mRNA_E-siliculosus-1a_F_contig12793.1705.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12793.1705.1
Unique NamemRNA_E-siliculosus-1a_F_contig12793.1705.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12793.1705.1 vs. uniprot
Match: A0A6H5JRN5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.030e-17
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 HAPITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 105
            HAPITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW
Sbjct:  526 HAPITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 560
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BLAST of mRNA_E-siliculosus-1a_F_contig12793.1705.1 vs. uniprot
Match: A0A835ZKA0_9STRA (LISK family protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKA0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 9.840e-14
Identity = 29/35 (82.86%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 HAPITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 105
            HAPIT+ GYL+KKGK+GLKNWQ+RWFVLEG+KLIW
Sbjct:  413 HAPITKCGYLHKKGKTGLKNWQRRWFVLEGTKLIW 447
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BLAST of mRNA_E-siliculosus-1a_F_contig12793.1705.1 vs. uniprot
Match: A0A3B3ZJ74_9GOBI (PH domain-containing protein n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B3ZJ74_9GOBI)

HSP 1 Score: 47.8 bits (112), Expect = 9.080e-6
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    4 APITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 105
            A +T+QG+LYK+G SG+K W KRWFVL    L +
Sbjct:   53 AVVTKQGWLYKQGSSGVKQWNKRWFVLTDRCLFY 86
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BLAST of mRNA_E-siliculosus-1a_F_contig12793.1705.1 vs. uniprot
Match: UPI000A1C46D1 (pleckstrin homology domain-containing family A member 6 n=4 Tax=Oxudercinae TaxID=497678 RepID=UPI000A1C46D1)

HSP 1 Score: 47.8 bits (112), Expect = 3.530e-5
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    4 APITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 105
            A +T+QG+LYK+G SG+K W KRWFVL    L +
Sbjct:  104 AVVTKQGWLYKQGSSGVKQWNKRWFVLTDRCLFY 137
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BLAST of mRNA_E-siliculosus-1a_F_contig12793.1705.1 vs. uniprot
Match: UPI00155E2083 (pleckstrin homology domain-containing family A member 6 isoform X1 n=60 Tax=Percidae TaxID=8165 RepID=UPI00155E2083)

HSP 1 Score: 47.4 bits (111), Expect = 4.820e-5
Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    4 APITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 105
            AP+++QG+LYK+  SG+K W KRWFVL    L +
Sbjct:  104 APVSKQGWLYKQASSGVKQWNKRWFVLADRCLFY 137
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BLAST of mRNA_E-siliculosus-1a_F_contig12793.1705.1 vs. uniprot
Match: UPI00155F457E (pleckstrin homology domain-containing family A member 6 isoform X17 n=2 Tax=Percidae TaxID=8165 RepID=UPI00155F457E)

HSP 1 Score: 47.4 bits (111), Expect = 4.820e-5
Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    4 APITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 105
            AP+++QG+LYK+  SG+K W KRWFVL    L +
Sbjct:  104 APVSKQGWLYKQASSGVKQWNKRWFVLADRCLFY 137
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BLAST of mRNA_E-siliculosus-1a_F_contig12793.1705.1 vs. uniprot
Match: A0A6A4SS30_SCOMX (PH domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4SS30_SCOMX)

HSP 1 Score: 47.0 bits (110), Expect = 6.600e-5
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    4 APITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 105
            A +T+QG+LYK+  SG+K W KRWFVL    L +
Sbjct:  174 AEVTKQGWLYKQASSGVKQWNKRWFVLADRSLFY 207
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BLAST of mRNA_E-siliculosus-1a_F_contig12793.1705.1 vs. uniprot
Match: A0A8D2ZFF5_SCOMX (PH domain-containing protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A8D2ZFF5_SCOMX)

HSP 1 Score: 47.0 bits (110), Expect = 6.600e-5
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    4 APITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 105
            A +T+QG+LYK+  SG+K W KRWFVL    L +
Sbjct:   99 AEVTKQGWLYKQASSGVKQWNKRWFVLADRSLFY 132
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BLAST of mRNA_E-siliculosus-1a_F_contig12793.1705.1 vs. uniprot
Match: UPI001FA8D0E4 (pleckstrin homology domain-containing family A member 6 isoform X14 n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=UPI001FA8D0E4)

HSP 1 Score: 47.0 bits (110), Expect = 6.600e-5
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    4 APITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 105
            A +T+QG+LYK+  SG+K W KRWFVL    L +
Sbjct:   99 AEVTKQGWLYKQASSGVKQWNKRWFVLADRSLFY 132
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BLAST of mRNA_E-siliculosus-1a_F_contig12793.1705.1 vs. uniprot
Match: UPI001FA8E50F (pleckstrin homology domain-containing family A member 6 isoform X15 n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=UPI001FA8E50F)

HSP 1 Score: 47.0 bits (110), Expect = 6.600e-5
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    4 APITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW 105
            A +T+QG+LYK+  SG+K W KRWFVL    L +
Sbjct:   99 AEVTKQGWLYKQASSGVKQWNKRWFVLADRSLFY 132
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12793.1705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JRN5_9PHAE4.030e-17100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZKA0_9STRA9.840e-1482.86LISK family protein kinase n=1 Tax=Tribonema minus... [more]
A0A3B3ZJ74_9GOBI9.080e-655.88PH domain-containing protein n=1 Tax=Periophthalmu... [more]
UPI000A1C46D13.530e-555.88pleckstrin homology domain-containing family A mem... [more]
UPI00155E20834.820e-552.94pleckstrin homology domain-containing family A mem... [more]
UPI00155F457E4.820e-552.94pleckstrin homology domain-containing family A mem... [more]
A0A6A4SS30_SCOMX6.600e-552.94PH domain-containing protein n=1 Tax=Scophthalmus ... [more]
A0A8D2ZFF5_SCOMX6.600e-552.94PH domain-containing protein n=1 Tax=Scophthalmus ... [more]
UPI001FA8D0E46.600e-552.94pleckstrin homology domain-containing family A mem... [more]
UPI001FA8E50F6.600e-552.94pleckstrin homology domain-containing family A mem... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12793contigE-siliculosus-1a_F_contig12793:473..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size108
Model size108
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927799.2895036-CDS-E-siliculosus-1a_F_contig12793:472..5801622927799.2895036-CDS-E-siliculosus-1a_F_contig12793:472..580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12793 473..580 +
1696318684.6588342-CDS-E-siliculosus-1a_F_contig12793:472..5801696318684.6588342-CDS-E-siliculosus-1a_F_contig12793:472..580Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12793 473..580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12793.1705.1prot_E-siliculosus-1a_F_contig12793.1705.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12793 473..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12793.1705.1

>prot_E-siliculosus-1a_F_contig12793.1705.1 ID=prot_E-siliculosus-1a_F_contig12793.1705.1|Name=mRNA_E-siliculosus-1a_F_contig12793.1705.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=36bp
HAPITRQGYLYKKGKSGLKNWQKRWFVLEGSKLIW*
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mRNA from alignment at E-siliculosus-1a_F_contig12793:473..580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12793.1705.1 ID=mRNA_E-siliculosus-1a_F_contig12793.1705.1|Name=mRNA_E-siliculosus-1a_F_contig12793.1705.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=108bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12793:473..580+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACGCGCCCATCACGCGGCAGGGGTACCTGTACAAGAAGGGGAAGAGCGG
CCTCAAGAATTGGCAGAAGAGGTGGTTCGTGCTGGAAGGGTCGAAGCTCA
TCTGGTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12793:473..580+

>mRNA_E-siliculosus-1a_F_contig12793.1705.1 ID=mRNA_E-siliculosus-1a_F_contig12793.1705.1|Name=mRNA_E-siliculosus-1a_F_contig12793.1705.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=216bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12793:473..580+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACGCGCCCATCACGCGGCAGGGGTACCTGTACAAGAAGGGGAAGAGCGG
CCTCAAGAATTGGCAGAAGAGGTGGTTCGTGCTGGAAGGGTCGAAGCTCA
TCTGGTGACACGCGCCCATCACGCGGCAGGGGTACCTGTACAAGAAGGGG
AAGAGCGGCCTCAAGAATTGGCAGAAGAGGTGGTTCGTGCTGGAAGGGTC
GAAGCTCATCTGGTGA
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