mRNA_E-siliculosus-1a_F_contig12761.1692.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12761.1692.1
Unique NamemRNA_E-siliculosus-1a_F_contig12761.1692.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12761.1692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12761contigE-siliculosus-1a_F_contig12761:1011..1324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size138
Model size314
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 orthologEc-12_005750.1
Ec32 ortholog descriptionC2H2 zinc finger protein
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12761.1692.1prot_E-siliculosus-1a_F_contig12761.1692.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12761 1071..1208 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927797.8699465-UTR-E-siliculosus-1a_F_contig12761:1010..10701622927797.8699465-UTR-E-siliculosus-1a_F_contig12761:1010..1070Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12761 1011..1070 +
1696318683.936122-UTR-E-siliculosus-1a_F_contig12761:1010..10701696318683.936122-UTR-E-siliculosus-1a_F_contig12761:1010..1070Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12761 1011..1070 +
1622927797.8902552-UTR-E-siliculosus-1a_F_contig12761:1208..13241622927797.8902552-UTR-E-siliculosus-1a_F_contig12761:1208..1324Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12761 1209..1324 +
1696318683.9557436-UTR-E-siliculosus-1a_F_contig12761:1208..13241696318683.9557436-UTR-E-siliculosus-1a_F_contig12761:1208..1324Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12761 1209..1324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927797.880144-CDS-E-siliculosus-1a_F_contig12761:1070..12081622927797.880144-CDS-E-siliculosus-1a_F_contig12761:1070..1208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12761 1071..1208 +
1696318683.9462543-CDS-E-siliculosus-1a_F_contig12761:1070..12081696318683.9462543-CDS-E-siliculosus-1a_F_contig12761:1070..1208Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12761 1071..1208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12761.1692.1

>prot_E-siliculosus-1a_F_contig12761.1692.1 ID=prot_E-siliculosus-1a_F_contig12761.1692.1|Name=mRNA_E-siliculosus-1a_F_contig12761.1692.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=46bp
MVAFASAPRAPRGRLSNILKGCGAADVLNQPAIAVYLCISKSVFM*
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mRNA from alignment at E-siliculosus-1a_F_contig12761:1011..1324+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12761.1692.1 ID=mRNA_E-siliculosus-1a_F_contig12761.1692.1|Name=mRNA_E-siliculosus-1a_F_contig12761.1692.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=314bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12761:1011..1324+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGACAACCGCCTCCTCGCCCGAGCTCTGGCGGCGGGAGGGGCTGGGGAG
GCGAAGGTGGATGGTAGCCTTCGCGTCGGCGCCCCGCGCGCCCCGCGGCC
GTCTCTCCAACATTCTGAAAGGCTGCGGGGCTGCTGATGTATTGAACCAA
CCGGCTATCGCGGTGTATTTGTGTATTTCGAAGAGCGTATTTATGTAATT
TATGTTGCTACATACAGCGTGCAGGTGTCATTACCCGAGGTATGTATGTG
CAAGTTGAAATTTTTGGTACACGCGATATGTGCAAGTTGGAAAAATTTGG
ACGTGGGCGGGTGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12761:1011..1324+

>mRNA_E-siliculosus-1a_F_contig12761.1692.1 ID=mRNA_E-siliculosus-1a_F_contig12761.1692.1|Name=mRNA_E-siliculosus-1a_F_contig12761.1692.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=276bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12761:1011..1324+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTAGCCTTCGCGTCGGCGCCCCGCGCGCCCCGCGGCCGTCTCTCCAA
CATTCTGAAAGGCTGCGGGGCTGCTGATGTATTGAACCAACCGGCTATCG
CGGTGTATTTGTGTATTTCGAAGAGCGTATTTATGTAAATGGTAGCCTTC
GCGTCGGCGCCCCGCGCGCCCCGCGGCCGTCTCTCCAACATTCTGAAAGG
CTGCGGGGCTGCTGATGTATTGAACCAACCGGCTATCGCGGTGTATTTGT
GTATTTCGAAGAGCGTATTTATGTAA
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