mRNA_E-siliculosus-1a_F_contig1273.1673.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1273.1673.1
Unique NamemRNA_E-siliculosus-1a_F_contig1273.1673.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1273.1673.1 vs. uniprot
Match: D8LHR9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHR9_ECTSI)

HSP 1 Score: 424 bits (1089), Expect = 7.210e-148
Identity = 219/245 (89.39%), Postives = 223/245 (91.02%), Query Frame = 3 
Query:  159 SGDMKIRQVLFLVATPGMHPLAAAVATITPNANTKTASGDRNNAGGKTAPTAAGVGGASRAYPHLGSLASDLDACSTEASSCLDDQVCLECMTSYVDHPLEYQSCLDNYVTDWASATVCDGRAEQPCCANFVSEGNCLENEPFIEYWKCNLGLFDGCVDYDMTCLGTEGMTEDLGLNTSTTXXXXXXXXXXXXXXXXSIVSDAVVEDVATDESGAARKTFVVANVVVATASALLAGIAAVGLRLG 893
            SGDMKIR+VLFLVATPGMHPLAA  AT+TPNANTKTASGDRNNAG KTAPTAAGVGGASRA+PHLGSLASDLDACSTEASSCLDDQVCLECMTSYVDHPLEYQSCLDNYVTDWASATVCDGRAEQPCCANFVSEGNCLENEPFIEYWKCNLGLFDGCVDYDMTCLGTEGMTEDLGLNTST                 SIVSDAVVEDVATDESGAARKTFV+ANVVVATASALLAGIAAVG  LG
Sbjct:   15 SGDMKIRRVLFLVATPGMHPLAATAATVTPNANTKTASGDRNNAGEKTAPTAAGVGGASRAHPHLGSLASDLDACSTEASSCLDDQVCLECMTSYVDHPLEYQSCLDNYVTDWASATVCDGRAEQPCCANFVSEGNCLENEPFIEYWKCNLGLFDGCVDYDMTCLGTEGMTEDLGLNTSTASTGTSASSST------SIVSDAVVEDVATDESGAARKTFVMANVVVATASALLAGIAAVGSWLG 253
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1273.1673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHR9_ECTSI7.210e-14889.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1273contigE-siliculosus-1a_F_contig1273:9252..12821 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size729
Model size896
Exons4
Ec32 orthologEc-18_000200.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categorychloroplast
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1273.1673.1prot_E-siliculosus-1a_F_contig1273.1673.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1273 11023..12821 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.2601414-UTR-E-siliculosus-1a_F_contig1273:9251..94061622927795.2601414-UTR-E-siliculosus-1a_F_contig1273:9251..9406Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1273 9252..9406 +
1696318682.472666-UTR-E-siliculosus-1a_F_contig1273:9251..94061696318682.472666-UTR-E-siliculosus-1a_F_contig1273:9251..9406Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1273 9252..9406 +
1622927795.2743866-UTR-E-siliculosus-1a_F_contig1273:11010..110221622927795.2743866-UTR-E-siliculosus-1a_F_contig1273:11010..11022Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1273 11011..11022 +
1696318682.4850817-UTR-E-siliculosus-1a_F_contig1273:11010..110221696318682.4850817-UTR-E-siliculosus-1a_F_contig1273:11010..11022Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1273 11011..11022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927795.289359-CDS-E-siliculosus-1a_F_contig1273:11022..112731622927795.289359-CDS-E-siliculosus-1a_F_contig1273:11022..11273Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1273 11023..11273 +
1696318682.4936323-CDS-E-siliculosus-1a_F_contig1273:11022..112731696318682.4936323-CDS-E-siliculosus-1a_F_contig1273:11022..11273Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1273 11023..11273 +
1622927795.317371-CDS-E-siliculosus-1a_F_contig1273:11737..119111622927795.317371-CDS-E-siliculosus-1a_F_contig1273:11737..11911Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1273 11738..11911 +
1696318682.5018818-CDS-E-siliculosus-1a_F_contig1273:11737..119111696318682.5018818-CDS-E-siliculosus-1a_F_contig1273:11737..11911Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1273 11738..11911 +
1622927795.3349197-CDS-E-siliculosus-1a_F_contig1273:12517..128211622927795.3349197-CDS-E-siliculosus-1a_F_contig1273:12517..12821Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1273 12518..12821 +
1696318682.5101757-CDS-E-siliculosus-1a_F_contig1273:12517..128211696318682.5101757-CDS-E-siliculosus-1a_F_contig1273:12517..12821Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1273 12518..12821 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1273.1673.1

>prot_E-siliculosus-1a_F_contig1273.1673.1 ID=prot_E-siliculosus-1a_F_contig1273.1673.1|Name=mRNA_E-siliculosus-1a_F_contig1273.1673.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=243bp
MKIRQVLFLVATPGMHPLAAAVATITPNANTKTASGDRNNAGGKTAPTAA
GVGGASRAYPHLGSLASDLDACSTEASSCLDDQVCLECMTSYVDHPLEYQ
SCLDNYVTDWASATVCDGRAEQPCCANFVSEGNCLENEPFIEYWKCNLGL
FDGCVDYDMTCLGTEGMTEDLGLNTSTTSTTSTTSTGTSASSSTSIVSDA
VVEDVATDESGAARKTFVVANVVVATASALLAGIAAVGLRLG*
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mRNA from alignment at E-siliculosus-1a_F_contig1273:9252..12821+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1273.1673.1 ID=mRNA_E-siliculosus-1a_F_contig1273.1673.1|Name=mRNA_E-siliculosus-1a_F_contig1273.1673.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3570bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1273:9252..12821+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTGCAGGTCCATCCAGGTCCATCCAGCAGGGGGAAAGAGAACGCATTG
TCCATCACCAACAATCCTCATCGGGACTGCAGCGTGTGATACGCTTACGC
CGTGGGGGTGGCCGACGACAGGCAGGTGGGCAGAGAGGAGAGCCGCGTGC
ACCAGGTGGGTGTTGGGTCTGCTATGTCTGGATTTCTCGAAAAGCTTGTT
TTTGAAGGAAGGCTTGCTACATGGACTTACCTTGCACACGGGCGTGTCTC
TGTGACACACGGAAAACGATTCCACCGACAAAGCGAAAAGGGCACGCTTA
CAAATACATACAGCAGCAGTAGCGTGCGCTCCCTCTCTCTTGTACCACGC
CAGTGGGGGTCTTGGACCATGTTAGACCATGGCTCAAATCTCGACTCTCA
CGTATATGAAGGAAGACCCTTGCCTTCTCAGGCCGAGAGATGTTCCCACC
AAACCACACCACTTGTAAGAAAACGGTGTCAGGTGCGGACGAAACTATTC
TGTTTACGGCATCGAAACGGACGTGTATCTAGATGTACCACAGACATGGA
CTACACCAACTTCTACCTAGTTGCCATTTAGATGCACTCGTCTGACACAC
CCCAGTCTTTAGACGACAACTACCCGTCGGTTGCAAAAGATACCACACCC
GTGTGATCACTTTGTACTGCAGTGGCTTGTTGGTGAACTGCTTTTCAGGT
ACCAGCTGTGTTAAGGGTGTGTGATATCTTACGTCACGCCTGTGTCGCCA
ATGTGATGATGAAGTGCGCTCAATGTTTAGATGCACTCGTCCGACACACC
CCAGTCTTTAGACGACAACTGCCCGTCGGTTGCAAAAGATACCACACCAG
TGAGATCACTTTTTACTGCATTGGCTCGTGGTGAACTGCTGTACAGGTAC
CAGGGGTGTGATATCTTACGTCACGCCTGTGTCGCCAGTGTGTGATGAAG
TGCGCTCAATGCCACGTACAGCGCATGAAGGGTACTCGTAACGTACAACG
TGGGCGATAGCCTGAAGTGGCACTCGCGGATTCGTCACGCTCTTCCCTTT
GGAATTCCTCCTACTCAAAAAGCATATAGCAACGACCTTGAAATCTCGTA
ATGCCGGTAATCTGAGCGCTACATACTATTGTACGTACTCCGAGCGGTAC
GATGGATGTATAGCGAAACATTTTTGAGGGCGTTGAGTTGTGCAGGCATC
CGCCATGCATCAGCGGTATCGGCCGCTACAGCAGTACATACACATTTGTA
GGCATAAAAAATCCCCCGGAGAAGACAGGAACATGGTCGTTCCCGTGGGC
ATACAGCAGCACTATCCAGCAGCGCCGAACAGATGCTTGTATGACTTGGA
GATCTGGTTTTATATGTCACCGCCCACCGTCCGCAGGGTAGTGTGTAGAC
TACGAGAGGGTATTAACACTTTCAACAGTCTACGCAGCACAATTGATTAA
GCGAACATATGGGATAAAGTATTCAATCCGTGCTTTGGGGTTAGGGTTAG
GGATAGGGATAGGGTCTGCGTGGCCCCCTCCCTATTCTTTTGCTAGATAC
TCGTAGGCGGTCGAACAGTTGTCTACGGACAAACGTTTCGATGATAAGTT
GGCTGGTCTGTACCGAGTTGCTTTGTTTCGTGTGGAGTGTTCGAGTCGCC
TGGAGGCCTTGGCCAAGCAACTGCGATGCCGTCAGGGGAAACATAAGAAC
ATAGCCATCGATGCCCGCCCCCCATTTTTGCTTTTCCGCCCATGCTATCT
GTATCCTAGAACTCCGGAGACATGAAGATCCGGCAGGTGCTTTTCCTTGT
GGCGACACCGGGCATGCATCCTCTGGCCGCGGCCGTCGCCACCATTACGC
CGAATGCTAACACCAAGACTGCTAGCGGTGACCGGAATAACGCTGGGGGA
AAAACTGCACCTACCGCGGCAGGAGTCGGCGGTGCCTCCCGGGCGTATCC
CCACCTGGGCTCCTTGGCGAGTGATCTCGACGCGTGTTCCACGGAGGCTA
GCAGTTGTCTAGACGACCAAGTGTGAGTACCAGCAGCGACGAGAACACAT
CCTATTCCCCCGTTCAGGATTTCGCAACTGGCCGCAGCGTTTGTTGCTTC
GGAAGTTTATCTTACTTCGCTACCAGGCAGAGTAGAGCGAAAGAAAGTCT
TCGCAGTTTTCAAATTTCGCAAGCACTCCTGGATTATATGTAGTAAGGAT
CAGCTACGTCGGGATTAGGGTTATCGTCTGCGTGCCCCCTGCCTGGTCAT
TTTTCGAACGAACGTGCTCTCGTTGCGTTGTCAGTCCGAGTAGAGTTGCC
CGGAGTGCTTGGGCCACCCCCTCCTAAGCGGTGCGCCTCCCGAGAAAGGA
GAAAAAAAGTAATCCAACCACCCAACGATTATTTTCGGCCGCAGCGTCAA
CACCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGGGA
CATACATGCGGGACCCCCGCACGCCCAATGCCGCAGGTGCCTGGAGTGCA
TGACGTCCTACGTGGACCACCCCCTGGAGTACCAATCGTGCTTGGACAAC
TATGTAACCGACTGGGCGTCTGCGACGGTGTGCGACGGAAGAGCAGAGCA
GCCATGCTGCGCCAACTTCGTTTCTGAGGGAAATTGCCTCGAAAACGAAC
CCTTCATAGAGTGAGCGACGCAAAATGTTGCTGGAATTTCGAAAAATATG
TGTCATTCGAGCTGATACTGTAGACGAAAGCTGTCAGAAAGCAGGGGTTT
CGGTATCACAGCTGATTCGATGTTGTTGTGCTTGAATTTTGTGGTATTTC
CTTTCGCGTGTTTCTTCTTCGACTTCGTTCTTCGCATCGTCAGAACTCTG
AAGCCGACCGTTTTGGGGGGAGGTTTCTACAATGTATGATATGGGGAAAG
ACAGACGCTGCTTTGCGCTGGGCACACCGGATTCACCCGGGCGACGTTAG
CGTAAAGCGGAAGCGACTCCCCGGTACTCGGGTTTGGTCTGGTGGGTTCC
TCTCATGACTGACTCTCTCTCTCTGGGGGTAGGTCAATACCGTTGCGGCC
TAGGAAGGCGTCGTTAGGAAGATGACCCCGCTGGTGCGTGTATCCGATCC
GTACAGAGGTGCTATTCCTCCCTGTCGCGTGTCGGCAGGGAACAAAACCA
GCGTGTTCTGGTGCTTCTGTTCACCCTCCATTGACATAGCGCGAGACACC
GATCACTATCCCCCCCAATCATGGCACCCTGCTGCTGCCGCCGCCGCGGC
TGCTGCTGCTTCGCAGGTACTGGAAGTGCAACCTGGGCTTGTTCGACGGG
TGCGTGGACTACGACATGACCTGCCTTGGCACGGAGGGCATGACCGAGGA
CCTCGGCCTCAACACCAGCACCACCAGCACCACCAGCACCACCAGCACCG
GCACCAGCGCTAGCAGTAGTACCAGCATCGTGTCGGATGCGGTTGTGGAG
GATGTTGCGACGGACGAAAGCGGGGCTGCCAGGAAAACCTTCGTCGTGGC
CAACGTTGTCGTCGCGACGGCGTCTGCGCTGCTAGCAGGGATTGCCGCAG
TTGGCTTGCGGCTGGGTTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1273:9252..12821+

>mRNA_E-siliculosus-1a_F_contig1273.1673.1 ID=mRNA_E-siliculosus-1a_F_contig1273.1673.1|Name=mRNA_E-siliculosus-1a_F_contig1273.1673.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1458bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1273:9252..12821+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAAGATCCGGCAGGTGCTTTTCCTTGTGGCGACACCGGGCATGCATCC
TCTGGCCGCGGCCGTCGCCACCATTACGCCGAATGCTAACACCAAGACTG
CTAGCGGTGACCGGAATAACGCTGGGGGAAAAACTGCACCTACCGCGGCA
GGAGTCGGCGGTGCCTCCCGGGCGTATCCCCACCTGGGCTCCTTGGCGAG
TGATCTCGACGCGTGTTCCACGGAGGCTAGCAGTTGTCTAGACGACCAAG
TATGAAGATCCGGCAGGTGCTTTTCCTTGTGGCGACACCGGGCATGCATC
CTCTGGCCGCGGCCGTCGCCACCATTACGCCGAATGCTAACACCAAGACT
GCTAGCGGTGACCGGAATAACGCTGGGGGAAAAACTGCACCTACCGCGGC
AGGAGTCGGCGGTGCCTCCCGGGCGTATCCCCACCTGGGCTCCTTGGCGA
GTGATCTCGACGCGTGTTCCACGGAGGCTAGCAGTTGTCTAGACGACCAA
GTGTGCCTGGAGTGCATGACGTCCTACGTGGACCACCCCCTGGAGTACCA
ATCGTGCTTGGACAACTATGTAACCGACTGGGCGTCTGCGACGGTGTGCG
ACGGAAGAGCAGAGCAGCCATGCTGCGCCAACTTCGTTTCTGAGGGAAAT
TGCCTCGAAAACGAACCCTTCATAGAGTGCCTGGAGTGCATGACGTCCTA
CGTGGACCACCCCCTGGAGTACCAATCGTGCTTGGACAACTATGTAACCG
ACTGGGCGTCTGCGACGGTGTGCGACGGAAGAGCAGAGCAGCCATGCTGC
GCCAACTTCGTTTCTGAGGGAAATTGCCTCGAAAACGAACCCTTCATAGA
GTACTGGAAGTGCAACCTGGGCTTGTTCGACGGGTGCGTGGACTACGACA
TGACCTGCCTTGGCACGGAGGGCATGACCGAGGACCTCGGCCTCAACACC
AGCACCACCAGCACCACCAGCACCACCAGCACCGGCACCAGCGCTAGCAG
TAGTACCAGCATCGTGTCGGATGCGGTTGTGGAGGATGTTGCGACGGACG
AAAGCGGGGCTGCCAGGAAAACCTTCGTCGTGGCCAACGTTGTCGTCGCG
ACGGCGTCTGCGCTGCTAGCAGGGATTGCCGCAGTTGGCTTGCGGCTGGG
TTAGGTACTGGAAGTGCAACCTGGGCTTGTTCGACGGGTGCGTGGACTAC
GACATGACCTGCCTTGGCACGGAGGGCATGACCGAGGACCTCGGCCTCAA
CACCAGCACCACCAGCACCACCAGCACCACCAGCACCGGCACCAGCGCTA
GCAGTAGTACCAGCATCGTGTCGGATGCGGTTGTGGAGGATGTTGCGACG
GACGAAAGCGGGGCTGCCAGGAAAACCTTCGTCGTGGCCAACGTTGTCGT
CGCGACGGCGTCTGCGCTGCTAGCAGGGATTGCCGCAGTTGGCTTGCGGC
TGGGTTAG
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