mRNA_E-siliculosus-1a_F_contig1273.1675.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1675.1 vs. uniprot
Match: D8LHS3_ECTSI (Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS3_ECTSI) HSP 1 Score: 752 bits (1942), Expect = 9.860e-267 Identity = 390/423 (92.20%), Postives = 398/423 (94.09%), Query Frame = 1
Query: 4 QESLMEKTGWEGIGTGYEDTPVGFYRDTNLKPLNWRDAMVSMKPGSGTLGLDPEFDDNSGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEEKLKAEIASFPRRLPRRVRRYYHDKVVWVTGADHGLGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDATLEGLTRLDRVMIMPLDVRDTFILDHATKKAEDMLDRPVGMVFHCQGGGVIAGEWDEEEEEGG-----DLDVEEASEILRGAISLTKAVLPSMLDEQEGHLVVLGGDYSFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTVLHHSGCTGSASAQQTPTSFGGDPAASRAAIPTATAPAGRAQAPIDTATAARKVLVAVSRAKTEVSLRSRSLPGLAGLEARVRTLPR 1257
QESLMEKTGWEG GTGYEDTPVGFYRDTNLKPLNWRDAMVSMKPGSGTLGLDP FDD SGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEEKLKAEIASFPRRLPRRVRRYYHDKV WVTGADHGLGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDA LEGLTRLDRVMIMPLDVRDTFILDHAT+KAEDMLDRPVGMVFHCQGGGV+AGEWDEE+E DLD+E AS LRGAISLTKAVLPSMLDEQEGHLVVLGGD F SREETSSPAGVVSSKHAARGYFDRLR EVSRDGVK+TT+LHHSGCTGSASA QTP+SFGGDPAASRAAI TATAPAGRAQAPIDTATAARK LVAVSRA+TEVSLR RSLPGL GLEARVRTLPR
Sbjct: 176 QESLMEKTGWEGTGTGYEDTPVGFYRDTNLKPLNWRDAMVSMKPGSGTLGLDPHFDDTSGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEEKLKAEIASFPRRLPRRVRRYYHDKVAWVTGADHGLGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDAILEGLTRLDRVMIMPLDVRDTFILDHATRKAEDMLDRPVGMVFHCQGGGVVAGEWDEEDEXXXXXXXXDLDLE-ASGNLRGAISLTKAVLPSMLDEQEGHLVVLGGDDFFTSREETSSPAGVVSSKHAARGYFDRLRREVSRDGVKVTTLLHHSGCTGSASALQTPSSFGGDPAASRAAIRTATAPAGRAQAPIDTATAARKALVAVSRAETEVSLRRRSLPGLTGLEARVRTLPR 597
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1675.1 vs. uniprot
Match: A0A6H5JSY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSY9_9PHAE) HSP 1 Score: 698 bits (1802), Expect = 1.650e-246 Identity = 367/420 (87.38%), Postives = 373/420 (88.81%), Query Frame = 1
Query: 4 QESLMEKTGWEGIGTGYEDTPVGFYRDTNLKPLNWRDAMVSMKPGSGTLGLDPEFDDNSGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEEKLKAEIASFPRRLPRRVRRYYHDKVVWVTGADHGLGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDATLEGLTRLDRVMIMPLDVRDTFILDHATKKAEDMLDRPVGMVFHCQGGGVIAGEWDEEEEEGGDLDVEEASEILRGAISLTKAVLPSMLDEQEGHLVVLGGDYSFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTVLHHSGCTGSASAQQTPTSFGGDPAASRAAIPTATAPAGRAQAP--IDTATAARKVLVAVSRAKTEVSLRSRSLPGLAGLEARVRTLPR 1257
QESLMEKTGWEGIGTGYEDTPVGFYRDTNLKPLNWRDAMVSMKPGSGTLGLDP+FDDNSGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEE VVWVTGADHG GEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDA LEGLTRLDRVMIMPLD RDTFILD A KAE+MLDRPVGMVFHCQGGGV+AGEWDEEEEE GDLDVE+AS LRGAI+LTKAVLPSMLDEQEGHLVVLGGD SFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTVLHHSGCTGS SAQQTP GGD AASRA IPTAT P GRAQAP IDTATAARKVLVAV+R K EVSLR RSLPGLAGLEARVRTLPR
Sbjct: 136 QESLMEKTGWEGIGTGYEDTPVGFYRDTNLKPLNWRDAMVSMKPGSGTLGLDPDFDDNSGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEE------------------------VVWVTGADHGFGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDAILEGLTRLDRVMIMPLDARDTFILDRAASKAEEMLDRPVGMVFHCQGGGVVAGEWDEEEEEEGDLDVEDASGNLRGAIALTKAVLPSMLDEQEGHLVVLGGDDSFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTVLHHSGCTGSTSAQQTPPKHGGDTAASRATIPTATEPTGRAQAPLRIDTATAARKVLVAVARGKAEVSLRRRSLPGLAGLEARVRTLPR 531
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1675.1 vs. uniprot
Match: D7FJU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU3_ECTSI) HSP 1 Score: 225 bits (574), Expect = 3.880e-67 Identity = 103/110 (93.64%), Postives = 104/110 (94.55%), Query Frame = 1
Query: 4 QESLMEKTGWEGIGTGYEDTPVGFYRDTNLKPLNWRDAMVSMKPGSGTLGLDPEFDDNSGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEEKLKAE 333
QESLMEKTGWEG GTGYEDTPVGFYRDTNLKPLNWRDAMVSMKPGSGTLGLDP FDD SGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEE + E
Sbjct: 44 QESLMEKTGWEGTGTGYEDTPVGFYRDTNLKPLNWRDAMVSMKPGSGTLGLDPHFDDTSGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEEGFRLE 153
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1675.1 vs. uniprot
Match: UPI00140B2A9F (SDR family oxidoreductase n=1 Tax=Marinobacter salicampi TaxID=435907 RepID=UPI00140B2A9F) HSP 1 Score: 110 bits (276), Expect = 2.030e-23 Identity = 80/221 (36.20%), Postives = 114/221 (51.58%), Query Frame = 1
Query: 349 RRLPRRVRRYYHDKVVWVTGADHGLGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDATLEGLTRLDRVMIMPLDVRDTFILDHATKKAEDMLDRPVGMVFHCQGGGVIAGEWDEEEEEGGDLDVEEAS---EILRGAISLTKAVLPSMLDEQEGHLVVLGGDYSFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTVL 1002
RR P R + +VVW+TGA G+GE +A+ LA GA+++LS ELERV C+ A GLT +D VM++PLDV D + AT +LDR + G+ ++ DLDV + ++L G I+LTKAVLP ML GH+ V S A + + G ++KHA G+FD LR EV DG+K++T++
Sbjct: 8 RRKPNRASTEFKGQVVWITGASSGIGEALAVGLAAQGAKLVLSARRKAELERVAMRCLQA---------------GLTEVD-VMVLPLDVTDLEAMPEATNT---VLDRFSHIDLLVNNAGLSQRSLCKDT----DLDVYKKLLDVDVL-GQIALTKAVLPHMLQRHSGHISVTA---SVAGKVGVPNRTGYCAAKHAVMGFFDALRAEVEDDGIKVSTIV 201
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1675.1 vs. uniprot
Match: A0A399ZGI0_9CHLR (Short chain dehydrogenase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399ZGI0_9CHLR) HSP 1 Score: 104 bits (259), Expect = 2.550e-21 Identity = 74/212 (34.91%), Postives = 106/212 (50.00%), Query Frame = 1
Query: 379 YHDKVVWVTGADHGLGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDATLEGLTRLDRVMIMPLDVRDTFILDHATKKAEDM---LDRPVGMVFHCQGGGVIAGEWDEEEEEGGDLDVEEASEI-LRGAISLTKAVLPSMLDEQEGHLVVLGGDYSFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTVL 1002
+ +K++W+TGA G+GE +A GAR+ILS ELERV+ C+ D T RV I+PLD D + K+A + LD V Q G V+ E L ++ ++ GA++LTKAVLP ML+ + GH+VV+ S + A +SKHA +GYF+ LR EV+R GVK+T +L
Sbjct: 5 FQNKIIWLTGASSGIGEALAYEFCQRGARLILSARRAAELERVRAQCV------------DPT--------RVKILPLDAADLENIPEKGKQARALFGTLDILVNNAGIAQRGRVVETEM---------LALQRVFQVNFFGAVALTKAVLPEMLERRAGHIVVVS---SLTGKLPVPKHAAYCASKHALQGYFNSLRAEVARQGVKVTLLL 184
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1675.1 vs. uniprot
Match: A0A7C9BAL8_9BACT (SDR family oxidoreductase n=1 Tax=Cytophagaceae bacterium SJW1-29 TaxID=2654236 RepID=A0A7C9BAL8_9BACT) HSP 1 Score: 98.6 bits (244), Expect = 2.700e-19 Identity = 69/210 (32.86%), Postives = 108/210 (51.43%), Query Frame = 1
Query: 376 YYHDKVVWVTGADHGLGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDATLEGLTRLDRVMIMPLDVRDTFILDHATKKAEDMLDRPVGMVFHCQGGGVIAGEWDEEEEEGGDLDVEEASEILR--GAISLTKAVLPSMLDEQEGHLVVLGGDYSFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTV 999
Y++ KVVW+TGA G+GE +A+ LA GA ++LS +EELERV++ L +RVM++PLDV + A +KA +++ R + GV + + LDV + + ++LTKAVLP M+ +Q GH +V+ S A + T +G ++KHA G++D LR EV D +++T V
Sbjct: 4 YFNQKVVWITGASSGIGEALALELAKAGATLVLSARRVEELERVKQSTSLP-------------------AERVMVLPLDVTK---FELAAEKAAEIITRFGRIDVMVHNAGVSQRSYVRDTS----LDVYQRIMDVDFFSTVALTKAVLPYMISQQNGHFIVIS---SVAGKVGTPMRSGYNAAKHALHGFYDSLRAEVFDDNIRVTVV 184
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1675.1 vs. uniprot
Match: UPI001A94446E (SDR family oxidoreductase n=1 Tax=Fibrella sp. HMF5405 TaxID=2817061 RepID=UPI001A94446E) HSP 1 Score: 98.2 bits (243), Expect = 3.520e-19 Identity = 70/207 (33.82%), Postives = 108/207 (52.17%), Query Frame = 1
Query: 379 YHDKVVWVTGADHGLGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDATLEGLTRLDRVMIMPLDVRDTFILDHATKKAEDMLDRPVGMVFHCQGGGVIAGEWDEEEEEGGDLDVEEASEILRGAISLTKAVLPSMLDEQEGHLVVLGGDYSFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTV 999
+H KV W+TGA G+GE +AI LA GAR++LS ++EL+RV AT GL D+++I+PLDV D + ++ D+L R + + G+ + +E + E + GA++LT+A LP ML +++GH VV S + + +G +SKHA G+FD LR EV+ DG+ +T V
Sbjct: 3 FHHKVAWITGASSGIGEALAIELARQGARLVLSARRIDELQRV------------------ATATGL-EADQLLILPLDVTDEASIP---ERVNDVLIRFGKIDYVFLNAGISQRSFVQETNFAVYRRLMEVN--FFGAVALTQAALPVMLAQKKGHFVVTS---SVSGKIGVRQRSGYCASKHALHGFFDSLRAEVANDGLNVTIV 182
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1675.1 vs. uniprot
Match: A0A371QIB6_9BACT (SDR family oxidoreductase n=1 Tax=Rhodohalobacter sp. SW132 TaxID=2293433 RepID=A0A371QIB6_9BACT) HSP 1 Score: 97.1 bits (240), Expect = 8.600e-19 Identity = 68/209 (32.54%), Postives = 107/209 (51.20%), Query Frame = 1
Query: 376 YYHDKVVWVTGADHGLGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDATLEGLTRLDRVMIMPLDVRDTFILDHATKKAEDMLDRPVGMVFHCQGGGVIAGEWDEEEEEGGDLDVEEASEI-LRGAISLTKAVLPSMLDEQEGHLVVLGGDYSFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTV 999
YY +KVVW+TGA G+GE +A L GAR+ILS +ELERV++ C G + ++++PLD+ ++ + T +A+ G+ GG+ + E + + EI GAI+LTKAV+P+M++ GH+VV+ S + T + +SKHA G+FD LR EV +DG+ ++ V
Sbjct: 2 YYQNKVVWITGASSGIGEALAYALNKKGARLILSARREQELERVKKNC-----------------SG--NPEDILVLPLDLTESDLFSEKTAEAKTHFG---GVDILINNGGISQRAYALEADM---ASIRHLMEINFFGAIALTKAVVPAMIERGHGHVVVIS---SVMGKFGTRYRSAYAASKHALHGWFDCLRQEVQKDGIDVSIV 182
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1675.1 vs. uniprot
Match: A0A257ISP9_9BACT (Short chain dehydrogenase n=1 Tax=Cytophagaceae bacterium BCCC1 TaxID=2015573 RepID=A0A257ISP9_9BACT) HSP 1 Score: 95.5 bits (236), Expect = 2.960e-18 Identity = 70/211 (33.18%), Postives = 105/211 (49.76%), Query Frame = 1
Query: 385 DKVVWVTGADHGLGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDATLEGLTRLDRVMIMPLDVRDTFILDHATKKAEDMLDRPVGMVFHCQG----GGVIAGEWDEEEEEGGDLDV-EEASEI-LRGAISLTKAVLPSMLDEQEGHLVVLGGDYSFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTV 999
DKV+W+TGA G+GE A +A GA+++LS EELERV+ C GL D ++++PLDV + + R + ++F+ G GGV+ DL V ++ I L G ++LTKAVLP M+ + GH+VV S + + + +G +SKHA G+FD LR EV + VK+T +
Sbjct: 6 DKVIWITGASSGIGEATAYKMAKEGAKLVLSARRKEELERVKNAC------------------GLLEND-ILVLPLDVENFESFESLKDTVVAKFGR-IDILFNNAGISQRGGVLES----------DLSVFQKIININLMGVVALTKAVLPQMIKQNAGHIVVTS---SLSGKLGSPMRSGYCASKHALHGFFDALRAEVYENNVKVTMI 183
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1675.1 vs. uniprot
Match: UPI001D411783 (SDR family oxidoreductase n=1 Tax=Spirosoma utsteinense TaxID=2585773 RepID=UPI001D411783) HSP 1 Score: 94.4 bits (233), Expect = 9.380e-18 Identity = 69/211 (32.70%), Postives = 104/211 (49.29%), Query Frame = 1
Query: 379 YHDKVVWVTGADHGLGEQMAINLAVNGARVILSGTSLEELERVQRLCILAWMKAVDWELLDATLEGLTRLDRVMIMPLDVRDTFILDHATKKAEDMLDRPVGMVFHCQGGGVIAGEWDEEEEEGGDLDVEEASEILR----GAISLTKAVLPSMLDEQEGHLVVLGGDYSFASREETSSPAGVVSSKHAARGYFDRLRTEVSRDGVKITTV 999
+ V+W+TGA G+GE +A+ LA GAR++LS +EL+RV A L GL D V+++PLD+ DT L + R + +F Q G+ + + D D+ +++ G ++LTKAVLP ML + GH+VV S A + T +G +SKHA G+FD LR E G+++T V
Sbjct: 17 FSSSVIWITGASSGIGEAIALALASQGARLVLSARRADELQRV------------------ADLTGLPASD-VLVLPLDMTDTTGLAAHVETVRQRFGR-IDYIF--QNAGIT------QRSQVADTDLSVYRQLMDVNFFGVVALTKAVLPLMLAQGSGHIVVTS---SVAGKIGTKQRSGYCASKHALHGFFDALRAETHEAGLRVTIV 196 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1273.1675.1 >prot_E-siliculosus-1a_F_contig1273.1675.1 ID=prot_E-siliculosus-1a_F_contig1273.1675.1|Name=mRNA_E-siliculosus-1a_F_contig1273.1675.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=462bp MEKTGWEGIGTGYEDTPVGFYRDTNLKPLNWRDAMVSMKPGSGTLGLDPEback to top mRNA from alignment at E-siliculosus-1a_F_contig1273:27679..34119- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1273.1675.1 ID=mRNA_E-siliculosus-1a_F_contig1273.1675.1|Name=mRNA_E-siliculosus-1a_F_contig1273.1675.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6441bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1273:27679..34119- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1273:27679..34119- >mRNA_E-siliculosus-1a_F_contig1273.1675.1 ID=mRNA_E-siliculosus-1a_F_contig1273.1675.1|Name=mRNA_E-siliculosus-1a_F_contig1273.1675.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2772bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1273:27679..34119- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |