 204 bits (520), Expect = 3.220e-59
Identity = 118/254 (46.46%), Postives = 163/254 (64.17%), Query Frame = 2
Query:  257 MGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQ----GEVDEEQVIEAAIEAGVDDVEV--------VEGDHEGTS-----WILTTPKDLMTLTGALSEAGIAGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
            MGRRAAK+A+ K + +A + K ++R GKKI  A+K GG +   N +LA  IKEAK   VPKDNI R +K+A D    D+ EVIYE YGHGG GM+VT LTDN NRA + VKA  KK G K A+ GSV FQF K  ++E+      ++DE++V E A+E+ VDD+++        +E + +G++     W+LTTP  L  L  AL   GI G T LA IP+ L D  +E +E NL  ++AL +++DVD V+HN++
Sbjct:    1 MGRRAAKVAEKKAKGEAAKSKIYSRYGKKIAGAIKTGGSDPLNNMELASLIKEAKAAGVPKDNIDRLLKKADDAP--DYTEVIYEVYGHGGVGMLVTCLTDNTNRAASVVKAAVKKAGGKDASPGSVSFQFTKMAKIEIPEDRAADLDEDKVFEIALESSVDDIDIRPAPLRPDIENNEDGSTPVPPKWVLTTPNSLKALRDALEANGIEGSTSLAHIPNALVDCSEEELEKNLGLIDALEDIDDVDMVEHNIS 252          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTS7_ECTSI2.560e-19296.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9R2_9STRA3.320e-9365.83Transcriptional regulator TACO1-like protein n=1 T... [more]
A0A6S9GJB7_HETAK1.130e-7254.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TSS5_9STRA1.600e-6849.16Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S4LII5_9EUGL1.400e-6151.46Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S2EDJ1_TRICV1.630e-6049.19Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
B8C5V4_THAPS3.920e-6049.17Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0ATJ5_9STRA2.310e-5947.77Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
K0THZ2_THAOC2.960e-5949.17Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A0G4EJ73_VITBC3.220e-5946.46Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig128contigE-siliculosus-1a_F_contig128:21652..26093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size918
Model size1460
Exons6
Ec32 orthologEc-28_002960.1
Ec32 ortholog descriptionIntegrase, N-terminal zinc-binding domain-like
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.K
EggNOG OGsCOG0217@1,KOG2972@2759
EggNOG free text desc.regulation of translation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0008150,GO:0009507,GO:0009536,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0034248,GO:0034250,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0070129,GO:0070131,GO:0080090,GO:2000112
Seed eggNOG ortholog2880.D8LTS7
Seed ortholog evalue9.7e-153
Seed ortholog score546.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig128.1708.1prot_E-siliculosus-1a_F_contig128.1708.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig128 21704..25603 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.777472-UTR-E-siliculosus-1a_F_contig128:21651..217031622927799.777472-UTR-E-siliculosus-1a_F_contig128:21651..21703Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 21652..21703 +
1696318684.8658834-UTR-E-siliculosus-1a_F_contig128:21651..217031696318684.8658834-UTR-E-siliculosus-1a_F_contig128:21651..21703Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 21652..21703 +
1622927799.8737292-UTR-E-siliculosus-1a_F_contig128:25603..260931622927799.8737292-UTR-E-siliculosus-1a_F_contig128:25603..26093Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 25604..26093 +
1696318684.924353-UTR-E-siliculosus-1a_F_contig128:25603..260931696318684.924353-UTR-E-siliculosus-1a_F_contig128:25603..26093Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig128 25604..26093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.7916079-CDS-E-siliculosus-1a_F_contig128:21703..218851622927799.7916079-CDS-E-siliculosus-1a_F_contig128:21703..21885Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 21704..21885 +
1696318684.8750243-CDS-E-siliculosus-1a_F_contig128:21703..218851696318684.8750243-CDS-E-siliculosus-1a_F_contig128:21703..21885Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 21704..21885 +
1622927799.8066986-CDS-E-siliculosus-1a_F_contig128:22964..230821622927799.8066986-CDS-E-siliculosus-1a_F_contig128:22964..23082Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 22965..23082 +
1696318684.882328-CDS-E-siliculosus-1a_F_contig128:22964..230821696318684.882328-CDS-E-siliculosus-1a_F_contig128:22964..23082Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 22965..23082 +
1622927799.8202891-CDS-E-siliculosus-1a_F_contig128:23765..239241622927799.8202891-CDS-E-siliculosus-1a_F_contig128:23765..23924Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 23766..23924 +
1696318684.8916023-CDS-E-siliculosus-1a_F_contig128:23765..239241696318684.8916023-CDS-E-siliculosus-1a_F_contig128:23765..23924Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 23766..23924 +
1622927799.8325796-CDS-E-siliculosus-1a_F_contig128:24180..243661622927799.8325796-CDS-E-siliculosus-1a_F_contig128:24180..24366Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 24181..24366 +
1696318684.8990571-CDS-E-siliculosus-1a_F_contig128:24180..243661696318684.8990571-CDS-E-siliculosus-1a_F_contig128:24180..24366Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 24181..24366 +
1622927799.8439527-CDS-E-siliculosus-1a_F_contig128:24716..248281622927799.8439527-CDS-E-siliculosus-1a_F_contig128:24716..24828Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 24717..24828 +
1696318684.9064908-CDS-E-siliculosus-1a_F_contig128:24716..248281696318684.9064908-CDS-E-siliculosus-1a_F_contig128:24716..24828Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 24717..24828 +
1622927799.859329-CDS-E-siliculosus-1a_F_contig128:25442..256031622927799.859329-CDS-E-siliculosus-1a_F_contig128:25442..25603Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 25443..25603 +
1696318684.913818-CDS-E-siliculosus-1a_F_contig128:25442..256031696318684.913818-CDS-E-siliculosus-1a_F_contig128:25442..25603Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig128 25443..25603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig128.1708.1

>prot_E-siliculosus-1a_F_contig128.1708.1 ID=prot_E-siliculosus-1a_F_contig128.1708.1|Name=mRNA_E-siliculosus-1a_F_contig128.1708.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=306bp
MAPVGARCLGCALFAAALSGVSAFVVPTASQLQGIRALGRRHHDGRSHQP
TQQQQQRTGRGSAAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIM
AVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEV
IYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFE
KRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMT
LTGALSEAGIAGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTV
DHNMA*
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mRNA from alignment at E-siliculosus-1a_F_contig128:21652..26093+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig128.1708.1 ID=mRNA_E-siliculosus-1a_F_contig128.1708.1|Name=mRNA_E-siliculosus-1a_F_contig128.1708.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4442bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:21652..26093+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACGCAATCGACGCCCACCGCCCACACCATCTGCTGTGACAGGGTTCAAGG GTATGGCTCCTGTTGGTGCTCGTTGCCTGGGGTGCGCCCTGTTTGCCGCC GCCTTGTCCGGCGTCTCGGCGTTCGTTGTTCCCACCGCCTCGCAGCTCCA GGGAATCAGAGCGCTCGGACGCCGGCATCATGATGGGCGGTCACATCAAC CCACACAGCAGCAGCAACAGCGCACAGGTCGCGGGTGAGAGAGAAGAGCT TGCTATGTACCAGTTCTGCAGCAATGCCATGCAGTGGGCATGTCGTGGCA CGGGAATAGTTCATATTGCTCCTGCTTCCGCTGGGAGAGACACCGAATCA GCGGAAGGCCTCGCGCATGTTTCCCGCTCGAGTGCAGGGTGTAGCAGGGT GTGTGCGGTTGCAGTGCACATGAGAGTCGAGCGTGGGCAAGCCGCTCGGG GTCGGCAATTGGCTATGATAGGTGGTGGCAGCTACAGACGGACGTGGTGG TAGTAATGGTACAGCGCATCCTTTCTCTGTAGCTGCTGCGACGTCATGGT CTTACAGTCGTTGAACATGAACGTACACACCTCAATGAATGCTTCGTGTC TCGCCGCATGTCAAGTATCCGCCGACATGTGCCGTCCTTGTTGACTGACT GCCCCAAACAACGGCCGTACTGCTGTATTGTAGCGACAAGCAGTGGATTC ATATGCTGATGTCACTCAACGTGCAATCAATGGCATCTCGTTGTAGTGGG CCTCTTGGTGGGCAGGATGACGGTGCAGCGGCGGAATATACTATTGATGC TTTGCTTACGTACTGCAGCGTACATGTACCATTGCTGGTGTGTCGTTTGC ATACCATCCGGCATCGAGGCCCTTGCCTTTGCATTCAACCTAAGTGTCCG GTATCGTACGAGTCGGTGGTCCGTTATTATCACAAGCATCAACCCTAAAT GTCACATAAGAGAGGAGACAGAAATACGACCAGCCACGATTGAGGGATGT CTTGCTGAAGGTCGGTAACGACTTGGGAAAAAACGAGAAAACGGTTCGTT GAAGAACACGATGTACGAAAGCACTCGTAGCAAACGCTTCGCTTTTTGAA GTCTCCAAGCCATGTGTTCGAGGAGTAACACTAAGGCCTGCACAGCAGCT AATTAAATGTAGTGGTGGGACCTTGCCGTCCACTTGGTGGCCAGCGTTTC CGTTTCATTGGGAAGACACTTGTATCAGCGACGCTCACGACGATCCCTCC CCCCGTCGTCCGCGTTCTTCCTCTCTGGTTCGGGGGAACGGACGGTTGTA TTCATTCTACCAGGAGCGCGGCGGGGGTTGTGATGATGGGTCGGCGTGCC GCCAAGATAGCCAAGGTGAAAGGGCGAGAGGACGCCAAGCGCGGGAAGGC GTTCGCCAGGATCGGCAAAAAAATCATCATGGTGAGTGCCTACATACGCG ATGACGATTGAGGTCGGCAAACACACACACATCCCCCTCACGGGGTCCCA GATGATGGCCTTCAGAAGCATTTTTTTGTGTCAACAGCACCGCGACTAAC GTCTTTTCATTGGTCAGCCGGTTGGCGCGGTCGATGTTAGCAATTAAAAA TAAAAACACGCGCACGTGCGGATGGCACGTACAGTAGTGTGCGACAGAGC GGGGGTGAATCGGGTGGTTGGCGGTTGTCCTCAACCTTGCGTAACCGTCC GTACTTGCCGCTCCGTCATTGCTGCTTGGGACAACTAACTATCGAGGTCC TATCGGCGTTCCGCGAGCGACCCACTGGGCGTGGAGTTTCCCGGCGGCGT CGCCGTCTGCTCCTCCGTGCACATTCACACATTATTTTACCAGCATTCTT GGATTCGTTCTTTGATTTCTAGAATGGTGTACCTCTTCTTTTGGGTAGTT GGCATGTGACCACGGGAAGGGGTCCGCATCAGTTGGACCAGTACAGATAC TGTGAGGTACTGAGAGGAGACCGGAACGGTTTTGAATGCGAAGACAACAA CCAAAACCACAAGCTCAATGTTATAGCAACAACAGCAGCAGCAGCAGCAG CAGTAGTAGCAGCAACGAGGGCCACGACATCGTACGTCGGCATTGTGCTT TGTGCGCCTTGCAGGCCGTGAAGGCGGGAGGGCCGAACGAGGACACCAAC AAGCAGCTGGCCGACACCATCAAGGAGGCCAAGCACAACAGCGTGCCCAA GGACAACATCGCGAGGGCCATTAAGCGGGCGGTCGACGGGTCTCAGGGCG ACTTCAAGGAAGTAATCTACGAGGTGACCGTTTTGTTTCTGCCACCGCAC TTGGTGTGTGAATTTTGTTTTTTTTTTGCCTTCGTTTTTTTGAACATATA CTCCACGCGTTCACTTAAACACTACCCGTTCGAGATATATCCGCAAGCAG TTGTGTTGAAGTCTTTACAGGGAGTGGAAGGAACGCCGTCAATTTTTTAA GGTGTAGTTGAATCACCGCCCCTTCCCCCCCTTTTCTCGGTCCACCGACG ACCCGCCCGTCCCTTTTGACACCGTCCAGGCGTACGGACACGGGGGCACG GGGATGGTTGTCACCGCCCTCACGGACAACGTGAACCGGGCGATCGCAGA CGTGAAGGCGGTGTGGAAAAAGCAAGGACTCAAGCAGGCCGCACAAGGGT CGGTGCTGTTCCAGTTCGAGAAGAGGGGGAGGGTGGAGGTGCAGGGGGAG GTCGACGAAGAGCAGGTGAAGGTTGGGGGCTCCGTAGTTTTGTTTTCAGT AGCTTTCGCAGTTATTTTCTACCAAGTAAACAATTGGTTAAAGCATGCAA TCGGGGAAGTCGAGTTAGGGATGGGGTCTGCGTATCCTCTTCCTGTTCTA TTTTCTCCTGTACCTAATTCCTCGCGGAAGGCGGTCCTTTCTTTTTCATC TTGCACCACCCTTTGATGACCCTGCTGAGCTCTCACGAGCCCACTCCCGA GGCCATTCACCCTTGCATGTACTTCGTCTTCTTACGGTGTTTGTTTTTTC GTGCCATCTGTGTGCCTGACTCTTACCCCTTTGTTGTTTGTGTGCTGTGC GTGTGCCTGGCCCAGGTGATCGAGGCCGCGATCGAGGCCGGGGTAGATGA CGTCGAGGTGGTGGAAGGAGACCACGAGGGGACGTCCTGGATTCTCACGA CACCAAAGGACCTCATGACGCTCACAGGTAAAGTAGGACGTACGCCACAT TGTCGGGGTCTGTTGTTGTTGTTGTTGCTGTTTTTGGTGCTGGCGGTTGT GTGTGTTTTTCGTGGGCCGTTTGTGGGTCCGCCTTGTCCGCTTTCTGTGC CCACGGAACTTTTGGGGTCGCGTAGACGACGCGGTGGAGAGAGGCCCACC AATATTTTTGAGGCCAGCACGAAAACATGGACGGACCGATCCCGAAGAGC CTCATAGGACACATGCACGATCATGATAATAAGACAGGATGCAGATATGA ATGAAGCAGCTGGTTTTTCTTTCATGTATGGCTCGTCCGTCTGTTTCGCT AGCGAAACAGCCCTTCTTCATGCGACCAAATACTTCCCTACCTCCACAAT CACCTTGCCAAGGCCGAAGTTGATGCTGCTATCGAACACCATGGCTGGGA GGCGAGTAGGAGGTTGTAGGAACCACGCGATGAGCTCCGTGAAAAAAAGG AAAGCGTGGACCACGATCAAGAGAGTAAACGCGAGAGCAAACATGAGTTT CCGTAGATGCTACCCCCGTCCCGCCGTTGTCCACGGCCAAGTGGTGCCAC GCATAATTGAAAGCGCATCGTCCCCTCCCCATGGTCAACAGGTGCCTTGA GTGAGGCAGGGATAGCGGGGGAAACCGGCCTGGCCCTGATCCCCTCAGGA CTCGCGGATGTCGACGACGAGGCGATGGAGCTTAACCTAGCGGCGGTAGA AGCACTGTTAGAGCTGGAGGACGTAGACACGGTCGACCACAACATGGCGT AGTGGGGTTTCCATGTCTAGTCTACTATGTCTGTTGATGCGTTTAGAGGG GGGGGGGGGGCGTCGGGCGCTCTCCCTTGAAGCTTGGAAGGCGTTGGCAT GATGGGGAAATCAGTGGTGGCGGATGCCTTTGAGGCAATTTTCGTGGCAT GAGCGGGGGGTTATCTGACCGGTTAGAACTATATACGTGCACTGTGTGGG CACAGGTACAGGAGTGTCTTACGGTAAGTTTCACGCACGACTGTATCTTG AAACAGCGACGGTGGGAATGGGCTTAGATTCCACGTTCTACCGCGAAAAT AGATATGTTTCTACACGGGGGTGAGCAACGGCCTTTTTCCAGCGATCAAA TATGCCTTGCCAATGATGTGCAGGTGCGAAGGCCACGAGCCTACCGTTTT TCAGAGGAGGTGAACCGATACGTGCAGAAGGATGATGATTACGTCCTTCA TTTTCACCGTTCTAGAACCATTCTGCTAGCGATCGAATTAAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig128:21652..26093+

>mRNA_E-siliculosus-1a_F_contig128.1708.1 ID=mRNA_E-siliculosus-1a_F_contig128.1708.1|Name=mRNA_E-siliculosus-1a_F_contig128.1708.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1836bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:21652..26093+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTCCTGTTGGTGCTCGTTGCCTGGGGTGCGCCCTGTTTGCCGCCGC
CTTGTCCGGCGTCTCGGCGTTCGTTGTTCCCACCGCCTCGCAGCTCCAGG
GAATCAGAGCGCTCGGACGCCGGCATCATGATGGGCGGTCACATCAACCC
ACACAGCAGCAGCAACAGCGCACAGGTCGCGGATGGCTCCTGTTGGTGCT
CGTTGCCTGGGGTGCGCCCTGTTTGCCGCCGCCTTGTCCGGCGTCTCGGC
GTTCGTTGTTCCCACCGCCTCGCAGCTCCAGGGAATCAGAGCGCTCGGAC
GCCGGCATCATGATGGGCGGTCACATCAACCCACACAGCAGCAGCAACAG
CGCACAGGTCGCGGGAGCGCGGCGGGGGTTGTGATGATGGGTCGGCGTGC
CGCCAAGATAGCCAAGGTGAAAGGGCGAGAGGACGCCAAGCGCGGGAAGG
CGTTCGCCAGGATCGGCAAAAAAATCATCATGGAGCGCGGCGGGGGTTGT
GATGATGGGTCGGCGTGCCGCCAAGATAGCCAAGGTGAAAGGGCGAGAGG
ACGCCAAGCGCGGGAAGGCGTTCGCCAGGATCGGCAAAAAAATCATCATG
GCCGTGAAGGCGGGAGGGCCGAACGAGGACACCAACAAGCAGCTGGCCGA
CACCATCAAGGAGGCCAAGCACAACAGCGTGCCCAAGGACAACATCGCGA
GGGCCATTAAGCGGGCGGTCGACGGGTCTCAGGGCGACTTCAAGGAAGTA
ATCTACGAGGCCGTGAAGGCGGGAGGGCCGAACGAGGACACCAACAAGCA
GCTGGCCGACACCATCAAGGAGGCCAAGCACAACAGCGTGCCCAAGGACA
ACATCGCGAGGGCCATTAAGCGGGCGGTCGACGGGTCTCAGGGCGACTTC
AAGGAAGTAATCTACGAGGCGTACGGACACGGGGGCACGGGGATGGTTGT
CACCGCCCTCACGGACAACGTGAACCGGGCGATCGCAGACGTGAAGGCGG
TGTGGAAAAAGCAAGGACTCAAGCAGGCCGCACAAGGGTCGGTGCTGTTC
CAGTTCGAGAAGAGGGGGAGGGTGGAGGTGCAGGGGGAGGTCGACGAAGA
GCAGGCGTACGGACACGGGGGCACGGGGATGGTTGTCACCGCCCTCACGG
ACAACGTGAACCGGGCGATCGCAGACGTGAAGGCGGTGTGGAAAAAGCAA
GGACTCAAGCAGGCCGCACAAGGGTCGGTGCTGTTCCAGTTCGAGAAGAG
GGGGAGGGTGGAGGTGCAGGGGGAGGTCGACGAAGAGCAGGTGATCGAGG
CCGCGATCGAGGCCGGGGTAGATGACGTCGAGGTGGTGGAAGGAGACCAC
GAGGGGACGTCCTGGATTCTCACGACACCAAAGGACCTCATGACGCTCAC
AGGTGATCGAGGCCGCGATCGAGGCCGGGGTAGATGACGTCGAGGTGGTG
GAAGGAGACCACGAGGGGACGTCCTGGATTCTCACGACACCAAAGGACCT
CATGACGCTCACAGGTGCCTTGAGTGAGGCAGGGATAGCGGGGGAAACCG
GCCTGGCCCTGATCCCCTCAGGACTCGCGGATGTCGACGACGAGGCGATG
GAGCTTAACCTAGCGGCGGTAGAAGCACTGTTAGAGCTGGAGGACGTAGA
CACGGTCGACCACAACATGGCGTAGGTGCCTTGAGTGAGGCAGGGATAGC
GGGGGAAACCGGCCTGGCCCTGATCCCCTCAGGACTCGCGGATGTCGACG
ACGAGGCGATGGAGCTTAACCTAGCGGCGGTAGAAGCACTGTTAGAGCTG
GAGGACGTAGACACGGTCGACCACAACATGGCGTAG
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