mRNA_E-siliculosus-1a_F_contig1274.1677.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1274.1677.1
Unique NamemRNA_E-siliculosus-1a_F_contig1274.1677.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1274.1677.1 vs. uniprot
Match: D7FHY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY0_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 2.020e-21
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 1 
Query:    1 MAFRRHCSTVTVSKRLAARRTLKLNGYVVHDGGDPIYLEVG----PVRVVHDSGG-ETESGNVTAGFSQDKHVFVFALKD 225
            MAFRRHCS+V  SKRLAAR  L LNGYVVHD GDPIYL++     P RV+++S   +     VTAGFS++KHVF+FALKD
Sbjct:    1 MAFRRHCSSV--SKRLAARLLLGLNGYVVHDSGDPIYLDISTFDFPTRVMNNSDKPKVFVCTVTAGFSREKHVFLFALKD 78
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BLAST of mRNA_E-siliculosus-1a_F_contig1274.1677.1 vs. uniprot
Match: D7FHZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 8.790e-18
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 MAFRRHCSTVTVSKRLAARRTLKLNGYVVHDGGDPIYLEVG----PVRVVHDSGG-ETESGNVTAGFSQDKHVFVFALK 222
            MAFRRHCS V  SKRLAAR  L LNGYVVHDGGDPIYL++     P RV+++S         VTAGFS +K+VFVF LK
Sbjct:  141 MAFRRHCSPV--SKRLAARLLLGLNGYVVHDGGDPIYLDISTFGFPARVMNNSDKPHVFVCTVTAGFSLEKYVFVFPLK 217
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1274.1677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHY0_ECTSI2.020e-2162.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHZ9_ECTSI8.790e-1862.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1274contigE-siliculosus-1a_F_contig1274:6250..8154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size225
Model size225
Exons3
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1274.1677.1prot_E-siliculosus-1a_F_contig1274.1677.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1274 6250..8154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.9887743-CDS-E-siliculosus-1a_F_contig1274:6249..63241622927795.9887743-CDS-E-siliculosus-1a_F_contig1274:6249..6324Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 6250..6324 +
1696318682.8076863-CDS-E-siliculosus-1a_F_contig1274:6249..63241696318682.8076863-CDS-E-siliculosus-1a_F_contig1274:6249..6324Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 6250..6324 +
1622927796.0031707-CDS-E-siliculosus-1a_F_contig1274:7101..71971622927796.0031707-CDS-E-siliculosus-1a_F_contig1274:7101..7197Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 7102..7197 +
1696318682.8152757-CDS-E-siliculosus-1a_F_contig1274:7101..71971696318682.8152757-CDS-E-siliculosus-1a_F_contig1274:7101..7197Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 7102..7197 +
1622927796.0143921-CDS-E-siliculosus-1a_F_contig1274:8100..81541622927796.0143921-CDS-E-siliculosus-1a_F_contig1274:8100..8154Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 8101..8154 +
1696318682.8225145-CDS-E-siliculosus-1a_F_contig1274:8100..81541696318682.8225145-CDS-E-siliculosus-1a_F_contig1274:8100..8154Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1274 8101..8154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1274.1677.1

>prot_E-siliculosus-1a_F_contig1274.1677.1 ID=prot_E-siliculosus-1a_F_contig1274.1677.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1677.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=75bp
MAFRRHCSTVTVSKRLAARRTLKLNGYVVHDGGDPIYLEVGPVRVVHDSG
GETESGNVTAGFSQDKHVFVFALKD
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mRNA from alignment at E-siliculosus-1a_F_contig1274:6250..8154+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1274.1677.1 ID=mRNA_E-siliculosus-1a_F_contig1274.1677.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1677.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1905bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1274:6250..8154+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCTTCCGGAGGCATTGCTCCACGGTCACGGTCTCGAAGCGGTTGGC
GGCGCGCCGGACCTTGAAATTGAACGTGAGCTCCGCGCTCACGTTCAATT
TCGAGGTCCGCGCTCACGTTCAATTTCAAGGTCCGGCGCGCCGCCAACCG
CTTCGAGACCGTGACCGTGGAGCAATGCCTCCGGAAGGCCATGACGACTT
CTTGCTCTGCGAAAGGCTGGGTGGCGAACACGCCAACCCCCCGCTGTGAT
TTTCGACGTTTCCACAAAACTACGAGCGGCACGCGCTAGAGTTGTCTCTC
CAGCGCTTGAAGTCTGCATATACATGTGGCACAAAGAGATGGAAAGTGGC
ATAGCGTGTTTTGCGTGCCCGGGCGCTTCGTTTTGCGAGTTTCTGTATCA
TCGACCCACCTGTAGTCTGCCTTGTACTTGTGCACGTCCATGGCTTTCGC
AATTGTTTGGAAGAATGTGCGTGGTCCACGTACACCCTCGGCTGTGCCTC
GACCGCGATTCCCGTGGTTTCGAAAAGATGTGCATAGAAAACGAGCAATC
GTGGTACCCCCCCTATGTATTCAAGCACTCTCAGTCGCTGGGTTTAGCAG
GATTCCCTGCCATTTTGTTTCGCTTTGCTGTCAAGCACATACCACGTCGC
CAGCAGCAGCAGCAGCAGCAGCAGCAGCGACCATACCCAACGCAAAGTGT
GGTGGACACGGGTTGGTATGATCGTGTGCCGTCAAATCGGTTCGGTTGGG
GTACGTACGCCAATTCGTCAGCGAGCCCCCCATCCCCTCTCCGCTCCCGT
CAACACCACCCTTTCCCTTCCCTGAACTCCCCGGGTGTCATCGCTGCCGC
AGGGATATGTCGTCCACGATGGGGGAGACCCCATCTATCTGGAGGTTGGG
CCTGTCCGAGTTGTTCATGACTCGGGCGGGGAAACCGAAAGCGGAAACGT
CTGGTGTACGCTACAGTGTACTCACCGTGAAGATGTTCACATTCGGCCTG
TCCGAGTTGTTCATGACTCGGACAGGCCGAATGTGCATATCCGACGGTGA
GCAGCGTAGATTGTTTCCAGCGGTTGGTTATAGTAGGTGTGATGGGTGAT
ACATTGTTGAGTGTGCTGAGAGCACTTTCATGTAAACATGGTTGAATTTG
CACTTTGCTCAGTTCGTGTGTCTCTGTACAGGCGGGCGGTGAGCGCGCCT
AGGAAGGCTGACGTTTGTTTTTTCCTGTTGTGGAGAGAGAAGGGGGTTCC
TTTCACTGCCCCTACAGAGCACCCCTGCATGAGCTTTATCTTTATCTCTA
CTTTTTTGTTGGAGTCAAACGTTGGTCCGGTTTTCTCAAGTTCCCTAAAG
CTCGGCTGTATTTTTCTTGCCCGAATTTCGAGGAAGGTCCCACCGTGCAA
AGACATGTTTTACCTGGCTAGGCAGTGCTTCTTCTCCTCCATACAGACAT
GGACATGTGCACAGCAGCTTCTCTACACCGTGATTGCACGGATCAGCCCG
CAAGCACGGTCGATGTCAATGTCTCCCAACAAGAATAGTTTATATGTAGA
GTATGTGTTTTGTTGTGCGTATTGTTTAATTTTCGGTTTTGGGGACGCCA
TATCACACGCACGGCGCTCTTCTCGGGAAGAGTGAATATGAGGTAGCATA
GGGTGCAAGAAACTACGGAACGCAACCACACGATCCCTTTGTTCGGCAAA
CGAGACTCAACAGTAACAGCAACCCCATGGATGAGTCGGTCCTTATTTAT
GGCAACATGGAGCAGCTTGTTGACGCGACCCTCCCCCTTCGGCTTGTACG
TGTACCCTACCCTACCCGAACGTTTTCCTTGTCACTCCTTGTTTCACGCA
GGTCACCGCGGGTTTCTCTCAAGACAAGCACGTGTTTGTTTTCGCTCTGA
AGGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1274:6250..8154+

>mRNA_E-siliculosus-1a_F_contig1274.1677.1 ID=mRNA_E-siliculosus-1a_F_contig1274.1677.1|Name=mRNA_E-siliculosus-1a_F_contig1274.1677.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=450bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1274:6250..8154+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCTTCCGGAGGCATTGCTCCACGGTCACGGTCTCGAAGCGGTTGGC
GGCGCGCCGGACCTTGAAATTGAACATGGCCTTCCGGAGGCATTGCTCCA
CGGTCACGGTCTCGAAGCGGTTGGCGGCGCGCCGGACCTTGAAATTGAAC
GGATATGTCGTCCACGATGGGGGAGACCCCATCTATCTGGAGGTTGGGCC
TGTCCGAGTTGTTCATGACTCGGGCGGGGAAACCGAAAGCGGAAACGGAT
ATGTCGTCCACGATGGGGGAGACCCCATCTATCTGGAGGTTGGGCCTGTC
CGAGTTGTTCATGACTCGGGCGGGGAAACCGAAAGCGGAAACGTCACCGC
GGGTTTCTCTCAAGACAAGCACGTGTTTGTTTTCGCTCTGAAGGACGTCA
CCGCGGGTTTCTCTCAAGACAAGCACGTGTTTGTTTTCGCTCTGAAGGAC
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