mRNA_E-siliculosus-1a_F_contig128.1708.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: D8LTS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS7_ECTSI) HSP 1 Score: 546 bits (1407), Expect = 2.560e-192 Identity = 294/306 (96.08%), Postives = 296/306 (96.73%), Query Frame = 2
Query: 53 MAPVGARCLGCALFAAALSGVSAFVVPTASQLQGIRALGRRHHDGRSHQPTQQQQQRT-GRGSAAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
MAPVGARCLGCALFAAALSG+SAF+ PTASQLQGI ALGRRHHDGRSHQPTQ GRGSAAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGI GETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA
Sbjct: 1 MAPVGARCLGCALFAAALSGISAFIAPTASQLQGITALGRRHHDGRSHQPTQXXXXXXXGRGSAAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGITGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 306
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A836C9R2_9STRA (Transcriptional regulator TACO1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R2_9STRA) HSP 1 Score: 293 bits (751), Expect = 3.320e-93 Identity = 158/240 (65.83%), Postives = 187/240 (77.92%), Query Frame = 2
Query: 248 VVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
VVMMGRRA KIA+ K + D KR K FARIGKKIIMAVKAGGP+ED NK L+D IKEAK +VPKDNI RAIKRA +G+QGD+KE YEAYGHGG G+++TALTDNVNRA AD++ + K+GLK A+ GSV FQF +RG++EV +DEEQVIEAAI A VDDVEVVEG+ EGTSW+LT P L L L+ GI GE LA IP+ + +V D MELNLAA+EAL L+DVD V+HNMA
Sbjct: 52 VVMMGRRAEKIARTKEKGDLKRTKIFARIGKKIIMAVKAGGPSEDANKLLSDLIKEAKLYNVPKDNIQRAIKRATEGTQGDYKENSYEAYGHGGIGLIITALTDNVNRANADIRTLGTKKGLKMASSGSVAFQFTRRGKIEVNAVLDEEQVIEAAIAADVDDVEVVEGEEEGTSWVLTDPSMLSMLVDGLAAVGITGEPSLAHIPNEVVEVSDVDMELNLAAIEALEGLDDVDQVEHNMA 291
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A6S9GJB7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GJB7_HETAK) HSP 1 Score: 241 bits (614), Expect = 1.130e-72 Identity = 130/239 (54.39%), Postives = 168/239 (70.29%), Query Frame = 2
Query: 248 VVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNM 964
+VMMGRR+ KIA+ KG EDAKRGK FARIGKKII+AVKAGGP ++NK LAD +KEAK +VPK+NI RAIKRA DFKE +YEAYG GG G++++ LTDN NRA+ D+K KK + A+ GSV F F+K+G +EV E+DE+ V+E A+E GVDD + EG+ EGTS + P + + AL AG A + LA +P+ D D+ E NLA +EAL EL+DVD V+HN+
Sbjct: 48 LVMMGRRSEKIARKKGSEDAKRGKIFARIGKKIIVAVKAGGPVVESNKALADILKEAKSYNVPKENIDRAIKRAEAADAADFKEAVYEAYGAGGVGIIISCLTDNTNRALTDIKNAIKKSEVTLASSGSVAFNFDKKGCLEVASELDEDTVLEIALEGGVDDFVLEEGEEEGTSVVYVAPGETKLMADALEAAGHAPKPSLANVPNVWVDCDEATAEANLAVIEALEELDDVDCVEHNI 286
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A7S1TSS5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSS5_9STRA) HSP 1 Score: 231 bits (588), Expect = 1.600e-68 Identity = 146/297 (49.16%), Postives = 190/297 (63.97%), Query Frame = 2
Query: 89 LFAAALSGVSAFVVPTASQLQGIRALGRRHHDGRSHQPTQQQQQRTGRGSAAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEG---DHEGTSWILTTPKDLMTLTGALSEA-GIAGET-GLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNM 964
LFAA L G++A VP L+ ++A +QQ RT A VVMMGRRAAKIA KG++DA + KA+ARIGK II+AVKAGGP+ ++N+QL+ + EAK VPKDNI RAI RA DFKE ++EAYG GG G+++ L+DN NRA VK KK GL AA GSV F F++RGR+EV+G +DEE+V+E AIEA VDD E+ D E + I T P+ + L AL E G+ G T L +P L D +DE ++N+AA++ LLE +DVD+VDHNM
Sbjct: 28 LFAAVL-GMAAGFVPGGRGLRAVQAS--------------RQQPRT----ANTVVMMGRRAAKIAARKGKQDALKAKAYARIGKMIIIAVKAGGPDPESNRQLSQVLLEAKGVGVPKDNIKRAIDRASSADAADFKESVFEAYGKGGVGLLINVLSDNANRAATQVKTAIKKGGLTAAASGSVAFNFDRRGRLEVKGLLDEEEVLEVAIEADVDDYEMSTAKNDDDEDITVIFTAPESMSALGSALGEMDGVEGVTPSLVNVPKSLMDCEDEDYDINVAAIDLLLESDDVDSVDHNM 305
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A7S4LII5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LII5_9EUGL) HSP 1 Score: 216 bits (550), Expect = 1.400e-61 Identity = 123/239 (51.46%), Postives = 161/239 (67.36%), Query Frame = 2
Query: 254 MMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGI-AGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
+ GRR+AKIA KGR DAK+ K +AR GKKIIMAVKAGGP+E N L D IKEAK +VP NI RAIKR + DFKE ++EAYG GG G+++T L+DN NRA ++VK+ K GL A+ GSV F FE+ G + + EVDE+ V+EAA+EA VDD EVV+GD +G +LT PK L AL G+ GE+ L P+ ++ +E E+N AA+E + L+DVD++ HNMA
Sbjct: 185 LYGRRSAKIAATKGRADAKKAKLYARYGKKIIMAVKAGGPDEGANTTLRDVIKEAKDANVPIANIDRAIKRGSENDAADFKESLFEAYGKGGAGLMITVLSDNANRASSEVKSAINKSGLTVASPGSVAFNFERMGAIVCEEEVDEDLVLEAAMEADVDDAEVVQGD-DGEWLVLTDPKQTTQLKAALMAQGVKCGESALIYHPNNYVELSEEDAEINDAAIERIEALDDVDSIAHNMA 422
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A7S2EDJ1_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EDJ1_TRICV) HSP 1 Score: 209 bits (533), Expect = 1.630e-60 Identity = 121/246 (49.19%), Postives = 160/246 (65.04%), Query Frame = 2
Query: 239 AAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNE-DTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAG--ETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
A+ + MGR AA A K + DAK+ K A GKKIIMAVK GG + + N+QLA+ IK AK NSVP DNI RAIKRA + +F E +EAYG GG M++ L+DN NRA ADVKA K+G K A QGSVLF +++RG+VEV +DEE+++ AAI+AG DD+E+ EGD EGTS + T P+D L A+ G + LA + + DE E N+ ++AL EL+DVD+V+HNM+
Sbjct: 56 ASSPLFMGRAAAVRAATKSKTDAKKAKTNALFGKKIIMAVKNGGSTDPNANRQLAEVIKAAKANSVPVDNINRAIKRASETDASNFSESTFEAYGMGGASMIINVLSDNANRATADVKACVNKRGAKIAEQGSVLFMYDRRGKVEVPAVLDEEEILMAAIDAGCDDMELAEGDEEGTSVVYTEPQDASKLLDAVKSLGFEEGVKMSLAWVSKAPVECSDEDFEKNMEVIDALEELDDVDSVEHNMS 301
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: B8C5V4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5V4_THAPS) HSP 1 Score: 206 bits (525), Expect = 3.920e-60 Identity = 118/240 (49.17%), Postives = 158/240 (65.83%), Query Frame = 2
Query: 257 MGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNED-TNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGI--AGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
MGR AA A KG+ DAK+ K A GKKIIMAVK GG + N+QL + IK AK NSVP DNI RAIKRA + GDF E +EAYG GG +++ L+DN NR+ ADVK K K A QGSVLF ++ +G++E+ VDEE+++ AAI+AGV+D+E+VEGD EGTS + T PK+ + A+ G+ + GLA I + +E + N+A +EAL EL+DVD+V+HNM+
Sbjct: 1 MGRAAAVRAATKGKTDAKKAKVNAYYGKKIIMAVKQGGSADPIANRQLGELIKAAKQNSVPVDNINRAIKRATEKDAGDFSEATFEAYGFGGASLIINVLSDNSNRSTADVKTAVNKLKGKMAEQGSVLFMYDLKGKIEIPAVVDEEELLMAAIDAGVEDMELVEGDEEGTSIVYTDPKETSAMFDAVKAIGLEEGSKMGLAHISKAPVECTEEDFDKNMAIIEALEELDDVDSVEHNMS 240
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A7S0ATJ5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ATJ5_9STRA) HSP 1 Score: 206 bits (524), Expect = 2.310e-59 Identity = 118/247 (47.77%), Postives = 159/247 (64.37%), Query Frame = 2
Query: 236 SAAGVVMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNE-DTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAGET--GLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
S + + GR AA A KG+ DAK+ K A GKKIIMAVK GG + + N+ LA+ IK AK NSVP DNI RAIKRA + +F E +EAYG GG MV+ L+DN NR ADVK+ K+G K A QGSVLF ++++G+VE+ VDEE+++ AAI+AG DD+E+VEGD EGTS + T PK+ ++ A+ G GL + + DE E N+ ++AL EL+DVD+V+HNM+
Sbjct: 41 STSTTALFGRAAAVRAATKGKTDAKKAKTNALFGKKIIMAVKQGGSTDTNANRALAEVIKAAKANSVPVDNINRAIKRASETDTANFSESTFEAYGFGGASMVINCLSDNANRCTADVKSTVNKRGGKIAEQGSVLFMYDRKGKVEIPAVVDEEELLMAAIDAGCDDMELVEGDEEGTSVVYTDPKETNSMVDAVKAIGFEENVKMGLVYVTKAPVECTDEEFEKNMDIIDALEELDDVDSVEHNMS 287
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: K0THZ2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0THZ2_THAOC) HSP 1 Score: 206 bits (525), Expect = 2.960e-59 Identity = 119/242 (49.17%), Postives = 164/242 (67.77%), Query Frame = 2
Query: 251 VMMGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGG-PNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQGEVDEEQVIEAAIEAGVDDVEVVEGDHEGTSWILTTPKDLMTLTGALSEAGIAGETGLALIPSGLADVD--DEAMELNLAAVEALLELEDVDTVDHNMA 967
++MGR AA A KG+ DAK+ K A GKKIIMAVK GG P+ N+QLA+ IK AK+NSVP DNI RAIKRA + GDF E +EAYG GG +++ L+DN NR+ ADVK+ K K A GSVLF ++ +G+VE+ EVDEE+++ AAI+AGVDD+E+V+GD EGTS + T PK+ L A+ G+ + ++L A V+ +E E N+ ++AL +L+DVD+V+HNM+
Sbjct: 66 LLMGRAAAVRAATKGKTDAKKAKVNAYYGKKIIMAVKQGGSPDPVANRQLAELIKAAKNNSVPVDNINRAIKRATEKDAGDFSESKFEAYGFGGASLIINVLSDNPNRSTADVKSAVNKNNGKLAESGSVLFMYDLKGKVEIPCEVDEEELLMAAIDAGVDDMELVDGDEEGTSIVYTDPKETSLLFDAVKSMGLEEGSKMSLSHVSKAPVECSEEDFEKNMKIIDALEDLDDVDSVEHNMS 307
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Match: A0A0G4EJ73_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJ73_VITBC) HSP 1 Score: 204 bits (520), Expect = 3.220e-59 Identity = 118/254 (46.46%), Postives = 163/254 (64.17%), Query Frame = 2
Query: 257 MGRRAAKIAKVKGREDAKRGKAFARIGKKIIMAVKAGGPNEDTNKQLADTIKEAKHNSVPKDNIARAIKRAVDGSQGDFKEVIYEAYGHGGTGMVVTALTDNVNRAIADVKAVWKKQGLKQAAQGSVLFQFEKRGRVEVQ----GEVDEEQVIEAAIEAGVDDVEV--------VEGDHEGTS-----WILTTPKDLMTLTGALSEAGIAGETGLALIPSGLADVDDEAMELNLAAVEALLELEDVDTVDHNMA 967
MGRRAAK+A+ K + +A + K ++R GKKI A+K GG + N +LA IKEAK VPKDNI R +K+A D D+ EVIYE YGHGG GM+VT LTDN NRA + VKA KK G K A+ GSV FQF K ++E+ ++DE++V E A+E+ VDD+++ +E + +G++ W+LTTP L L AL GI G T LA IP+ L D +E +E NL ++AL +++DVD V+HN++
Sbjct: 1 MGRRAAKVAEKKAKGEAAKSKIYSRYGKKIAGAIKTGGSDPLNNMELASLIKEAKAAGVPKDNIDRLLKKADDAP--DYTEVIYEVYGHGGVGMLVTCLTDNTNRAASVVKAAVKKAGGKDASPGSVSFQFTKMAKIEIPEDRAADLDEDKVFEIALESSVDDIDIRPAPLRPDIENNEDGSTPVPPKWVLTTPNSLKALRDALEANGIEGSTSLAHIPNALVDCSEEELEKNLGLIDALEDIDDVDMVEHNIS 252 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig128.1708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig128.1708.1 >prot_E-siliculosus-1a_F_contig128.1708.1 ID=prot_E-siliculosus-1a_F_contig128.1708.1|Name=mRNA_E-siliculosus-1a_F_contig128.1708.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=306bp MAPVGARCLGCALFAAALSGVSAFVVPTASQLQGIRALGRRHHDGRSHQPback to top mRNA from alignment at E-siliculosus-1a_F_contig128:21652..26093+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig128.1708.1 ID=mRNA_E-siliculosus-1a_F_contig128.1708.1|Name=mRNA_E-siliculosus-1a_F_contig128.1708.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4442bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:21652..26093+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig128:21652..26093+ >mRNA_E-siliculosus-1a_F_contig128.1708.1 ID=mRNA_E-siliculosus-1a_F_contig128.1708.1|Name=mRNA_E-siliculosus-1a_F_contig128.1708.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1836bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:21652..26093+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |