mRNA_E-siliculosus-1a_F_contig1274.1678.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1274.1678.1
Unique NamemRNA_E-siliculosus-1a_F_contig1274.1678.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1274.1678.1 vs. uniprot
Match: A0A6H5LBB4_9PHAE (TsaA-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBB4_9PHAE)

HSP 1 Score: 1137 bits (2941), Expect = 0.000e+0
Identity = 609/641 (95.01%), Postives = 617/641 (96.26%), Query Frame = 3 
Query:  246 MGPTVAAVATNILALSSALVVGFAVGRFAGGGGNKETQQHPCSVRGAKRRARIKKSEDNSRARAAGLASXXXXXXXXXXXXXXXXXXXRSRKKKLAPRCLALDAWTRVARSYIKSIGEGDYESLLLLPRACFIVAGRFVPYAECRDQLVSLGQARAATAGVEQLRVLYVSCSWASAGGGEGTGWAVQDFETTRAYLQRNPDLSFVYVGRSCVAGSSSSTRHVRSTQLRHVTPALLRSDAVLVLPRLAEHPGGEEGSGSMATRYTDFECSVRGSRSRMVLAIAAVGQAKVSVAFRAGSYPESVVELELGKSNVRATAKQAADALRAAAAKRPQKSTAAVVKEACENWLAADLNPLSALEQARTVVEEAQKSDDGEALENIQSMRPAPSFAANARAALGDEFVGAERELALSMLLFAVLCSQPKERATYTDNFAEDVGKMEISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHEGQGDFLPKFSVGATLVHTNAGSQRSPTRTASRKPPAADQVEAS 2168
            MGPTVA VA NILALSSALVVG+AVGRF GGGG KETQQHPCSVRGAKRRARIKKSEDNSRARAAGLASXXXXXXXXXXXXXXXXX  RSRKKKLAPRCLALDAWTRVARSYIKSIGEGDYESLLLLPR CFIVAGRFVPYAECRDQLVSLGQARAATAGVEQLRVLYVSCSWASAGGGEGTGWAVQDFETTRAYLQRNPDLSFVYVGRSCV GSSSST HVRSTQLRHV PALLRSDAVLVLPRLA+ PGGEEGSGS  TRYTDFECS RGSRSRMVLAIAAVGQAKV VAFRAGSYPESVVELELGKSNVRATAKQA DALRAAAAKRPQKSTAAVV+EACENWL ADLNPLSALEQAR VVEEAQ+SDDGEALENIQSMRPAPSFAANARAALGDEF+G ERELALSMLLFAVLCSQ KERATYT+NF EDVGKMEISY PVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHE QGDFLPKFSVGATLVHT+AGS+RSPTRTASRKPP ADQVEAS
Sbjct:    1 MGPTVAVVAANILALSSALVVGYAVGRFEGGGGKKETQQHPCSVRGAKRRARIKKSEDNSRARAAGLASXXXXXXXXXXXXXXXXXT-RSRKKKLAPRCLALDAWTRVARSYIKSIGEGDYESLLLLPRECFIVAGRFVPYAECRDQLVSLGQARAATAGVEQLRVLYVSCSWASAGGGEGTGWAVQDFETTRAYLQRNPDLSFVYVGRSCVVGSSSSTGHVRSTQLRHVAPALLRSDAVLVLPRLAKSPGGEEGSGSTGTRYTDFECSARGSRSRMVLAIAAVGQAKVFVAFRAGSYPESVVELELGKSNVRATAKQAVDALRAAAAKRPQKSTAAVVEEACENWLGADLNPLSALEQARAVVEEAQRSDDGEALENIQSMRPAPSFAANARAALGDEFIGEERELALSMLLFAVLCSQRKERATYTENFVEDVGKMEISYCPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHERQGDFLPKFSVGATLVHTDAGSKRSPTRTASRKPPTADQVEAS 640
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BLAST of mRNA_E-siliculosus-1a_F_contig1274.1678.1 vs. uniprot
Match: A0A835YNQ9_9STRA (TsaA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNQ9_9STRA)

HSP 1 Score: 224 bits (570), Expect = 7.130e-65
Identity = 103/161 (63.98%), Postives = 126/161 (78.26%), Query Frame = 3 
Query: 1578 VAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHEGQGDFLP 2060
            + VVRSPY+ERFGTPRQ  VTA VL G AQ GQ+VF RGR +E AL+DL GFD +WV+++MHLN+GWNPKV+PPR P  ++GLFSTRSPHRPN+IALS++++  VD     + V GLDLLDGTP+LDIKPY+ YCDAFP  K GWL+ L S  E   D+LP
Sbjct:    6 IGVVRSPYKERFGTPRQANVTAGVLEGKAQHGQLVFSRGRNFEVALEDLDGFDYVWVISYMHLNQGWNPKVKPPRGPRVKRGLFSTRSPHRPNSIALSAVKIVSVDPKGLTVTVEGLDLLDGTPILDIKPYVPYCDAFPGAKTGWLEELSSIDEV--DYLP 164
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BLAST of mRNA_E-siliculosus-1a_F_contig1274.1678.1 vs. uniprot
Match: A0A7S3XP01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP01_HETAK)

HSP 1 Score: 207 bits (526), Expect = 1.460e-57
Identity = 99/172 (57.56%), Postives = 124/172 (72.09%), Query Frame = 3 
Query: 1509 KERATYTDNFAEDVGKMEISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERK-GLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDA 2021
            K +  YT+ F        +S   +AVVRSPY+ERFGTPRQP VT   L G AQ G+IVF + R +E ALQDL GF+  W++T+ HLNKGWNPKV+PPR   + K GLF+TRSPHRPN I LS+ ++  VD   GV+ V GLDLLDGTPVLD+KPY+ Y DAFP+ +AGWL++
Sbjct:   55 KPQQFYTEQFTTPES---VSMETIAVVRSPYKERFGTPRQPVVTKGTLGGSAQIGEIVFKKNRNFEIALQDLEGFEYCWLITYFHLNKGWNPKVKPPRGKHDAKLGLFATRSPHRPNPIGLSACKIHSVDHRQGVVRVAGLDLLDGTPVLDLKPYVPYADAFPHARAGWLNS 223
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BLAST of mRNA_E-siliculosus-1a_F_contig1274.1678.1 vs. uniprot
Match: A0A0G4F040_VITBC (TsaA-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F040_VITBC)

HSP 1 Score: 196 bits (497), Expect = 2.860e-53
Identity = 100/189 (52.91%), Postives = 128/189 (67.72%), Query Frame = 3 
Query: 1536 FAEDVGKME-ISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVR--PPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHE-GQGDF---LPKFSVGAT 2081
            +AED    E I   P+ VVRSPY+ERFGTPRQP VT   L G  Q   +  LRG GYE  L+D+ GF+ +W++T+MHLN+GW  KVR  P +LP  R GLF+TR+PHRPN +ALS++ V  VD   G +++ GLDLLDGTPVLDIKPY+ Y DAFP+  AGWLD    + + G+ +F   LP +  G T
Sbjct:   77 YAEDADVPEAIEMHPIGVVRSPYKERFGTPRQPVVTEGTLGGVKQNATVQLLRGHGYEACLEDVEGFERVWLITYMHLNQGWRSKVRVYPRKLPR-RLGLFATRAPHRPNQLALSAVEVVGVDVDAGQLHILGLDLLDGTPVLDIKPYVPYADAFPDSAAGWLDQYDREQQMGRDEFGHELPPWCAGDT 264
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BLAST of mRNA_E-siliculosus-1a_F_contig1274.1678.1 vs. uniprot
Match: A0A7S1WEL1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WEL1_ALECA)

HSP 1 Score: 194 bits (492), Expect = 3.280e-53
Identity = 86/164 (52.44%), Postives = 123/164 (75.00%), Query Frame = 3 
Query: 1557 MEISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEAL--QDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHEG 2042
            ++++ R + VVRSPY+ERFG PRQP ++  VL G AQEG I FL     + AL  +DL GF+ IW++ ++HLN+GW+P+V PPR   +++GLF+TRSPHRPN I+LS+ ++  VDA    + V GLDLLDGTPVLD+KPY+ YCD++P+ +AGW+D +  +H+G
Sbjct:   39 LQVTLRTIGVVRSPYKERFGCPRQPPISKGVLGGSAQEGTIQFLDNPDGDIALALKDLEGFERIWIVGYLHLNEGWSPRVTPPRGARQKRGLFATRSPHRPNHISLSACQLLSVDAKAKTLTVRGLDLLDGTPVLDVKPYVPYCDSYPSARAGWIDEVEGEHDG 202
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BLAST of mRNA_E-siliculosus-1a_F_contig1274.1678.1 vs. uniprot
Match: R1DL83_EMIHU (TsaA-like domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DL83_EMIHU)

HSP 1 Score: 196 bits (497), Expect = 7.140e-53
Identity = 97/180 (53.89%), Postives = 121/180 (67.22%), Query Frame = 3 
Query: 1524 YTDNFAEDVGKMEISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERK-GLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHEGQGDFLP 2060
            YTD FA D     ++  P+ V+RSPY+ERFGTPRQP VT  V  GGAQ G I      G +  L+ L+GFD  W +T MHLN GW P VRPPR P   K G+F+TR+PHRPN IALS+L+V  VD A   + V GLDLLDGTPVLD+KPY+ Y D+FP  KAGW+D + ++ +  G + P
Sbjct:   32 YTDAFA-DHAAAPVTLTPIGVIRSPYKERFGTPRQPTVTTQVSGGGAQRGCIELRPDAGLDHTLRGLAGFDYCWAITLMHLNAGWKPLVRPPRGPRRAKQGVFATRAPHRPNPIALSALKVVEVDEAALRVTVEGLDLLDGTPVLDLKPYVPYADSFPRAKAGWVDEVRAEEDRLGYWPP 210
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BLAST of mRNA_E-siliculosus-1a_F_contig1274.1678.1 vs. uniprot
Match: UPI001AD54E4C (tRNA (Adenine(37)-N6)-methyltransferase n=2 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=UPI001AD54E4C)

HSP 1 Score: 191 bits (485), Expect = 9.660e-53
Identity = 89/152 (58.55%), Postives = 113/152 (74.34%), Query Frame = 3 
Query: 1578 VAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSD 2033
            +  V SPY+ERFGTPRQP VT   L   AQE  I  + GR +E+AL+DL GF+ IWVL  +HLN+GWNP+V PPR P+ ++GLF+TR+PHRPN+I LS+L++  +D     + V G+DLLDGTPVLDIKPYI Y DAFP  +AGWL+ L SD
Sbjct:   25 IGYVHSPYKERFGTPRQPPVTEQTLDDRAQEAMIELVPGRNFEQALKDLEGFEYIWVLAWLHLNEGWNPQVIPPRGPKVKRGLFATRAPHRPNSIGLSALKLVGIDGRT--LKVSGIDLLDGTPVLDIKPYIPYSDAFPKARAGWLEGLKSD 174
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1678.1 vs. uniprot
Match: A0A7V8E2B3_9BACT (TsaA-like domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V8E2B3_9BACT)

HSP 1 Score: 189 bits (481), Expect = 3.500e-52
Identity = 92/172 (53.49%), Postives = 118/172 (68.60%), Query Frame = 3 
Query: 1509 KERATYTDNFAEDVGKMEISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDAL 2024
            K +    D+ +       +S   +  VRSPY+ERFGTPRQP VT   L   A E  I  L GR +E+AL+DL GFD IWVL  +HLN+GW+P+V PPR PE ++GLF+TR+PHRPN I+LS+LR+  ++    V+ V G+DLLDGTPVLDIKPYI Y DAFP+ + GWL  L
Sbjct:    2 KRKKPAQDHTSRSDPAASVSCEIIGHVRSPYKERFGTPRQPPVTEQTLEDRALEASIELLPGRNFEQALKDLEGFDYIWVLAWLHLNEGWSPQVIPPRGPEVKRGLFATRAPHRPNPISLSALRLLGIEGR--VLKVRGIDLLDGTPVLDIKPYIPYSDAFPDARTGWLKGL 171
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BLAST of mRNA_E-siliculosus-1a_F_contig1274.1678.1 vs. uniprot
Match: A0A6N6JQK0_9BACT (tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO n=3 Tax=Bacteria TaxID=2 RepID=A0A6N6JQK0_9BACT)

HSP 1 Score: 189 bits (480), Expect = 4.830e-52
Identity = 91/162 (56.17%), Postives = 117/162 (72.22%), Query Frame = 3 
Query: 1554 KMEISYRPVAV--VRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSD 2033
            K   ++  VA+  VRSPY+ERFGTPRQP VTA  L   A + +I  L    +E+ALQDL GF+ IWVL  +HLN GWNP+V PPR P+ ++GLF+TR+PHRPN I LS+LR+ RV+    V++V G+DLLDGTPVLD+KPY+ Y DAF   +AGWL+ L  D
Sbjct:   15 KAPATFTCVAIGHVRSPYKERFGTPRQPVVTAQTLEDRALDARIELLPAMNFEQALQDLEGFEYIWVLAWLHLNSGWNPQVMPPRGPKVKRGLFATRAPHRPNPIGLSALRLIRVEGR--VLHVRGIDLLDGTPVLDVKPYVPYSDAFAAARAGWLEGLAQD 174
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1678.1 vs. uniprot
Match: A0A7S3A0C0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A0C0_9RHOD)

HSP 1 Score: 191 bits (485), Expect = 5.970e-52
Identity = 86/154 (55.84%), Postives = 111/154 (72.08%), Query Frame = 3 
Query: 1563 ISYRPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDAL 2024
            +S + + VVRSPY+ERFGTPRQ  V    +    Q+G+I  +    YE AL+ L GFD  WV+  MHLN GWNP V PPR P  ++G+F+TR+PHRPN I+LS+L++ RVD  N +++V GLDLLDGTP+LDIKPY+ Y DAFPN  AGWLD +
Sbjct:   48 MSVQAIGVVRSPYKERFGTPRQATVWEQSIGNAPQDGEIHLIGDPRYEHALRGLDGFDYCWVICWMHLNTGWNPLVTPPRGPRTKQGIFATRAPHRPNPISLSALKITRVDYKNRIVHVKGLDLLDGTPILDIKPYVPYADAFPNAAAGWLDNI 201
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBB4_9PHAE0.000e+095.01TsaA-like domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YNQ9_9STRA7.130e-6563.98TsaA-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7S3XP01_HETAK1.460e-5757.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4F040_VITBC2.860e-5352.91TsaA-like domain-containing protein n=2 Tax=Vitrel... [more]
A0A7S1WEL1_ALECA3.280e-5352.44Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
R1DL83_EMIHU7.140e-5353.89TsaA-like domain-containing protein n=1 Tax=Emilia... [more]
UPI001AD54E4C9.660e-5358.55tRNA (Adenine(37)-N6)-methyltransferase n=2 Tax=Pl... [more]
A0A7V8E2B3_9BACT3.500e-5253.49TsaA-like domain-containing protein n=1 Tax=Planct... [more]
A0A6N6JQK0_9BACT4.830e-5256.17tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyl... [more]
A0A7S3A0C0_9RHOD5.970e-5255.84Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1274contigE-siliculosus-1a_F_contig1274:10556..13698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1926
Model size2520
Exons3
Ec32 orthologEc-12_006540.1
Ec32 ortholog descriptionTsaA-like domain
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.V
EggNOG OGsCOG1720@1,KOG2942@2759
EggNOG free text desc.tRNA (adenine-N6-)-methyltransferase activity
Seed eggNOG ortholog2880.D7FI01
Seed ortholog evalue0.0
Seed ortholog score1159.4
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1274.1678.1prot_E-siliculosus-1a_F_contig1274.1678.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1274 10905..13453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927796.055166-UTR-E-siliculosus-1a_F_contig1274:10555..109041622927796.055166-UTR-E-siliculosus-1a_F_contig1274:10555..10904Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1274 10556..10904 -
1696318682.8302298-UTR-E-siliculosus-1a_F_contig1274:10555..109041696318682.8302298-UTR-E-siliculosus-1a_F_contig1274:10555..10904Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1274 10556..10904 -
1622927796.1170902-UTR-E-siliculosus-1a_F_contig1274:13453..136981622927796.1170902-UTR-E-siliculosus-1a_F_contig1274:13453..13698Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1274 13454..13698 -
1696318682.8617375-UTR-E-siliculosus-1a_F_contig1274:13453..136981696318682.8617375-UTR-E-siliculosus-1a_F_contig1274:13453..13698Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1274 13454..13698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927796.0707757-CDS-E-siliculosus-1a_F_contig1274:10904..111341622927796.0707757-CDS-E-siliculosus-1a_F_contig1274:10904..11134Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 10905..11134 -
1696318682.8392742-CDS-E-siliculosus-1a_F_contig1274:10904..111341696318682.8392742-CDS-E-siliculosus-1a_F_contig1274:10904..11134Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 10905..11134 -
1622927796.0849023-CDS-E-siliculosus-1a_F_contig1274:11475..117121622927796.0849023-CDS-E-siliculosus-1a_F_contig1274:11475..11712Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 11476..11712 -
1696318682.8467987-CDS-E-siliculosus-1a_F_contig1274:11475..117121696318682.8467987-CDS-E-siliculosus-1a_F_contig1274:11475..11712Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 11476..11712 -
1622927796.1056263-CDS-E-siliculosus-1a_F_contig1274:11994..134531622927796.1056263-CDS-E-siliculosus-1a_F_contig1274:11994..13453Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 11995..13453 -
1696318682.8540974-CDS-E-siliculosus-1a_F_contig1274:11994..134531696318682.8540974-CDS-E-siliculosus-1a_F_contig1274:11994..13453Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 11995..13453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1274.1678.1

>prot_E-siliculosus-1a_F_contig1274.1678.1 ID=prot_E-siliculosus-1a_F_contig1274.1678.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1678.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=642bp
MGPTVAAVATNILALSSALVVGFAVGRFAGGGGNKETQQHPCSVRGAKRR
ARIKKSEDNSRARAAGLASPPSEEEKRSNQVLLSSRRTRSRKKKLAPRCL
ALDAWTRVARSYIKSIGEGDYESLLLLPRACFIVAGRFVPYAECRDQLVS
LGQARAATAGVEQLRVLYVSCSWASAGGGEGTGWAVQDFETTRAYLQRNP
DLSFVYVGRSCVAGSSSSTRHVRSTQLRHVTPALLRSDAVLVLPRLAEHP
GGEEGSGSMATRYTDFECSVRGSRSRMVLAIAAVGQAKVSVAFRAGSYPE
SVVELELGKSNVRATAKQAADALRAAAAKRPQKSTAAVVKEACENWLAAD
LNPLSALEQARTVVEEAQKSDDGEALENIQSMRPAPSFAANARAALGDEF
VGAERELALSMLLFAVLCSQPKERATYTDNFAEDVGKMEISYRPVAVVRS
PYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIW
VLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVD
AANGVIYVHGLDLLDGTPVLDIKPYIGYCDAFPNVKAGWLDALGSDHEGQ
GDFLPKFSVGATLVHTNAGSQRSPTRTASRKPPAADQVEAS*
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mRNA from alignment at E-siliculosus-1a_F_contig1274:10556..13698-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1274.1678.1 ID=mRNA_E-siliculosus-1a_F_contig1274.1678.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1678.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3143bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1274:10556..13698- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCGCAGCCTTGAAGCTCGAGGCTTGGCCACAACGCCACAACTCTGTTG
CGCACTTGAGACCTCGAATGCTCCTTTCTTCTGCGCAACGGCTCTACCTT
TTGTGCTTCCAGCGTATGCATCAGCGTGTGTACGCTGATAACCTGAAGTT
CAACACTCCACGCTGACGGCTGCGCAGTTGTAAGAAGTGGATCCTTCGGA
CGGCTACAACAGCACCGCAGGACATATCTTCGTTGGCGACGGACGATGGG
CCCAACCGTTGCCGCCGTTGCGACCAACATATTAGCACTGTCTTCGGCCT
TGGTGGTTGGATTTGCGGTTGGGAGGTTCGCAGGTGGTGGGGGTAACAAG
GAAACCCAACAACACCCATGCAGCGTCAGGGGGGCCAAGCGTCGAGCACG
GATAAAGAAGAGCGAGGACAACTCTAGGGCCAGAGCGGCCGGCCTCGCGT
CGCCGCCATCGGAGGAAGAGAAACGAAGCAACCAAGTACTACTGTCGTCA
AGAAGGACCCGTAGCCGCAAGAAAAAACTGGCGCCTCGGTGCCTCGCACT
CGACGCCTGGACGAGGGTTGCCCGATCCTACATCAAGAGTATCGGCGAGG
GAGACTACGAGTCGCTTCTTCTCCTCCCACGAGCATGTTTCATCGTCGCC
GGGCGGTTTGTGCCTTACGCCGAATGCCGCGACCAACTTGTCTCTCTAGG
CCAGGCGAGGGCGGCTACTGCCGGAGTCGAGCAGCTGCGTGTGCTCTACG
TTAGCTGCTCGTGGGCAAGCGCTGGGGGCGGGGAAGGAACAGGCTGGGCG
GTGCAGGACTTCGAGACCACGCGCGCCTATCTTCAGCGCAACCCGGACCT
CTCGTTTGTCTACGTGGGTAGGTCTTGCGTCGCGGGCAGCTCTTCTTCTA
CCAGACACGTAAGATCAACGCAGCTGCGCCATGTTACTCCAGCCCTCCTT
CGGTCGGATGCCGTGCTTGTGCTTCCTCGCCTGGCGGAGCACCCCGGTGG
TGAGGAAGGCTCTGGATCTATGGCCACAAGGTACACTGACTTTGAGTGTT
CCGTCCGCGGTTCTCGGTCTCGGATGGTGCTTGCCATTGCTGCCGTCGGC
CAGGCGAAGGTGTCCGTCGCTTTCCGCGCGGGGTCATACCCTGAATCCGT
AGTTGAACTTGAGCTGGGGAAGAGCAACGTCAGGGCAACGGCGAAGCAAG
CTGCGGATGCACTGAGGGCTGCGGCGGCGAAGAGGCCACAGAAGAGCACA
GCGGCGGTAGTGAAGGAAGCATGTGAAAACTGGTTGGCCGCAGACCTGAA
CCCCCTCTCAGCTCTCGAGCAGGCCAGGACGGTAGTAGAAGAGGCTCAGA
AGTCGGACGATGGCGAAGCTCTGGAGAACATCCAAAGCATGCGACCAGCT
CCATCCTTTGCGGCGAACGCGCGCGCGGCTCTCGGTGATGAGTTCGTTGG
GGCAGAGCGCGAGCTTGCTCTCTCGATGCTCTTGTTTGCGGTGCTTTGTT
CGCAGCCTAAGGAACGCGCTACCTACACGGACAATTTCGCGGAAGACGTC
GGCAAGATGGAAATATCATACCGCCCCGTGGCGGTGGTTAGGAGTCCGTA
CCGGGAGAGGTTTGGGACTCCGCGCCAACCGCAGGTGACCGCCTCTGTGC
TACATGGGGGCGCTCAGGAAGGGCAGATCGTGTTTCTCCGAGGACGCGGT
TATGGTGAGCACCCTGGCGATCCAAGAAAGTCTTTGTAAAGTTCCTCGTC
TGTCTGTATTTACCCTCTTGCAAGATTAAACAGCTGCTAGCGGTCGGTTG
GGTGGTTTGCACGCCTGCACACTGCACCGCCTTTTCATTTGTTGGCACAT
GGCCATCTTCGAGAGGTAGACCCAACGTCTTTTGCTTCGTGGAGACACAT
CCTGCTTCCGTCTGGGAATCATGACACGCATTTTAAACAACTGCCCACGC
GTCCTCTCTTATGTATGTGGGACGTTACACGGACAGAGGAAGCCCTGCAA
GATTTAAGCGGTTTCGACATGATCTGGGTACTAACCCACATGCACCTGAA
CAAAGGATGGAATCCCAAGGTCCGCCCCCCTCGGTTACCAGAGGAAAGAA
AGGGCCTCTTCTCCACGCGAAGCCCACACAGACCGAACGCGATTGCGTTG
TCGTCTCTACGCGTGGGGCGGGTAGATGCCGCTAACGGTGTGATCTACGT
GCACGGCCTGGACCTGCTCGACGGTAGGCGTGAACAAAGAGAAAAAAATG
GAACCAATGATATAGTAGTAAACAAGCGCATACGTACCTGACGTGCACCA
CAACTTGTGAGCTCTACATGGCTCTCAGCCGTTGATGGTGGTGTTTTGCT
AGACTCTTGCAACTGAACAGCCCACAAAGCAGCACGTGCGTTTGTTACCG
CTGGTGAAAACCGTCGCAAGAGAGGATCGTTGGATTTTGTCAAATGCTGC
GCTCCGACGAGTGCAACATTGGTGTCGTGATTGTTGTTGGTGGTTCTATT
TAGTGCGAGAGTGAGATAATTGTGAGACGTTGTCAATATCCTGTTGCTAC
CGCTTCCTGGACAGGTACCCCGGTGCTGGACATCAAACCGTACATCGGCT
ACTGCGACGCCTTTCCCAACGTGAAAGCCGGGTGGCTGGATGCTCTTGGC
TCGGATCACGAAGGGCAGGGGGACTTCTTGCCGAAGTTCAGTGTCGGCGC
TACGTTGGTTCACACCAATGCTGGCTCTCAACGTTCTCCCACCAGGACAG
CATCGAGGAAACCACCCGCGGCCGACCAAGTGGAGGCCTCGTAGAGACAA
TGTTGCTCGATGGTAGTGGGTGGTGGAACGAAAAGAGTTGCTCAAACCAA
TGTAGACAGGGAGAGGAACCCGTTTGTGTGACCACGGGTTGCAATGAAAC
GGCACAAGTGTTGTGAGCGCTGACTTGAATTGTGAAGACAATACAAATTA
GAGCAAAAAACGTTTTATGCCACGTCGCTGGTGTTTGAACGTTGCGAGTA
CCGGGACGAAATCCCAACGAGAATCCTGAGAGAGGCTTGCTGCGTGATTT
GTTTGTTCCTCTGGCGACATCATGCCGTGCACACAATAATAGTGGAGTCC
TCGTATGAAACGCGGGAAGCGTTTTCCCCTATGATTTCTTGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1274:10556..13698-

>mRNA_E-siliculosus-1a_F_contig1274.1678.1 ID=mRNA_E-siliculosus-1a_F_contig1274.1678.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1678.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3852bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1274:10556..13698- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCCCAACCGTTGCCGCCGTTGCGACCAACATATTAGCACTGTCTTC
GGCCTTGGTGGTTGGATTTGCGGTTGGGAGGTTCGCAGGTGGTGGGGGTA
ACAAGGAAACCCAACAACACCCATGCAGCGTCAGGGGGGCCAAGCGTCGA
GCACGGATAAAGAAGAGCGAGGACAACTCTAGGGCCAGAGCGGCCGGCCT
CGCGTCGCCGCCATCGGAGGAAGAGAAACGAAGCAACCAAGTACTACTGT
CGTCAAGAAGGACCCGTAGCCGCAAGAAAAAACTGGCGCCTCGGTGCCTC
GCACTCGACGCCTGGACGAGGGTTGCCCGATCCTACATCAAGAGTATCGG
CGAGGGAGACTACGAGTCGCTTCTTCTCCTCCCACGAGCATGTTTCATCG
TCGCCGGGCGGTTTGTGCCTTACGCCGAATGCCGCGACCAACTTGTCTCT
CTAGGCCAGGCGAGGGCGGCTACTGCCGGAGTCGAGCAGCTGCGTGTGCT
CTACGTTAGCTGCTCGTGGGCAAGCGCTGGGGGCGGGGAAGGAACAGGCT
GGGCGGTGCAGGACTTCGAGACCACGCGCGCCTATCTTCAGCGCAACCCG
GACCTCTCGTTTGTCTACGTGGGTAGGTCTTGCGTCGCGGGCAGCTCTTC
TTCTACCAGACACGTAAGATCAACGCAGCTGCGCCATGTTACTCCAGCCC
TCCTTCGGTCGGATGCCGTGCTTGTGCTTCCTCGCCTGGCGGAGCACCCC
GGTGGTGAGGAAGGCTCTGGATCTATGGCCACAAGGTACACTGACTTTGA
GTGTTCCGTCCGCGGTTCTCGGTCTCGGATGGTGCTTGCCATTGCTGCCG
TCGGCCAGGCGAAGGTGTCCGTCGCTTTCCGCGCGGGGTCATACCCTGAA
TCCGTAGTTGAACTTGAGCTGGGGAAGAGCAACGTCAGGGCAACGGCGAA
GCAAGCTGCGGATGCACTGAGGGCTGCGGCGGCGAAGAGGCCACAGAAGA
GCACAGCGGCGGTAGTGAAGGAAGCATGTGAAAACTGGTTGGCCGCAGAC
CTGAACCCCCTCTCAGCTCTCGAGCAGGCCAGGACGGTAGTAGAAGAGGC
TCAGAAGTCGGACGATGGCGAAGCTCTGGAGAACATCCAAAGCATGCGAC
CAGCTCCATCCTTTGCGGCGAACGCGCGCGCGGCTCTCGGTGATGAGTTC
GTTGGGGCAGAGCGCGAGCTTGCTCTCTCGATGCTCTTGTTTGCGGTGCT
TTGTTCGCAGCCTAAGGAACGCGCTACCTACACGGACAATTTCGCGGAAG
ACGTCGGCAAGATGGAAATATCATACCGCCCCGTGGCGGTGGTTAGGAGT
CCGTACCGGGAGAGGTTTGGGACTCCGCGCCAACCGCAGGTGACCGCCTC
TGTGCTACATGGGGGCGCTCAGGAAGGGCAGATCGTGTTTCTCCGAGGAC
GCGGTTATGATGGGCCCAACCGTTGCCGCCGTTGCGACCAACATATTAGC
ACTGTCTTCGGCCTTGGTGGTTGGATTTGCGGTTGGGAGGTTCGCAGGTG
GTGGGGGTAACAAGGAAACCCAACAACACCCATGCAGCGTCAGGGGGGCC
AAGCGTCGAGCACGGATAAAGAAGAGCGAGGACAACTCTAGGGCCAGAGC
GGCCGGCCTCGCGTCGCCGCCATCGGAGGAAGAGAAACGAAGCAACCAAG
TACTACTGTCGTCAAGAAGGACCCGTAGCCGCAAGAAAAAACTGGCGCCT
CGGTGCCTCGCACTCGACGCCTGGACGAGGGTTGCCCGATCCTACATCAA
GAGTATCGGCGAGGGAGACTACGAGTCGCTTCTTCTCCTCCCACGAGCAT
GTTTCATCGTCGCCGGGCGGTTTGTGCCTTACGCCGAATGCCGCGACCAA
CTTGTCTCTCTAGGCCAGGCGAGGGCGGCTACTGCCGGAGTCGAGCAGCT
GCGTGTGCTCTACGTTAGCTGCTCGTGGGCAAGCGCTGGGGGCGGGGAAG
GAACAGGCTGGGCGGTGCAGGACTTCGAGACCACGCGCGCCTATCTTCAG
CGCAACCCGGACCTCTCGTTTGTCTACGTGGGTAGGTCTTGCGTCGCGGG
CAGCTCTTCTTCTACCAGACACGTAAGATCAACGCAGCTGCGCCATGTTA
CTCCAGCCCTCCTTCGGTCGGATGCCGTGCTTGTGCTTCCTCGCCTGGCG
GAGCACCCCGGTGGTGAGGAAGGCTCTGGATCTATGGCCACAAGGTACAC
TGACTTTGAGTGTTCCGTCCGCGGTTCTCGGTCTCGGATGGTGCTTGCCA
TTGCTGCCGTCGGCCAGGCGAAGGTGTCCGTCGCTTTCCGCGCGGGGTCA
TACCCTGAATCCGTAGTTGAACTTGAGCTGGGGAAGAGCAACGTCAGGGC
AACGGCGAAGCAAGCTGCGGATGCACTGAGGGCTGCGGCGGCGAAGAGGC
CACAGAAGAGCACAGCGGCGGTAGTGAAGGAAGCATGTGAAAACTGGTTG
GCCGCAGACCTGAACCCCCTCTCAGCTCTCGAGCAGGCCAGGACGGTAGT
AGAAGAGGCTCAGAAGTCGGACGATGGCGAAGCTCTGGAGAACATCCAAA
GCATGCGACCAGCTCCATCCTTTGCGGCGAACGCGCGCGCGGCTCTCGGT
GATGAGTTCGTTGGGGCAGAGCGCGAGCTTGCTCTCTCGATGCTCTTGTT
TGCGGTGCTTTGTTCGCAGCCTAAGGAACGCGCTACCTACACGGACAATT
TCGCGGAAGACGTCGGCAAGATGGAAATATCATACCGCCCCGTGGCGGTG
GTTAGGAGTCCGTACCGGGAGAGGTTTGGGACTCCGCGCCAACCGCAGGT
GACCGCCTCTGTGCTACATGGGGGCGCTCAGGAAGGGCAGATCGTGTTTC
TCCGAGGACGCGGTTATGAGGAAGCCCTGCAAGATTTAAGCGGTTTCGAC
ATGATCTGGGTACTAACCCACATGCACCTGAACAAAGGATGGAATCCCAA
GGTCCGCCCCCCTCGGTTACCAGAGGAAAGAAAGGGCCTCTTCTCCACGC
GAAGCCCACACAGACCGAACGCGATTGCGTTGTCGTCTCTACGCGTGGGG
CGGGTAGATGCCGCTAACGGTGTGATCTACGTGCACGGCCTGGACCTGCT
CGACGAGGAAGCCCTGCAAGATTTAAGCGGTTTCGACATGATCTGGGTAC
TAACCCACATGCACCTGAACAAAGGATGGAATCCCAAGGTCCGCCCCCCT
CGGTTACCAGAGGAAAGAAAGGGCCTCTTCTCCACGCGAAGCCCACACAG
ACCGAACGCGATTGCGTTGTCGTCTCTACGCGTGGGGCGGGTAGATGCCG
CTAACGGTGTGATCTACGTGCACGGCCTGGACCTGCTCGACGGTACCCCG
GTGCTGGACATCAAACCGTACATCGGCTACTGCGACGCCTTTCCCAACGT
GAAAGCCGGGTGGCTGGATGCTCTTGGCTCGGATCACGAAGGGCAGGGGG
ACTTCTTGCCGAAGTTCAGTGTCGGCGCTACGTTGGTTCACACCAATGCT
GGCTCTCAACGTTCTCCCACCAGGACAGCATCGAGGAAACCACCCGCGGC
CGACCAAGTGGAGGCCTCGTAGGTACCCCGGTGCTGGACATCAAACCGTA
CATCGGCTACTGCGACGCCTTTCCCAACGTGAAAGCCGGGTGGCTGGATG
CTCTTGGCTCGGATCACGAAGGGCAGGGGGACTTCTTGCCGAAGTTCAGT
GTCGGCGCTACGTTGGTTCACACCAATGCTGGCTCTCAACGTTCTCCCAC
CAGGACAGCATCGAGGAAACCACCCGCGGCCGACCAAGTGGAGGCCTCGT
AG
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