mRNA_E-siliculosus-1a_F_contig1275.1687.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1275.1687.1
Unique NamemRNA_E-siliculosus-1a_F_contig1275.1687.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1275.1687.1 vs. uniprot
Match: A0A6H5JCV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV8_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 7.440e-50
Identity = 128/207 (61.84%), Postives = 130/207 (62.80%), Query Frame = 1 
Query:   46 RVLSSDLADTTDMADLLSGIEPGVDAALLDFMMCDNDNTPVLGAAAPPAEPXXXXXXXXXXXXXXXXQPWVFSSPFSPTMEPVIPSGNGATSGTSPTK-RRVSEDCSSSVPAAAGRMSAGSTXXXXXXXXXXSGDGRTTSPSMMWSRVGSAPNLTNLSCRIQATLPSAHSRGQQPQQPLPASSSXXXXTSAPRPRCSVAISNGGTSK 663
            RVLSSD+ADTTDMADLLSGIEPGVDA                                          PWV S PFSPTMEPVIPS NGATSGTSPTK RRVSED SS VPAAAGRMSAGST          SGDGRT SPSM+WSRVGSAPNLTNLS  IQATLPSAHSRGQQ          XXXX      RCSVAISNGGTSK
Sbjct:  221 RVLSSDVADTTDMADLLSGIEPGVDA------------------------------------------PWVVSGPFSPTMEPVIPSCNGATSGTSPTKKRRVSEDRSSCVPAAAGRMSAGSTDAAANSDNNNSGDGRTASPSMIWSRVGSAPNLTNLSFSIQATLPSAHSRGQQXXXXXXXXXXXXXXXXXXX-RCSVAISNGGTSK 384
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1275.1687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCV8_9PHAE7.440e-5061.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1275contigE-siliculosus-1a_F_contig1275:33208..34630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size891
Model size891
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1275.1687.1prot_E-siliculosus-1a_F_contig1275.1687.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1275 33208..34630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927797.057131-CDS-E-siliculosus-1a_F_contig1275:33207..332921622927797.057131-CDS-E-siliculosus-1a_F_contig1275:33207..33292Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1275 33208..33292 -
1696318683.4010458-CDS-E-siliculosus-1a_F_contig1275:33207..332921696318683.4010458-CDS-E-siliculosus-1a_F_contig1275:33207..33292Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1275 33208..33292 -
1622927797.0695553-CDS-E-siliculosus-1a_F_contig1275:33396..340791622927797.0695553-CDS-E-siliculosus-1a_F_contig1275:33396..34079Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1275 33397..34079 -
1696318683.4099417-CDS-E-siliculosus-1a_F_contig1275:33396..340791696318683.4099417-CDS-E-siliculosus-1a_F_contig1275:33396..34079Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1275 33397..34079 -
1622927797.0821042-CDS-E-siliculosus-1a_F_contig1275:34507..346301622927797.0821042-CDS-E-siliculosus-1a_F_contig1275:34507..34630Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1275 34508..34630 -
1696318683.4192302-CDS-E-siliculosus-1a_F_contig1275:34507..346301696318683.4192302-CDS-E-siliculosus-1a_F_contig1275:34507..34630Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1275 34508..34630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1275.1687.1

>prot_E-siliculosus-1a_F_contig1275.1687.1 ID=prot_E-siliculosus-1a_F_contig1275.1687.1|Name=mRNA_E-siliculosus-1a_F_contig1275.1687.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=297bp
MKPLLTTNASSSPSTRVLSSDLADTTDMADLLSGIEPGVDAALLDFMMCD
NDNTPVLGAAAPPAEPPTLNIQQQQPQQQQQQQPWVFSSPFSPTMEPVIP
SGNGATSGTSPTKRRVSEDCSSSVPAAAGRMSAGSTDAAASSDNNNSGDG
RTTSPSMMWSRVGSAPNLTNLSCRIQATLPSAHSRGQQPQQPLPASSSAT
ATTSAPRPRCSVAISNGGTSKKQSTTGRPPSGASANRGGGGGNLQMQQAV
GGGGGGGGGVVPGRGRTHRPSNNTGGSEKNSGSSSSSSSSSSSNNAM
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mRNA from alignment at E-siliculosus-1a_F_contig1275:33208..34630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1275.1687.1 ID=mRNA_E-siliculosus-1a_F_contig1275.1687.1|Name=mRNA_E-siliculosus-1a_F_contig1275.1687.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1423bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1275:33208..34630- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAACCTCTTCTCACGACAAACGCTTCCAGCTCTCCCAGCACCCGCGT
GCTGTCGTCGGACCTCGCAGACACCACGGACATGGCGGACCTCCTGTCCG
GCATCGAGCCCGGCGTAGATGCTGTAAGTTCGGTTCAGCGTCCCATGACA
CTCACACCGCCTCATCCCGTTCCTACGATTTCCCGTCCGTCAGAGACGCC
CAATCTTCTGGCTGACGACCCTCACGCGATTTTGTTTTTTCCGGGTCAAC
TACGTACACACGCCGCGCGGCGTTTGCTTGCGGGGCCACGAATCGATCGC
ATGCCGCGCGTGATTTTTTGTAGTCGTTGTCGCCCGGCCTCGTGGCGTAG
CACGGCGGCCGGCGTCCCTGCGGCCGCAAGCACAAACGAACACCCAAGCC
GGCCAATGTGTTTTGGCGAACGTTGGTGGCGTTGTTTGTCCCTCCCGACT
GTACTGGAACAGTACATCGTTTCACAAGCATCCTACATACCTGATTCCTC
CGTCCATTTGTCGTCGTGTCTGTCTTCTTCTCTCGCCTCTCGTCTCACAA
GGCCCTCCTTGACTTCATGATGTGCGACAACGACAACACGCCGGTCCTCG
GCGCCGCCGCGCCGCCTGCGGAGCCCCCAACTCTCAACATCCAACAGCAA
CAGCCCCAGCAGCAGCAGCAGCAGCAGCCGTGGGTGTTTTCCAGCCCGTT
TTCTCCGACGATGGAGCCCGTGATTCCTAGCGGCAACGGGGCGACATCTG
GGACGTCCCCAACCAAGAGGCGGGTATCAGAGGATTGTTCCTCTAGCGTG
CCCGCTGCCGCAGGCCGTATGTCAGCGGGCTCGACCGATGCCGCTGCCAG
CAGCGACAACAACAACAGCGGCGACGGCAGGACGACCTCACCCTCGATGA
TGTGGAGCCGAGTGGGGTCGGCCCCGAACCTTACCAACTTGTCGTGCCGC
ATCCAAGCCACCCTTCCGAGTGCCCACAGCCGAGGGCAGCAGCCGCAGCA
GCCGCTGCCGGCATCGTCTTCGGCTACGGCCACCACCTCGGCGCCTCGCC
CGCGGTGTAGCGTTGCCATCTCGAACGGCGGCACGTCGAAGAAGCAGTCG
ACGACCGGAAGGCCCCCGTCCGGCGCGTCAGCCAACCGTGGCGGCGGCGG
CGGCAACCTCCAGATGCAGCAAGCCGTTGGGGGGGGGGGGGGGGGGGGGG
GGGGGGTTGTCCCCGGGAGGGGGAGGACACACCGGTGAACCCCCGGCACC
GCCCACTGCCGGTTTCCGTCCTCTTCTTGAAAAAAANNNNNNNNNCGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGTCCGGTGGTAGTCCCAGCAACAA
CACCGGGGGGAGTGAGAAAAACAGCGGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAACAACGCGATG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1275:33208..34630-

>mRNA_E-siliculosus-1a_F_contig1275.1687.1 ID=mRNA_E-siliculosus-1a_F_contig1275.1687.1|Name=mRNA_E-siliculosus-1a_F_contig1275.1687.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1782bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1275:33208..34630- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAACCTCTTCTCACGACAAACGCTTCCAGCTCTCCCAGCACCCGCGT
GCTGTCGTCGGACCTCGCAGACACCACGGACATGGCGGACCTCCTGTCCG
GCATCGAGCCCGGCGTAGATGCTATGAAACCTCTTCTCACGACAAACGCT
TCCAGCTCTCCCAGCACCCGCGTGCTGTCGTCGGACCTCGCAGACACCAC
GGACATGGCGGACCTCCTGTCCGGCATCGAGCCCGGCGTAGATGCTGCCC
TCCTTGACTTCATGATGTGCGACAACGACAACACGCCGGTCCTCGGCGCC
GCCGCGCCGCCTGCGGAGCCCCCAACTCTCAACATCCAACAGCAACAGCC
CCAGCAGCAGCAGCAGCAGCAGCCGTGGGTGTTTTCCAGCCCGTTTTCTC
CGACGATGGAGCCCGTGATTCCTAGCGGCAACGGGGCGACATCTGGGACG
TCCCCAACCAAGAGGCGGGTATCAGAGGATTGTTCCTCTAGCGTGCCCGC
TGCCGCAGGCCGTATGTCAGCGGGCTCGACCGATGCCGCTGCCAGCAGCG
ACAACAACAACAGCGGCGACGGCAGGACGACCTCACCCTCGATGATGTGG
AGCCGAGTGGGGTCGGCCCCGAACCTTACCAACTTGTCGTGCCGCATCCA
AGCCACCCTTCCGAGTGCCCACAGCCGAGGGCAGCAGCCGCAGCAGCCGC
TGCCGGCATCGTCTTCGGCTACGGCCACCACCTCGGCGCCTCGCCCGCGG
TGTAGCGTTGCCATCTCGAACGGCGGCACGTCGAAGAAGCAGTCGACGAC
CGGAAGGCCCCCGTCCGGCGCGTCAGCCAACCGTGGCGGCGGCGGCGGCA
ACCTCCAGATGCAGCAAGCCGTTGGGGGGGGGGGGGGGGGGGGGGGGGGG
GTTGTCCCCGGGAGGGGGAGGACACACCGGCCCTCCTTGACTTCATGATG
TGCGACAACGACAACACGCCGGTCCTCGGCGCCGCCGCGCCGCCTGCGGA
GCCCCCAACTCTCAACATCCAACAGCAACAGCCCCAGCAGCAGCAGCAGC
AGCAGCCGTGGGTGTTTTCCAGCCCGTTTTCTCCGACGATGGAGCCCGTG
ATTCCTAGCGGCAACGGGGCGACATCTGGGACGTCCCCAACCAAGAGGCG
GGTATCAGAGGATTGTTCCTCTAGCGTGCCCGCTGCCGCAGGCCGTATGT
CAGCGGGCTCGACCGATGCCGCTGCCAGCAGCGACAACAACAACAGCGGC
GACGGCAGGACGACCTCACCCTCGATGATGTGGAGCCGAGTGGGGTCGGC
CCCGAACCTTACCAACTTGTCGTGCCGCATCCAAGCCACCCTTCCGAGTG
CCCACAGCCGAGGGCAGCAGCCGCAGCAGCCGCTGCCGGCATCGTCTTCG
GCTACGGCCACCACCTCGGCGCCTCGCCCGCGGTGTAGCGTTGCCATCTC
GAACGGCGGCACGTCGAAGAAGCAGTCGACGACCGGAAGGCCCCCGTCCG
GCGCGTCAGCCAACCGTGGCGGCGGCGGCGGCAACCTCCAGATGCAGCAA
GCCGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGTCCCCGGGAGGGG
GAGGACACACCGTCCCAGCAACAACACCGGGGGGAGTGAGAAAAACAGCG
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACGCGATGTCC
CAGCAACAACACCGGGGGGAGTGAGAAAAACAGCGGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAACAACGCGATG
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