mRNA_E-siliculosus-1a_F_contig12716.1668.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig12716.1668.1
Unique NamemRNA_E-siliculosus-1a_F_contig12716.1668.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig12716.1668.1 vs. uniprot
Match: D8LIQ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIQ9_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 6.880e-37
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1
Query:    7 QVWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRELSTRSTR 195
            +VWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHR+ ++ + R
Sbjct:   29 EVWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRKKASEAKR 91          
BLAST of mRNA_E-siliculosus-1a_F_contig12716.1668.1 vs. uniprot
Match: A0A835ZAA4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.220e-18
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    7 QVWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRELST 183
            ++WM EQKK+ + G + KWE K++FREYMED+NT TLPH+KYI+  KWEM E+  E S+
Sbjct:  250 EIWMQEQKKVAEAGLLQKWEVKEFFREYMEDYNTATLPHEKYINYAKWEMEEWESEWSS 308          
BLAST of mRNA_E-siliculosus-1a_F_contig12716.1668.1 vs. uniprot
Match: A0A0W8DDC6_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DDC6_PHYNI)

HSP 1 Score: 78.6 bits (192), Expect = 6.480e-16
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 SGQVWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRE 174
            S Q W+ + KK+ +  G PKWE  + F+EYMED+NTCTLPH+KY D+EK+EM  +H++
Sbjct:  124 SFQAWLRDVKKMGEFNG-PKWEAMELFKEYMEDYNTCTLPHEKYYDIEKYEMKRYHKQ 180          
BLAST of mRNA_E-siliculosus-1a_F_contig12716.1668.1 vs. uniprot
Match: W2R0L3_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R0L3_PHYPN)

HSP 1 Score: 78.6 bits (192), Expect = 1.330e-15
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 SGQVWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRE 174
            S Q W+ + KK+ +  G PKWE  + F+EYMED+NTCTLPH+KY D+EK+EM  +H++
Sbjct:  203 SFQAWLRDVKKMGEFNG-PKWEAMELFKEYMEDYNTCTLPHEKYYDIEKYEMKRYHKQ 259          
BLAST of mRNA_E-siliculosus-1a_F_contig12716.1668.1 vs. uniprot
Match: W4FFX2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FFX2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.890e-15
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 SGQVWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRELSTRSTR 195
            S  VW+ + KKI+D  G PKWE  + F+EYMED+NT T PH+KY D+EK+EM + H++ S  + R
Sbjct:  115 SFNVWLRDIKKINDFNG-PKWEAMELFKEYMEDYNTATFPHEKYYDVEKYEMRKHHKKASKDNKR 178          
BLAST of mRNA_E-siliculosus-1a_F_contig12716.1668.1 vs. uniprot
Match: A0A418EPQ7_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418EPQ7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.630e-15
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1
Query:    1 SGQVWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRELSTRSTR 195
            S  VW+ + KKI+D  G PKWE  + F+EYMED+NT T PH+KY D+EK+EM + H++ S  + R
Sbjct:  134 SFNVWLRDIKKINDFNG-PKWEAMELFKEYMEDYNTATFPHEKYYDVEKYEMRKHHKKASKDNKR 197          
BLAST of mRNA_E-siliculosus-1a_F_contig12716.1668.1 vs. uniprot
Match: A0A3F2RTC5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTC5_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.870e-15
Identity = 30/58 (51.72%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 SGQVWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRE 174
            S Q W+ + KK+ +  G PKWE  + F+EYMED+NTCTLPH+KY D+EK+EM ++ ++
Sbjct:   84 SFQAWLRDVKKMGEFNG-PKWEAMELFKEYMEDYNTCTLPHEKYYDVEKYEMRQYQKQ 140          
BLAST of mRNA_E-siliculosus-1a_F_contig12716.1668.1 vs. uniprot
Match: A0A8K1FMQ5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMQ5_PYTOL)

HSP 1 Score: 76.3 bits (186), Expect = 3.880e-15
Identity = 29/67 (43.28%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 SGQVWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRELSTRSTRSV 201
            S Q W+ + KK+ +  G PKWE  +YF+EYMED+NT T+PH+KY D+EK+EM ++ ++   ++ + +
Sbjct:  112 SFQAWLRDIKKVTEFNG-PKWEAMEYFKEYMEDYNTATMPHEKYYDIEKYEMGKYEKDQKKKARKHL 177          
BLAST of mRNA_E-siliculosus-1a_F_contig12716.1668.1 vs. uniprot
Match: A0A484EF14_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF14_BRELC)

HSP 1 Score: 76.6 bits (187), Expect = 6.260e-15
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 SGQVWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRE 174
            S Q W+   KK+ +  G PKWE  + F+EYMEDFNTCTLPH+KY D+EK+EM ++ ++
Sbjct:  193 SFQAWLRNVKKMGEFNG-PKWEAMELFKEYMEDFNTCTLPHEKYYDIEKYEMLQYQKQ 249          
BLAST of mRNA_E-siliculosus-1a_F_contig12716.1668.1 vs. uniprot
Match: A0A6A3LA60_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LA60_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.030e-15
Identity = 31/58 (53.45%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    1 SGQVWMMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRE 174
            S QVW+ + KK+ +  G PKWE  + F+EYMED+NTCTLPH+KY D+EK+EM  + ++
Sbjct:  214 SFQVWLRDVKKMGEFNG-PKWEAMELFKEYMEDYNTCTLPHEKYYDVEKYEMKRYQKQ 270          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig12716.1668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIQ9_ECTSI6.880e-3787.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZAA4_9STRA2.220e-1857.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0W8DDC6_PHYNI6.480e-1653.45Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
W2R0L3_PHYPN1.330e-1553.45Uncharacterized protein n=8 Tax=Phytophthora paras... [more]
W4FFX2_9STRA2.890e-1550.77Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A418EPQ7_9STRA3.630e-1550.77Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A3F2RTC5_9STRA3.870e-1551.72Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A8K1FMQ5_PYTOL3.880e-1543.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A484EF14_BRELC6.260e-1553.45Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A6A3LA60_9STRA7.030e-1553.45Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig12716contigE-siliculosus-1a_F_contig12716:626..1304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size189
Model size204
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
Ec32 orthologEc-03_001150.1
Ec32 ortholog descriptionconserved unknown protein
EggNOG OGs28HHB@1,2QPV8@2759
Seed eggNOG ortholog2880.D8LIQ9
Seed ortholog evalue3.2e-26
Seed ortholog score123.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig12716.1668.1prot_E-siliculosus-1a_F_contig12716.1668.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig12716 641..1304 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927794.7609417-UTR-E-siliculosus-1a_F_contig12716:625..6401622927794.7609417-UTR-E-siliculosus-1a_F_contig12716:625..640Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12716 626..640 +
1696318682.2605393-UTR-E-siliculosus-1a_F_contig12716:625..6401696318682.2605393-UTR-E-siliculosus-1a_F_contig12716:625..640Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig12716 626..640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927794.7752948-CDS-E-siliculosus-1a_F_contig12716:640..6911622927794.7752948-CDS-E-siliculosus-1a_F_contig12716:640..691Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12716 641..691 +
1696318682.2733746-CDS-E-siliculosus-1a_F_contig12716:640..6911696318682.2733746-CDS-E-siliculosus-1a_F_contig12716:640..691Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12716 641..691 +
1622927794.788216-CDS-E-siliculosus-1a_F_contig12716:1166..13041622927794.788216-CDS-E-siliculosus-1a_F_contig12716:1166..1304Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12716 1167..1304 +
1696318682.2835546-CDS-E-siliculosus-1a_F_contig12716:1166..13041696318682.2835546-CDS-E-siliculosus-1a_F_contig12716:1166..1304Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig12716 1167..1304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig12716.1668.1

>prot_E-siliculosus-1a_F_contig12716.1668.1 ID=prot_E-siliculosus-1a_F_contig12716.1668.1|Name=mRNA_E-siliculosus-1a_F_contig12716.1668.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=63bp
MMEQKKIHDTGGMPKWETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEF
HRELSTRSTRSV*
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mRNA from alignment at E-siliculosus-1a_F_contig12716:626..1304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig12716.1668.1 ID=mRNA_E-siliculosus-1a_F_contig12716.1668.1|Name=mRNA_E-siliculosus-1a_F_contig12716.1668.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=679bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12716:626..1304+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCTGGACAGGTGTGGATGATGGAGCAGAAGAAGATCCACGACACGGGAGG CATGCCGAAATGGGAGGTGCGTGCTGCTGCTTCGGCGGTGGTCGTGTTGA CACGTTGTTTGCAAATGTCGTATTATAGTGGGACGTTCCGCACAATTTGT TCGTCTTTTTTTAGATGTATTTATTGATTTAGTTTGTTCGTGCATCCTCG TTGTGCCGGGCGTGTTGGTTGGTGTTGTGGCGGTCTGCCGCCCGTGACGA GGGGTGTCGATCCGTCTCCTCCTACCAGTCACGGTTGTACTCGCTGTTTC CGGCGCGTTGCGTGGAAGAGGGCAGAGAGCTCTTGTTTGTTCCTCGATTT ATTTTTTGTTTACATACCGCGGCCTACTCTGACGCCTGCTCATGAACCTC TCTCTACGGCCGTCATCATCACAAGCCACTTTTTTTTTTTGTTATACTCG GTTCGGCTACACCTCACAACTCCTGCTCTCCTTTGGTCTCCTCTTGTCTC TCTTTCCTCGTCTCGTCTCGTCTCGTCTCTCGTCGGTTCAGACGAAGCAG TATTTCCGTGAGTACATGGAGGACTTCAACACCTGCACCCTGCCGCACGA CAAGTACATCGATCTGGAGAAGTGGGAGATGGCGGAGTTCCACCGTGAGT TATCTACGAGATCTACGAGATCTGTGTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig12716:626..1304+

>mRNA_E-siliculosus-1a_F_contig12716.1668.1 ID=mRNA_E-siliculosus-1a_F_contig12716.1668.1|Name=mRNA_E-siliculosus-1a_F_contig12716.1668.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=378bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig12716:626..1304+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATGGAGCAGAAGAAGATCCACGACACGGGAGGCATGCCGAAATGGGA
GATGATGGAGCAGAAGAAGATCCACGACACGGGAGGCATGCCGAAATGGG
AGACGAAGCAGTATTTCCGTGAGTACATGGAGGACTTCAACACCTGCACC
CTGCCGCACGACAAGTACATCGATCTGGAGAAGTGGGAGATGGCGGAGTT
CCACCGTGAGTTATCTACGAGATCTACGAGATCTGTGTAGACGAAGCAGT
ATTTCCGTGAGTACATGGAGGACTTCAACACCTGCACCCTGCCGCACGAC
AAGTACATCGATCTGGAGAAGTGGGAGATGGCGGAGTTCCACCGTGAGTT
ATCTACGAGATCTACGAGATCTGTGTAG
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