mRNA_E-siliculosus-1a_F_contig128.1706.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig128.1706.1 vs. uniprot
Match: A0A6H5KEZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ0_9PHAE) HSP 1 Score: 176 bits (445), Expect = 9.950e-54 Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = 1
Query: 37 NVEPVREILSHNYGCTNCTLDGFCLLYGIIPWRSTAKASRTVVPAAGTHRSLVHPQICSDTYLGTPLDDIMNFLPLREAFGEFCRKALCSEVNIDSNAKRA 339
N++PVREILS+NYGCTN TLDGFCLLYGIIPWRST KASRTV+PAA HRS VH QICSD YLGTPLDDIMNFLPLREAFGEFCRKALCSE++ + K A
Sbjct: 32 NIQPVREILSNNYGCTNSTLDGFCLLYGIIPWRSTVKASRTVLPAASAHRSPVHSQICSDAYLGTPLDDIMNFLPLREAFGEFCRKALCSELSSTVDYKAA 132
BLAST of mRNA_E-siliculosus-1a_F_contig128.1706.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 9.570e-14 Identity = 70/226 (30.97%), Postives = 96/226 (42.48%), Query Frame = 1
Query: 1 MTQLHRPFCLRRNVEPVREILSHNYGCTNCTLDGFCLLYGIIPWRSTAKASRTVVPAAGTHRSLVHPQICS-DTYL-GTPLDDIMNFLPLREAFGEFCRKALCSE-----------------------------------------------------------VNIDSNAKRAALLYTEKDEYNSLDLDQRAEIFLLAEREISRLLAENLVAKFRASAAYKELVD 495
+T H P N+ P++E+L H N G +L + R S T+V A T +P S ++Y+ L IMN+LPLREAFGEFC+K+LCSE +NI S+ KR + + + + SLD D R IF+ AEREI R+L +NL+A+F ASA YK VD
Sbjct: 218 ITISHPPIVWILNIRPIQEVLHH--APRNSIPKGVQVLLALSSRRRGGITS-TIVGEAVTPDVSQNPSRHSRESYVESNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTHTSGLGDVATMVNEYIKDGAPSEINIGSDTKRDIMELAKVEAFASLDQDARLLIFVQAEREIRRILEDNLMARFLASAQYKRAVD 440
BLAST of mRNA_E-siliculosus-1a_F_contig128.1706.1 vs. uniprot
Match: D7G0P5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P5_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 7.620e-13 Identity = 65/222 (29.28%), Postives = 90/222 (40.54%), Query Frame = 1
Query: 1 MTQLHRPFCLRRNVEPVREILSHNYGCTNCTLDGFCLLYGIIPWRSTAKASRTVVPAAGTHRSLVHPQICSDTYLGTP-LDDIMNFLPLREAFGEFCRKALCSE--------------------------------------------------------VNIDSNAKRAALLYTEKDEYNSLDLDQRAEIFLLAEREISRLLAENLVAKFRASAAYKELVD 495
MT H N+ P++E+L H N G +L + R +S A T + Q ++Y+ + L IMN+LPLREAFGEFC+K+ CSE +NI S+ K + + + + SLD D R IF AEREI R+L +NL+A+F ASA YK VD
Sbjct: 71 MTLSHPAIVWILNIRPIQEVLHH--APRNSIPKGVQMLLALSSRRRGGSSSAIGGEAVTTDVTQNPSQHGRESYVDSNRLAGIMNYLPLREAFGEFCQKSFCSEFLLDASEFRGVIVEGPVEGDANGSAEEENEAPTRTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHDIMELAKVEAFTSLDQDARRLIFGKAEREIRRILEDNLMARFLASAQYKRAVD 290
BLAST of mRNA_E-siliculosus-1a_F_contig128.1706.1 vs. uniprot
Match: A0A6H5J8W8_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8W8_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 7.980e-13 Identity = 66/219 (30.14%), Postives = 90/219 (41.10%), Query Frame = 1
Query: 28 LRRNVEPVREILSHNYGCTNCTLDGFCLLYGIIPW---RSTAKASRTVVPAAGTHRSLVH---PQICSDTYLGTPLDDIMNFLPLREAFGEFCRKALCSE---------------------------------------------------------VNIDSNAKRAALLYTEKDEYNSLDLDQRAEIFLLAEREISRLLAENLVAKFRASAAYKELVD 495
+ RN+ P++E+L H N G +L + RST+ V + T H P I S+ G IMN+LPLREAFGEFC+K+LCSE +NI S+ K + + + + SLD D R IF+ AEREI R+L +NL+A+F SA YK VD
Sbjct: 126 IERNIRPIQEVLYH--ARRNGIPKGVQMLLALSSRARRRSTSTIGGEEVTSDVTQNPSQHSREPYIDSNRLAG-----IMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVDGDANGSAEEENEAPTRRLGDVATMVNEYIKDGAPSEINIGSDTKHDIMELAKAEAFASLDQDARKLIFVKAEREIKRILEDNLMARFLVSAQYKRAVD 337
BLAST of mRNA_E-siliculosus-1a_F_contig128.1706.1 vs. uniprot
Match: D7G3E2_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E2_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 2.770e-11 Identity = 49/146 (33.56%), Postives = 63/146 (43.15%), Query Frame = 1
Query: 235 LDDIMNFLPLREAFGEFCRKALC-----------------------------------------------------------SEVNIDSNAKRAALLYTEKDEYNSLDLDQRAEIFLLAEREISRLLAENLVAKFRASAAYKELVD 495
L IMN+LPLREAFGEFC+K+LC SE+NI S+ K + + + + SLD D R IF+ AEREI R+L +NL+A+F ASA YK VD
Sbjct: 44 LAGIMNYLPLREAFGEFCQKSLCGESFQFLRDASEFRGVIVEGPVDGDANGSAEEEQEAPVHTSGLGDVAAMVNEYIKDGAPSEINIGSDIKHDIMELAKVETFASLDQDARLLIFVKAEREIRRILEDNLMARFLASAQYKRAVD 189
BLAST of mRNA_E-siliculosus-1a_F_contig128.1706.1 vs. uniprot
Match: D7G0P6_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P6_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 1.410e-10 Identity = 65/229 (28.38%), Postives = 91/229 (39.74%), Query Frame = 1
Query: 34 RNVEPVREILSHNYGCTNCTLDGFCLLYGIIPWRSTAKASRTVVPAAGTHRSLVHPQICSDTYLGTP-LDDIMNFLPLREAFGEFCRKALCSE-----------------------------------------------------------VNIDSNAKRAALLYTEKDEYNSL---------------DLDQRAEIFLLAEREISRLLAENLVAKFRASAAYKELVD 495
RN+ P++E+L H N G +L + R +S A T + Q ++Y+ + L IMN+LPLREAFGEFC+K+LCSE +NI S+ K A + + + + SL D D R IF+ AEREI R+L +NL+A+F ASA YK VD
Sbjct: 143 RNIRPIQEVLHH--APRNSIPKGVQMLLALSSRRRGGSSSPIGGEAVTTDVTQNPSQHGRESYVDSNRLAGIMNYLPLREAFGEFCQKSLCSESFQFLLDASEFRGVIVEGPVEGDANGSAEEENEAPAHTSGLGDVAAMVNEYIKDGAPSEINIGSDTKHAIMELAKVEAFASLEQGRQGGRLEAFALLDQDARKLIFVKAEREIRRILEDNLMARFLASAQYKRAVD 369
BLAST of mRNA_E-siliculosus-1a_F_contig128.1706.1 vs. uniprot
Match: A0A6H5JD29_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD29_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 1.900e-7 Identity = 37/100 (37.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 25 CLRRNVEPVREILSHNYGCTNCTLDGFCLLYGIIPWR--STAKASRTVVPAAGTHRSLVHPQICSDTYLGTP-LDDIMNFLPLREAFGEFCRKALCSEVN 315
C+ N+ P++E+L H N G +L + R S+A V A TH H + ++Y+ + L +MN+LPLREAFGEFC+K+LCSE++
Sbjct: 24 CISGNIRPIQEVLHH--APRNSIPKGVQMLLALSSRRRRSSAAIGGEAVTADVTHNPSRHSR---ESYVDSNRLAGLMNYLPLREAFGEFCQKSLCSEIS 118
BLAST of mRNA_E-siliculosus-1a_F_contig128.1706.1 vs. uniprot
Match: A0A6H5K976_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K976_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 1.370e-5 Identity = 32/93 (34.41%), Postives = 45/93 (48.39%), Query Frame = 1
Query: 37 NVEPVREILSHNYGCTNCTLDGFCLLYGIIPWRSTAKASRTVVPAAGTHRSLVHPQICSDTY--LGTPLDDIMNFLPLREAFGEFCRKALCSE 309
N++PVR++L G L+ +PW T ++ + + P T L L++I+ F PL EAFGEFCRKALCSE
Sbjct: 288 NIQPVRKVLQRRADHP-INAGGIASLFPYVPW--TTRSGAVAIDVMNESKVFTKPSSSKFTSVKLDDKLEEILRFPPLLEAFGEFCRKALCSE 377 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig128.1706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig128.1706.1 >prot_E-siliculosus-1a_F_contig128.1706.1 ID=prot_E-siliculosus-1a_F_contig128.1706.1|Name=mRNA_E-siliculosus-1a_F_contig128.1706.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=173bp MTQLHRPFCLRRNVEPVREILSHNYGCTNCTLDGFCLLYGIIPWRSTAKAback to top mRNA from alignment at E-siliculosus-1a_F_contig128:8799..11693- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig128.1706.1 ID=mRNA_E-siliculosus-1a_F_contig128.1706.1|Name=mRNA_E-siliculosus-1a_F_contig128.1706.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2895bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:8799..11693- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig128:8799..11693- >mRNA_E-siliculosus-1a_F_contig128.1706.1 ID=mRNA_E-siliculosus-1a_F_contig128.1706.1|Name=mRNA_E-siliculosus-1a_F_contig128.1706.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1038bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig128:8799..11693- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |