mRNA_E-siliculosus-1a_F_contig12728.1671.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12728.1671.1
Unique NamemRNA_E-siliculosus-1a_F_contig12728.1671.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig12728.1671.1 vs. uniprot
Match: D7FKZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ4_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 2.530e-82
Identity = 132/148 (89.19%), Postives = 135/148 (91.22%), Query Frame = 1 
Query:  109 VHVGGLASAAPEARDLDGSNYDMIRARLESAQRLALTTTSTLEEGIFTCQGEKADAVDREGKADENMRKLNEDLSDCANYADGSHKAWVSCTEGLTSVDRVSLDTYFTVEEITFQVGVFVPRRAASDLEASNIFSIANRADRMEETQQ 552
            VHVGGLA   PE  D  GSNYDMIRAR ESAQRLALT TSTLEE IFTCQGEKADAVDRE K DENMRKLNEDLSDCANYADGSHKAWVSCTEGLTSVDRVSLDTYF+VEEIT QVGVFVPRRAASDLEASNIFS+ANRADR+EETQQ
Sbjct:   86 VHVGGLA---PEVEDRIGSNYDMIRARFESAQRLALTATSTLEEEIFTCQGEKADAVDREVKTDENMRKLNEDLSDCANYADGSHKAWVSCTEGLTSVDRVSLDTYFSVEEITLQVGVFVPRRAASDLEASNIFSVANRADRVEETQQ 230
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BLAST of mRNA_E-siliculosus-1a_F_contig12728.1671.1 vs. uniprot
Match: A0A6H5JBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW0_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 5.590e-47
Identity = 88/110 (80.00%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:  223 TSTLEEGIFTCQGEKADAVDREGKADENMRKLNEDLSDCANYADGSHKAWVSCTEGLTSVDRVSLDTYFTVEEITFQVGVFVPRRAASDLEASNIFSIANRADRMEETQQ 552
            TSTL   I TCQ EKADA+D + + +E+MRKLN DLSDCANY      AWVSCTEGLTSVDRVSLDTYF+VEEITFQVGVFVPRRAASDLEASNIFSIANRADR+EETQQ
Sbjct:  339 TSTLGAKIVTCQREKADALDSKTQTEESMRKLNGDLSDCANYVSIQQAAWVSCTEGLTSVDRVSLDTYFSVEEITFQVGVFVPRRAASDLEASNIFSIANRADRVEETQQ 448
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BLAST of mRNA_E-siliculosus-1a_F_contig12728.1671.1 vs. uniprot
Match: A0A6H5KKP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKP7_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 5.700e-32
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:  349 ADGSHKAWVSCTEGLTSVDRVSLDTYFTVEEITFQVGVFVPRRAASDLEASNIFSIANRADRMEETQQ 552
            ADGSH+AWVSCTEGLTSVDRVSLDT F+VEEITFQV VFVPRRAASDLEASNIFSIANRADR+EETQQ
Sbjct:   53 ADGSHRAWVSCTEGLTSVDRVSLDTNFSVEEITFQVRVFVPRRAASDLEASNIFSIANRADRVEETQQ 120
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BLAST of mRNA_E-siliculosus-1a_F_contig12728.1671.1 vs. uniprot
Match: D7G3D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D5_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 2.470e-29
Identity = 66/80 (82.50%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:  109 VHVGGLASAAPEARDLDGSNYDMIRARLESAQRLALTTTSTLEEGIFTCQGEKADAVDREGKADENMRKLNEDLSDCANY 348
            V VGGLA   PEA D  GS+YDMIRARLESAQ+LALT TSTLEE IFTCQGEKADAVDRE K  ENMRKLNEDLSDCANY
Sbjct:  597 VRVGGLA---PEAEDRIGSDYDMIRARLESAQQLALTVTSTLEEDIFTCQGEKADAVDREVKTGENMRKLNEDLSDCANY 673
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BLAST of mRNA_E-siliculosus-1a_F_contig12728.1671.1 vs. uniprot
Match: D7FRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE6_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 8.140e-28
Identity = 66/125 (52.80%), Postives = 80/125 (64.00%), Query Frame = 1 
Query:  109 VHVGGLASAAPEARDLDGSNYDMIRARLESAQRLALTTTSTLEEGIFTCQGEKADAVDREGKADENMRKLNEDLSDCANYADGSHKAWVSCTEGLTSVDRVSLDTYFTVEE----ITFQVGVFVP 471
            V VGGLASAAPEA DLDGS+YDMIRARLE+ QRL LT TSTLE  IFTCQGEKADA DRE + +E  ++L ++L+ C    D +  A  SC      +   S+D   T++E     T  VG   P
Sbjct:  464 VRVGGLASAAPEAEDLDGSDYDMIRARLEAVQRLVLTATSTLEAEIFTCQGEKADAGDREAEIEEQRQELEDELAVCEEELDETQTAADSCAADFEDISSRSVDLVRTLQEDAAKTTVHVGGLAP 588
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BLAST of mRNA_E-siliculosus-1a_F_contig12728.1671.1 vs. uniprot
Match: D7FRD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD3_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.860e-10
Identity = 31/40 (77.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  352 DGSHKAWVSCTEGLTSVDRVSLDTYFTVEEITFQVGVFVP 471
            DGSHKAW+SC E LTSVDRVSLD  F VEEI+F+VGVF P
Sbjct:    6 DGSHKAWMSCLECLTSVDRVSLDIDFFVEEISFRVGVFCP 45
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12728.1671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FKZ4_ECTSI2.530e-8289.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBW0_9PHAE5.590e-4780.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKP7_9PHAE5.700e-3292.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3D5_ECTSI2.470e-2982.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRE6_ECTSI8.140e-2852.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRD3_ECTSI2.860e-1077.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12728contigE-siliculosus-1a_F_contig12728:6..1327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size552
Model size553
Exons3
Ec32 orthologEc-21_002270.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categorymitochondrion
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12728.1671.1prot_E-siliculosus-1a_F_contig12728.1671.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12728 6..1327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927794.9946697-CDS-E-siliculosus-1a_F_contig12728:5..2091622927794.9946697-CDS-E-siliculosus-1a_F_contig12728:5..209Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12728 6..209 -
1696318682.3702672-CDS-E-siliculosus-1a_F_contig12728:5..2091696318682.3702672-CDS-E-siliculosus-1a_F_contig12728:5..209Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12728 6..209 -
1622927795.0069146-CDS-E-siliculosus-1a_F_contig12728:666..8321622927795.0069146-CDS-E-siliculosus-1a_F_contig12728:666..832Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12728 667..832 -
1696318682.379651-CDS-E-siliculosus-1a_F_contig12728:666..8321696318682.379651-CDS-E-siliculosus-1a_F_contig12728:666..832Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12728 667..832 -
1622927795.0197256-CDS-E-siliculosus-1a_F_contig12728:1145..13271622927795.0197256-CDS-E-siliculosus-1a_F_contig12728:1145..1327Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12728 1146..1327 -
1696318682.3911428-CDS-E-siliculosus-1a_F_contig12728:1145..13271696318682.3911428-CDS-E-siliculosus-1a_F_contig12728:1145..1327Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12728 1146..1327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12728.1671.1

>prot_E-siliculosus-1a_F_contig12728.1671.1 ID=prot_E-siliculosus-1a_F_contig12728.1671.1|Name=mRNA_E-siliculosus-1a_F_contig12728.1671.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=184bp
WTRLRRPLTRAPRTLRTSPPVRWTLFTPSRRMRPRQVHVGGLASAAPEAR
DLDGSNYDMIRARLESAQRLALTTTSTLEEGIFTCQGEKADAVDREGKAD
ENMRKLNEDLSDCANYADGSHKAWVSCTEGLTSVDRVSLDTYFTVEEITF
QVGVFVPRRAASDLEASNIFSIANRADRMEETQQ
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mRNA from alignment at E-siliculosus-1a_F_contig12728:6..1327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12728.1671.1 ID=mRNA_E-siliculosus-1a_F_contig12728.1671.1|Name=mRNA_E-siliculosus-1a_F_contig12728.1671.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1322bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12728:6..1327- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGGACGAGACTCAGACGGCCGCTGACTCGTGCGCCGCGGACTTTGAGGAC
ATCTCCTCCCGTTCGGTGGACCTTGTTCACACCCTCCAGGAGGATGCGGC
CAAGACAGGTGCACGTGGGAGGTCTCGCCTCTGCCGCGCCGGAAGCGAGA
GACCTCGACGGATCGAATTACGACATGATCCGGTACGTTTTTACGTTTTT
GTGTGGGCGTCGAACTGATTTGTCTTTGGTTTTGTTGTGCCTTACGATGG
TTGTAGGTGACGATGTTGCTGTGGATGGTTGTGGCGGTATCCGTTGTTTG
CGATGGACACGGTTGCGCGACGAAGCTGTCACGCTGGTACCTCAGTGCCG
GCAAGGACAAATCGAGTCCTTCAACCCTCTCGCCGCTCTCTGTCTCGAGG
AAGGTGGGCGGGTCGAGGAGATGTCACTTGAGAGGTAAGTGTTCATGACC
CCCCCTCCGCACACGCCTCGGCTGTTTCGTTGCCGTACCTTTTAGCGCCC
GCTTGGAGTCTGCGCAGCGGCTGGCATTGACGACCACGTCGACGCTGGAA
GAGGGAATCTTCACGTGCCAGGGCGAGAAGGCAGACGCCGTCGACCGAGA
GGGCAAGGCAGACGAGAACATGCGGAAGCTCAACGAGGACCTCTCCGACT
GCGCAAACTACGTGAGCATCCGATAAGCGTGACCGAGCGTGAGATCAAGC
GCCGTTTGTCGCTCGCTCTGTTGGTGGTATCCATTTTCTCGATTCTGCAC
AAGTATAACACCGCTAGTTGCGTGCCTAGGGCGAGGGGAGCTGGTCAATC
CCATGCCCCGAACATTCGATCTCTTCGCACTTTTCAATGTCAAACATTTT
TGAAACGTTCGCGAAACCGTCGCCGGAAGGGGCCCTTTGGTGGTTGGTGT
TCAGACTGGGGGGCGGCAGCGGCATCGAGGGGCTAAGGGCGGTGGATGAT
GCATTGGGAAAGGGGGGCTACGCGGTTGTCGCGCTGTTGATAGTGGGGCT
AGACAGCATACCGTCGATAGCTGATCCCCCGACAGCCATCGACAGAGCTA
CTCTGAAATCTCAGCCCCCCACCGGTGCCACTCGATTGTTTCGCTGGTAT
GACACTCAATAAACGCAGGCGGATGGCTCCCACAAGGCATGGGTGTCGTG
CACCGAGGGCCTCACCAGCGTCGACAGGGTTTCGCTGGACACGTATTTTA
CCGTTGAGGAAATCACCTTCCAAGTCGGGGTGTTTGTCCCGCGCCGAGCG
GCTTCCGACCTGGAGGCGTCAAACATCTTCAGCATCGCGAACCGCGCCGA
CCGGATGGAGGAGACGCAGCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12728:6..1327-

>mRNA_E-siliculosus-1a_F_contig12728.1671.1 ID=mRNA_E-siliculosus-1a_F_contig12728.1671.1|Name=mRNA_E-siliculosus-1a_F_contig12728.1671.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1104bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12728:6..1327- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGGACGAGACTCAGACGGCCGCTGACTCGTGCGCCGCGGACTTTGAGGAC
ATCTCCTCCCGTTCGGTGGACCTTGTTCACACCCTCCAGGAGGATGCGGC
CAAGACAGGTGCACGTGGGAGGTCTCGCCTCTGCCGCGCCGGAAGCGAGA
GACCTCGACGGATCGAATTACGACATGATCCGTGGACGAGACTCAGACGG
CCGCTGACTCGTGCGCCGCGGACTTTGAGGACATCTCCTCCCGTTCGGTG
GACCTTGTTCACACCCTCCAGGAGGATGCGGCCAAGACAGGTGCACGTGG
GAGGTCTCGCCTCTGCCGCGCCGGAAGCGAGAGACCTCGACGGATCGAAT
TACGACATGATCCGCGCCCGCTTGGAGTCTGCGCAGCGGCTGGCATTGAC
GACCACGTCGACGCTGGAAGAGGGAATCTTCACGTGCCAGGGCGAGAAGG
CAGACGCCGTCGACCGAGAGGGCAAGGCAGACGAGAACATGCGGAAGCTC
AACGAGGACCTCTCCGACTGCGCAAACTACCGCCCGCTTGGAGTCTGCGC
AGCGGCTGGCATTGACGACCACGTCGACGCTGGAAGAGGGAATCTTCACG
TGCCAGGGCGAGAAGGCAGACGCCGTCGACCGAGAGGGCAAGGCAGACGA
GAACATGCGGAAGCTCAACGAGGACCTCTCCGACTGCGCAAACTACGCGG
ATGGCTCCCACAAGGCATGGGTGTCGTGCACCGAGGGCCTCACCAGCGTC
GACAGGGTTTCGCTGGACACGTATTTTACCGTTGAGGAAATCACCTTCCA
AGTCGGGGTGTTTGTCCCGCGCCGAGCGGCTTCCGACCTGGAGGCGTCAA
ACATCTTCAGCATCGCGAACCGCGCCGACCGGATGGAGGAGACGCAGCAG
GCGGATGGCTCCCACAAGGCATGGGTGTCGTGCACCGAGGGCCTCACCAG
CGTCGACAGGGTTTCGCTGGACACGTATTTTACCGTTGAGGAAATCACCT
TCCAAGTCGGGGTGTTTGTCCCGCGCCGAGCGGCTTCCGACCTGGAGGCG
TCAAACATCTTCAGCATCGCGAACCGCGCCGACCGGATGGAGGAGACGCA
GCAG
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