mRNA_E-siliculosus-1a_F_contig12778.1698.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12778.1698.1
Unique NamemRNA_E-siliculosus-1a_F_contig12778.1698.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12778.1698.1 vs. uniprot
Match: D8LKR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR8_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 7.600e-30
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 3 
Query:  174 MAPDKSAWIHSVIQARGLRGRWEASRGYDGGWASSTAPSRPGLARQGSVAVAGQ 335
            MAPDKSAWIHSVIQARGLRGRWEASRGYDGGWASSTAPSRPGLARQGSVAV GQ
Sbjct:    1 MAPDKSAWIHSVIQARGLRGRWEASRGYDGGWASSTAPSRPGLARQGSVAVVGQ 54
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BLAST of mRNA_E-siliculosus-1a_F_contig12778.1698.1 vs. uniprot
Match: D8LG34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG34_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 9.790e-12
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 3 
Query:  174 MAPDKSAWIHSVIQARGLRGRWEASRGYDGG 266
            MAPDK AWIHSVIQARGLRGRWEA RGYDGG
Sbjct:    1 MAPDKFAWIHSVIQARGLRGRWEACRGYDGG 31
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12778.1698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKR8_ECTSI7.600e-3098.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG34_ECTSI9.790e-1293.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12778contigE-siliculosus-1a_F_contig12778:56..778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size432
Model size434
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927798.522795-CDS-E-siliculosus-1a_F_contig12778:55..2721622927798.522795-CDS-E-siliculosus-1a_F_contig12778:55..272Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12778 56..272 -
1696318684.215059-CDS-E-siliculosus-1a_F_contig12778:55..2721696318684.215059-CDS-E-siliculosus-1a_F_contig12778:55..272Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12778 56..272 -
1622927798.5383346-CDS-E-siliculosus-1a_F_contig12778:563..7781622927798.5383346-CDS-E-siliculosus-1a_F_contig12778:563..778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12778 564..778 -
1696318684.224986-CDS-E-siliculosus-1a_F_contig12778:563..7781696318684.224986-CDS-E-siliculosus-1a_F_contig12778:563..778Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12778 564..778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12778.1698.1prot_E-siliculosus-1a_F_contig12778.1698.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12778 56..778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12778.1698.1

>prot_E-siliculosus-1a_F_contig12778.1698.1 ID=prot_E-siliculosus-1a_F_contig12778.1698.1|Name=mRNA_E-siliculosus-1a_F_contig12778.1698.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=144bp
AVGEGGGRAYCLSLPRPCERGTKARCYTEDHHQLYSAGGALCDANVTRVL
LHHTPPAPWLLTSPLGYTPLSRQGAYGGGGRRVEDMMVDGHPRQLPRARV
LQGRGRWRWQGSREDGERVSTAAAVNRCGRGGRGPPLYRGLSPV
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mRNA from alignment at E-siliculosus-1a_F_contig12778:56..778-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12778.1698.1 ID=mRNA_E-siliculosus-1a_F_contig12778.1698.1|Name=mRNA_E-siliculosus-1a_F_contig12778.1698.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=723bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12778:56..778- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGTAGGAGAGGGCGGAGGGAGAGCCTACTGTCTATCGTTGCCGCGGCC
GTGTGAGAGGGGGACGAAGGCCCGCTGCTATACAGAGGACCATCACCAGT
TGTATAGCGCCGGCGGCGCCTTGTGTGATGCCAACGTCACACGCGTCCTC
CTTCACCACACCCCCCCGGCTCCATGGCTCCTGACAAGTCCGCTTGGATA
CACTCCGTTATCCAGGTTGGTTGTGTTTTCTGTCTTGTGTCGAAGTTGCG
TTTTCGCGTGATGTGGCGTTTACTCCGTTGTTTGTTAGGGATCAGTCGCA
ATCTTTGAGCATGGAATGAGGAGGCCACCAGATGTCAAGGTAACCGCGTG
TTTTTCTAGTCTCTCTCTGTTCGTGGCGTGATTGCTTGTACTACAACACC
CCCGCGCGACTTGTACGCCGGTCGATGTTCTCACCTCCAGCAATGCCCCG
CTTGCGTTCCTTGGTCAACGGTTTGCTCTCCTCTTGCTGCCACCGGTGGC
TTGCAGGCAAGGGGCCTACGGGGGCGGTGGGAGGCGAGTCGAGGATATGA
TGGTGGATGGGCATCCTCGACAGCTCCCTCGCGCCCGGGTCTTGCAAGGC
AGGGGTCGGTGGCGGTGGCAGGGCAGTAGAGAGGACGGAGAGAGAGTCTC
TACTGCTGCCGCCGTCAACAGGTGTGGTAGAGGTGGACGAGGCCCGCCGC
TGTACCGAGGACTATCACCCGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12778:56..778-

>mRNA_E-siliculosus-1a_F_contig12778.1698.1 ID=mRNA_E-siliculosus-1a_F_contig12778.1698.1|Name=mRNA_E-siliculosus-1a_F_contig12778.1698.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12778:56..778- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCAGTAGGAGAGGGCGGAGGGAGAGCCTACTGTCTATCGTTGCCGCGGCC
GTGTGAGAGGGGGACGAAGGCCCGCTGCTATACAGAGGACCATCACCAGT
TGTATAGCGCCGGCGGCGCCTTGTGTGATGCCAACGTCACACGCGTCCTC
CTTCACCACACCCCCCCGGCTCCATGGCTCCTGACAAGTCCGCTTGGATA
CACTCCGTTATCCAGGCAGTAGGAGAGGGCGGAGGGAGAGCCTACTGTCT
ATCGTTGCCGCGGCCGTGTGAGAGGGGGACGAAGGCCCGCTGCTATACAG
AGGACCATCACCAGTTGTATAGCGCCGGCGGCGCCTTGTGTGATGCCAAC
GTCACACGCGTCCTCCTTCACCACACCCCCCCGGCTCCATGGCTCCTGAC
AAGTCCGCTTGGATACACTCCGTTATCCAGGCAAGGGGCCTACGGGGGCG
GTGGGAGGCGAGTCGAGGATATGATGGTGGATGGGCATCCTCGACAGCTC
CCTCGCGCCCGGGTCTTGCAAGGCAGGGGTCGGTGGCGGTGGCAGGGCAG
TAGAGAGGACGGAGAGAGAGTCTCTACTGCTGCCGCCGTCAACAGGTGTG
GTAGAGGTGGACGAGGCCCGCCGCTGTACCGAGGACTATCACCCGTGGCA
AGGGGCCTACGGGGGCGGTGGGAGGCGAGTCGAGGATATGATGGTGGATG
GGCATCCTCGACAGCTCCCTCGCGCCCGGGTCTTGCAAGGCAGGGGTCGG
TGGCGGTGGCAGGGCAGTAGAGAGGACGGAGAGAGAGTCTCTACTGCTGC
CGCCGTCAACAGGTGTGGTAGAGGTGGACGAGGCCCGCCGCTGTACCGAG
GACTATCACCCGTG
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