mRNA_E-siliculosus-1a_F_contig1273.1674.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1674.1 vs. uniprot
Match: D8LHS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS2_ECTSI) HSP 1 Score: 670 bits (1729), Expect = 4.860e-229 Identity = 416/617 (67.42%), Postives = 436/617 (70.66%), Query Frame = 1
Query: 118 MSRRTIPVVRMNYSLGGVGEETTTGSSDGEPHNDHVASRKSLPEGESLXXGKALDVVRRKKEALSRVQAAAESIATHSGPIQVALGAIAFYGHGSLWSKEVIECIRKIGRSVHELIDGVDALRKWSSERVRVAQEALGEKDHTSSAMKHGKASTKKHMNANCERTTYTSWFRSSKSKAEKIQEYQMKKQVRGFFEHDFRCAQAIDADVTTHSTSIISELRSIVCDGDDGVEASVAGLVAGVHSLKKLSRRAVRKAKHNLAEVQRSCRIAARSARQERSEFQLWANVEISSDESAGHESXXXXXXXXETIPAVSERGPKRARSNSPDSSAPGGDSKKQRKGEGADVSAEASHMKKAQTTTEEGVXXXXXXXXXXXXXXXXXXVDGVLADAPFQFPFPVAAEKPAVKSERVQDGASSKVPLAKNEDGNVSTGASHIKKAKATTDEGVEEGQDEETGKEQVKTEVKVDGVLVDASFQFPFPVAAEKPAVKSECVQDGASSKVPHAKNEDGNVSAGASHIKKAKTTTEEGVEEEQDRETGKEQVKTEVKVDGVLVDAPFQFPFPVVAEKPEVKSERVQDGASSKVPHAKNEEGHVSAGASHIKAKTILRARRGGGRAGGTR 1968
M+RRT+PVV++NYSL VVRRKKEALSR QAAAESI+THSGPIQVALGAIAFYGHGSLWSKEVIECIR IGRSVHELID VDALRK SSERVRVAQEALGEK+HTSSA+K ASTKKHMNANCERTTY SW SKSKAE IQEYQMKKQVRGFFEHD RCAQAIDADVTT STSIISEL IVCDGDD +EA VAGLV GV SLKKLSRR VRKAK NLAE Q SC IAARSA++ERSEFQ WA+VEISSDESAG E XXXXXX ETIPAV +RGPKRARSNSPDSSAPGGD KKQRKGEGADVSAEASHMKKA+ TTEEG EEGQD ETGKEQVKTEVK DGVL DA FQFPFPVAAEKPAVKSECVQDG SSKVP+ K E GNVSAGASH+K AK TTE+GV E QD TGKEQ+KTEVKVDGVL APFQFPFPV AEKP VKSE VQDG SSKVPH K E G+VSAGASH+KA T+ RARRGGGRAGGTR
Sbjct: 1 MNRRTVPVVKLNYSL----------------------------------------VVRRKKEALSRAQAAAESISTHSGPIQVALGAIAFYGHGSLWSKEVIECIRAIGRSVHELIDDVDALRKLSSERVRVAQEALGEKNHTSSALK---ASTKKHMNANCERTTY-SWLPRSKSKAEYIQEYQMKKQVRGFFEHDSRCAQAIDADVTTRSTSIISELGLIVCDGDDAMEARVAGLVVGVDSLKKLSRRTVRKAKRNLAEQQWSCSIAARSAKEERSEFQYWADVEISSDESAGQEFAXXXXXXDETIPAVGKRGPKRARSNSPDSSAPGGDGKKQRKGEGADVSAEASHMKKAKKTTEEGK----------------------------------------------------------------------------------EEGQDIETGKEQVKTEVKFDGVLADAPFQFPFPVAAEKPAVKSECVQDGTSSKVPNVKKEGGNVSAGASHMK-AKKTTEQGVAEGQDIGTGKEQMKTEVKVDGVLAGAPFQFPFPVAAEKPAVKSECVQDGTSSKVPHVKKEGGNVSAGASHMKATTLGRARRGGGRAGGTR 490
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1674.1 vs. uniprot
Match: A0A6H5JHT4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT4_9PHAE) HSP 1 Score: 164 bits (415), Expect = 2.800e-42 Identity = 114/155 (73.55%), Postives = 120/155 (77.42%), Query Frame = 1
Query: 763 ISELRSIVCDGDDGVEASVAGLVAG-VHSLKKLSRRAVRKAKHNLAEVQRSCRIAARSARQERSEFQLWANVEISSDESAGHESXXXXXXXXE---TIPAVS----ERGPKRARSNSPDSSAPGGDSKKQRKGEGADVSAEASHMKKAQTTTEEG 1203
+S+L SIVCDGDD +EASVAGLVAG V SLKKLS R V KAK NLAEVQRSCRI ARSARQERSEFQ WA VEISS ESA XXXXXXXX TIP V ERGPKRARSNSPDSS PGGD KK RKG+GADVSAEASHMK+ + G
Sbjct: 1 MSKLGSIVCDGDDDMEASVAGLVAGGVDSLKKLSSRTVTKAKRNLAEVQRSCRITARSARQERSEFQRWAIVEISSHESAXXXXXXXXXXXXXSEFTIPRVDLLLGERGPKRARSNSPDSSVPGGDGKKHRKGKGADVSAEASHMKERSSIVAGG 155
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1674.1 vs. uniprot
Match: D8LHS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS0_ECTSI) HSP 1 Score: 158 bits (399), Expect = 1.330e-35 Identity = 92/134 (68.66%), Postives = 93/134 (69.40%), Query Frame = 1
Query: 1483 EQVKTEVKVDGVLVDASFQFPFPVAAEKPAVKSECVQDGASSKVPHAKNEDGNVSAGASHIKKAKTTTEEGVEEEQDRETGKEQVKTEVKVDGVLVDAPFQFPFPVVAEKPEVKSERVQDGASSKVPHAKNEEG 1884
E VKTEVKV GVL DA FQFPFPVA EKPAVKSECVQDGASSKVP K E NVSAGASHIK VKTEVKVDGVL DAPFQ P PV AE+P VKSE VQDGASSKVPH K E G
Sbjct: 878 ETVKTEVKVHGVLADAPFQFPFPVATEKPAVKSECVQDGASSKVPKVKKEGRNVSAGASHIK----------------------VKTEVKVDGVLADAPFQSPLPVAAEEPVVKSEFVQDGASSKVPHVKKENG 989 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1273.1674.1 >prot_E-siliculosus-1a_F_contig1273.1674.1 ID=prot_E-siliculosus-1a_F_contig1273.1674.1|Name=mRNA_E-siliculosus-1a_F_contig1273.1674.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=618bp MSRRTIPVVRMNYSLGGVGEETTTGSSDGEPHNDHVASRKSLPEGESLPEback to top mRNA from alignment at E-siliculosus-1a_F_contig1273:15172..26729- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1273.1674.1 ID=mRNA_E-siliculosus-1a_F_contig1273.1674.1|Name=mRNA_E-siliculosus-1a_F_contig1273.1674.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11558bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1273:15172..26729- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1273:15172..26729- >mRNA_E-siliculosus-1a_F_contig1273.1674.1 ID=mRNA_E-siliculosus-1a_F_contig1273.1674.1|Name=mRNA_E-siliculosus-1a_F_contig1273.1674.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3708bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1273:15172..26729- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |