mRNA_E-siliculosus-1a_F_contig1274.1682.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1274.1682.1
Unique NamemRNA_E-siliculosus-1a_F_contig1274.1682.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1274contigE-siliculosus-1a_F_contig1274:31419..32280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size531
Model size862
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1274.1682.1prot_E-siliculosus-1a_F_contig1274.1682.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1274 31712..32242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.9125104-UTR-E-siliculosus-1a_F_contig1274:31418..317111622927795.9125104-UTR-E-siliculosus-1a_F_contig1274:31418..31711Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1274 31419..31711 +
1696318682.78043-UTR-E-siliculosus-1a_F_contig1274:31418..317111696318682.78043-UTR-E-siliculosus-1a_F_contig1274:31418..31711Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1274 31419..31711 +
1622927795.945641-UTR-E-siliculosus-1a_F_contig1274:32242..322801622927795.945641-UTR-E-siliculosus-1a_F_contig1274:32242..32280Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1274 32243..32280 +
1696318682.79974-UTR-E-siliculosus-1a_F_contig1274:32242..322801696318682.79974-UTR-E-siliculosus-1a_F_contig1274:32242..32280Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1274 32243..32280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.9280944-CDS-E-siliculosus-1a_F_contig1274:31711..322421622927795.9280944-CDS-E-siliculosus-1a_F_contig1274:31711..32242Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 31712..32242 +
1696318682.7888148-CDS-E-siliculosus-1a_F_contig1274:31711..322421696318682.7888148-CDS-E-siliculosus-1a_F_contig1274:31711..32242Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 31712..32242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1274.1682.1

>prot_E-siliculosus-1a_F_contig1274.1682.1 ID=prot_E-siliculosus-1a_F_contig1274.1682.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1682.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=177bp
MRHVAKEEPPKLVTDWTHTKQHGVTTVSLVVPPVYEPTYTISRADFCCRR
KQTRSFSPPNKSLLPFYSYMHVQHVTSHTHPQHFLTPNQHMTRMWCSPDL
YSKKIKNGSTPNGTQPPREKGHNGHGKQHTHGTHTTKTHKITHPLIAVFN
DFSQPSYGTHTPPRRLHLLINDTSAP*
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mRNA from alignment at E-siliculosus-1a_F_contig1274:31419..32280+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1274.1682.1 ID=mRNA_E-siliculosus-1a_F_contig1274.1682.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1682.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=862bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1274:31419..32280+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCTTTTTTAGCATCTTTGCATCTTTGCTTTGATTCTCTTCTTCGCCGCA
GCTGAATTCCCTGGGTCTCCACAAACCTACGATCACGAGGTTCGTGGCCC
TGTCTCCGCATACACCAGCCCTCGCCAACGCACCGAGCGTTTCACCTCGG
GTCACAGGCAGCAGTAGCAGCAGCGAAAAGGTACAAGACACACGGACTCA
CACGCGCCGCGGAGGCAAACGCCCCACGCGTCCTTTCACTCGCGACGTTC
TCCACCACCGATGAAGATATAGCGCCACGCTAGCCGCGGCCCAATGCGAC
ACGTTGCAAAGGAGGAACCACCAAAGCTGGTCACTGATTGGACACACACT
AAACAGCACGGCGTTACGACCGTGAGCCTTGTCGTCCCTCCCGTTTATGA
GCCCACCTATACAATCTCGCGGGCAGATTTCTGCTGCCGCCGCAAACAAA
CAAGAAGCTTCTCGCCCCCCAACAAGAGCTTGTTGCCCTTTTACTCTTAC
ATGCATGTACAACACGTGACGTCACACACTCACCCCCAGCACTTTCTGAC
TCCCAACCAACACATGACGCGTATGTGGTGCTCCCCAGACCTCTATTCAA
AAAAAATAAAAAATGGTAGTACACCAAATGGTACACAGCCCCCAAGAGAG
AAAGGACACAACGGGCACGGGAAACAACACACACACGGCACACACACCAC
CAAGACGCACAAGATAACCCACCCCCTGATTGCAGTCTTTAACGACTTCA
GTCAACCTTCTTACGGCACACACACACCACCTAGACGTTTGCACCTCCTG
ATTAACGATACATCAGCCCCCTAGACAATATCCGAGTTTCTAGTAACCCC
TGCATCCACCGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1274:31419..32280+

>mRNA_E-siliculosus-1a_F_contig1274.1682.1 ID=mRNA_E-siliculosus-1a_F_contig1274.1682.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1682.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1062bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1274:31419..32280+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGACACGTTGCAAAGGAGGAACCACCAAAGCTGGTCACTGATTGGAC
ACACACTAAACAGCACGGCGTTACGACCGTGAGCCTTGTCGTCCCTCCCG
TTTATGAGCCCACCTATACAATCTCGCGGGCAGATTTCTGCTGCCGCCGC
AAACAAACAAGAAGCTTCTCGCCCCCCAACAAGAGCTTGTTGCCCTTTTA
CTCTTACATGCATGTACAACACGTGACGTCACACACTCACCCCCAGCACT
TTCTGACTCCCAACCAACACATGACGCGTATGTGGTGCTCCCCAGACCTC
TATTCAAAAAAAATAAAAAATGGTAGTACACCAAATGGTACACAGCCCCC
AAGAGAGAAAGGACACAACGGGCACGGGAAACAACACACACACGGCACAC
ACACCACCAAGACGCACAAGATAACCCACCCCCTGATTGCAGTCTTTAAC
GACTTCAGTCAACCTTCTTACGGCACACACACACCACCTAGACGTTTGCA
CCTCCTGATTAACGATACATCAGCCCCCTAGATGCGACACGTTGCAAAGG
AGGAACCACCAAAGCTGGTCACTGATTGGACACACACTAAACAGCACGGC
GTTACGACCGTGAGCCTTGTCGTCCCTCCCGTTTATGAGCCCACCTATAC
AATCTCGCGGGCAGATTTCTGCTGCCGCCGCAAACAAACAAGAAGCTTCT
CGCCCCCCAACAAGAGCTTGTTGCCCTTTTACTCTTACATGCATGTACAA
CACGTGACGTCACACACTCACCCCCAGCACTTTCTGACTCCCAACCAACA
CATGACGCGTATGTGGTGCTCCCCAGACCTCTATTCAAAAAAAATAAAAA
ATGGTAGTACACCAAATGGTACACAGCCCCCAAGAGAGAAAGGACACAAC
GGGCACGGGAAACAACACACACACGGCACACACACCACCAAGACGCACAA
GATAACCCACCCCCTGATTGCAGTCTTTAACGACTTCAGTCAACCTTCTT
ACGGCACACACACACCACCTAGACGTTTGCACCTCCTGATTAACGATACA
TCAGCCCCCTAG
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